Evaluation of 15 caespitose bamboo EST-SSR markers for cross-species/genera transferability and ability to identify interspecies hybrids

Plant Breeding

Volumn 130, Issue 5, 2011, Pages 596-600

  Dong, Wen Juan ^a   Wu, Miao Dan ^a   Lin, Yuan ^a   Zhou, Ming Bing ^a   Tang, Ding Qin ^a  

^a ZHEJIANG A F UNIVERSITY   (China)

Author keywords

Bambusa edulis; Bambusa oldhamii; Cross species transferability; EST SSR; Interspecies hybrid identification

Indexed keywords

BAMBUSA; DENDROCALAMOPSIS OLDHAMII; PHYLLOSTACHYS PUBESCENS;

EID: 80053904089     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2011.01860.x     Document Type: Article

References (33)

1. Bell, C. J., and J. R. Ecker, 1994: Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19, 137-144.
2. Buard, J., A. Bourdet, J. Yardley, Y. Dubrova, and A. J. Jeffreys, 1998: Influences of array size and homogeneity on minisatellite mutation. EMBO J. 15, 3495-3502.
3. Chen, R., X. Li, W. Song, G. Liang, P. Zhang, R. Lin, W. Zong, C. Chen, and H. Fung, 2003: Chromosome Atlas of Major Economic Plants Genome in China, Tomus IV: Chromosome Atlas of Various Bamboo Species, 275-284. Science Press, Beijing.
4. Doyle, J. J., and J. L. Doyle, 1987: A rapid isolation procedure for small quantities of fresh leaf materials. Phytochem. Bull. 19, 11-15.
5. Dransfield, S., and E. A. Widjaja, 1995: Plant Resources of South-East Asia No. 7 Bamboos. Backhuys Publishers, Leiden.
6. Feng, S., W. Li, H. Huang, J. Wang, and Y. Wu, 2009: Development, characterization and cross-species/genera transferability of EST-SSR markers for rubber tree (Hevea brasiliensis). Mol. Breed. 23, 85-97.
7. Hancock, J. M., 1999: Microsatellites and other simple sequences: genomic context and mutational mechanisms. In: A. B. Goldstein, and C. Schlotterer (eds), Microsatellites: Evolution and Applications, 1-9. Oxford University Press, Oxford.
8. Keng, P. C., and Z. P. Wang, 1996: Flora Reipublicae Popularis Sinicae, Vol. 9 (1), 52-129. Science Press, Beijing. (in Chinese).
9. Kitamura, K., T. Saitoh, A. Matsuo, and Y. Suyama, 2009: Development of microsatellite markers for the dwarf bamboo species Sasa cernua and Sasa kurilensis (Poaceae) in northern Japan. Mol. Ecol. Resour. 9, 1470-1472.
10. La Rota, M., R. V. Kantety, J. K. Yu, and M. E. Sorrells, 2005: Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat and barley. BMC Genomics 6, 23.
11. Lin, C.-S., Y.-H. Lai, N.-T. Liu, H.-S. Tsay, W.-C. Chang, and J. J. W. Chen, 2006: Identification of ESTs differentially expressed in green and albino mutant bamboo (Bambusa edulis) by suppressive subtractive hybridization (SSH) and microarray analysis. Plant Cell Tiss. Organ Cult. 86, 169-175.
12. Liu, N.-T., F.-H. Wu, H.-S. Tsay, W.-C. Chang, and C.-S. Lin, 2008: Establishment of a cDNA library from Bambusa edulis Murno in vitro-grown shoots. Plant Cell Tiss. Organ Cult. 95, 21-27.
13. Lu, J. J., K. Yoshinaga, W. Fang, and D. Q. Tang, 2009: Identification of the hybrid bamboo F1 by SSR markers. Sci. Silv. Sin. 45, 29-34 (in Chinese with English abstract).
14. Malysheva, L., T. Sjakste, F. Matzk, M. Roder, and M. Ganal, 2003: Molecular cytogenetic analysis of wheat-barley hybrids using genomic in situ hybridization and barley microsatellite markers. Genome 46, 314-322.
15. Miller, R. T., A. G. Christoffels, C. Gopalakrishnan, J. Burke, A. A. Ptitsyn, T. R. Broveak, and W. A. Hide, 1999: A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base. Genome Res. 9, 1143-1155.
16. Miyazaki, Y., N. Ohnishi, K. Hirayama, and J. Nagata, 2009: Development and characterization of polymorphic microsatellite DNA markers for Sasa senanensis (Poaceae: Bambuseae). Conserv. Genet. 10, 585-587.
17. Nayak, S., and G. R. Rout, 2005: Isolation and characterization of microsatellites in Bambusa arundinacea and cross species amplification in other bamboos. Plant Breed. 124, 559-602.
18. Ohrnberger, D., 1999: The Bamboos of the World, 250-280. Elsevier, Amsterdam.
19. Panaud, O., X. Chen, and S. R. McCouch, 1996: Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol. Gen. Genet. 252, 597-607.
20. Powell, W., G. C. Machray, and J. Provan, 1996: Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1, 215-222.
21. Rajora, P., and H. Rahman, 2003: Microsatellite DNA and RAPD fingerprinting, identification and genetic relationships of hybrid poplar (Populus×canadensis) cultivars. Theor. Appl. Genet. 106, 470-477.
22. Rossetto, M., 2001: Sourcing of SSR markers from related plant species. In: R. J. Henry (ed.), Plant Genotyping - the DNA Fingerprinting of Plant, 211-224. CABI Publishing, Oxfordshire, UK.
23. Sharma, R. K., P. Gupta, V. Sharma, A. Sood, T. Mohapatra, and P. S. Ahuja, 2008: Evaluation of rice and sugarcane SSR markers for phylogenetic and genetic diversity analyses in bamboo. Genome 51, 91-103.
24. Sharma, V., P. Bhardwaj, R. Kumar, R. K. Sharma, A. Sood, and P. S. Ahuja, 2009: Identification and cross-species amplification of EST derived SSR markers in different bamboo. Conserv. Genet. 10, 721-724.
25. Tang, D. Q., 2009: Genomic sequencing and its application for biological and evolutional research in bamboo. Bamboo J. 26, 1-10.
26. Tang, D. Q., J. J. Lu, W. Fang, S. Zhang, and M. B. Zhou, 2010: Development, characterization and utilization of GenBank microsatellite markers in Phyllostachys pubescens and related species. Mol. Breed. 25, 299-311.
27. Tautz, D., 1989: Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17, 6463-6471.
28. Temnykh, S., G. DeClerck, A. Lukashova, L. Lipovich, S. Cartinhour, and S. McCouch, 2001: Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11, 1441-1452.
29. Thiel, T., W. Michalek, R. K. Varshney, and A. Graner, 2003: Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor. Appl. Genet. 106, 411-422.
30. Wang, Y., G. Zhang, and X. Li, 2005: An evaluation on shoot quality of sympodial bamboo species and their hybrids. J. Bamboo Res. 24, 39-46 (in Chinese with English abstract).
31. Wu, M. D., W. J. Dong, and D. Q. Tang, 2009: Identification of four caespitose hybrid bamboos using SSR markers. Mol. Plant Breed. 7, 959-965.
32. Zhang, G., and F. Cheng, 1980: Elite hybrid bamboo species - Dendrocalamus latiflorus Χ Bambusa textilis. Sci. Silv. Sin. 16, 124-126 (in Chinese with English abstract).
33. Zhang, L. Y., M. Bernard, P. Leroy, C. Feuillet, and P. Sourdille, 2005: High transferability of bread wheat EST-derived SSRs to other cereals. Theor. Appl. Genet. 111, 677-687.