Protein interactions with surfaces: Computational approaches and repellency

Current Opinion in Chemical Biology

Volumn 15, Issue 5, 2011, Pages 683-689

  Szott, Luisa Mayorga ^a   Horbett, Thomas A ^a  

^a University of Washington   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MACROGOL; OLIGO(ETHYLENE GLYCOL); OLIGOMER; PHOSPHORYLCHOLINE; POLY(2 METHACRYLOYLOXYETHYLPHOSPHORYLCHOLINE); POLY(HYDROXYETHYLMETHACRYLATE); POLYMER; SILICON NITRIDE; TRYPTOPHAN; UNCLASSIFIED DRUG;

ADSORPTION; ATOM; CHEMICAL ENGINEERING; IN VIVO STUDY; MICROFLUIDICS; MOLECULAR DYNAMICS; MONTE CARLO METHOD; POLYMERIZATION; PROTEIN INTERACTION; REVIEW; SURFACE PROPERTY; X RAY CRYSTALLOGRAPHY;

ADSORPTION; BIOCOMPATIBLE MATERIALS; HUMANS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; METHACRYLATES; MOLECULAR DYNAMICS SIMULATION; MONTE CARLO METHOD; NANOTECHNOLOGY; POLYETHYLENE GLYCOLS; PROTEIN CONFORMATION; PROTEINS; SURFACE PROPERTIES; THERMODYNAMICS;

EID: 80053569301     PISSN: 13675931     EISSN: 18790402     Source Type: Journal    
DOI: 10.1016/j.cbpa.2011.04.016     Document Type: Review

References (32)

1. Vogler E.A., Siedlecki C.A. Contact activation of blood-plasma coagulation. Biomaterials 2009, 30:1857-1869.
2. Barnthip N., Parhi P., Golas A., Vogler E.A. Volumetric interpretation of protein adsorption: kinetics of protein-adsorption competition from binary solution. Biomaterials 2009, 30:6495-6513.
3. Berglin M., Pinori E., Sellborn A., Andersson M., Hulander M., Elwing H. Fibrinogen adsorption and conformational change on model polymers: novel aspects of mutual molecular rearrangement. Langmuir 2009, 25:5602-5608.
4. Roselin L.S., Lin M.S., Lin P.H., Chang Y., Chen W.Y. Recent trends and some applications of isothermal titration calorimetry in biotechnology. Biotechnol J 2010, 5:85-98.
5. Vasina E.N., Paszek E., Nicolau D.V., Nicolau D.V. The BAD project: data mining, database and prediction of protein adsorption on surfaces. Lab Chip 2009, 9:891-900.
6. Wei Y., Latour R.A. Benchmark experimental data set and assessment of adsorption free energy for peptide-surface interactions. Langmuir 2009, 25:5637-5646.
7. Vellore N.A., Yancey J.A., Collier G., Latour R.A., Stuart S.J. Assessment of the transferability of a protein force field for the simulation of peptide-surface interactions. Langmuir 2010, 26:7396-7404.
8. Sugita Y., Okamoto Y. Replica-exchange molecular dynamics method for protein folding. Chem Phys Lett 1999, 314:141-151.
9. Fears K.P., Sivaraman B., Powell G.L., Wu Y., Latour R.A. Probing the conformation and orientation of adsorbed enzymes using side-chain modification. Langmuir 2009, 25:9319-9327.
10. Ndao M., Ash J.T., Stayton P.S., Drobny G.P. The role of basic amino acids in the molecular recognition of hydroxyapatite by statherin using solid state NMR. Surf Sci 2010, 604:L39-L42.
11. Raffaini G., Ganazzoli F. Understanding the performance of biomaterials through molecular modeling: crossing the bridge between their intrinsic properties and the surface adsorption of proteins. Macromol Biosci 2007, 7:552-566.
12. Raffaini G., Ganazzoli F. Protein adsorption on a hydrophobic surface: a molecular dynamics study of lysozyme on graphite. Langmuir 2010, 26:5679-5689.
13. Piana S., Sarkar K., Lindorff-Larsen K., Guo M., Gruebele M., Shaw D.E. Computational design and experimental testing of the fastest-folding beta-sheet protein. J Mol Biol 2011, 405:43-48.
14. Sun Y., Latour R.A. Comparison of implicit solvent models for the simulation of protein-surface interactions. J Comput Chem 2006, 27:1908-1922.
15. Anand G., Sharma S., Dutta A.K., Kumar S.K., Belfort G. Conformational transitions of adsorbed proteins on surfaces of varying polarity. Langmuir 2010, 26:10803-10811.
16. Jordan S.W., Chaikof E.L. Novel thromboresistant materials. J Vasc Surg 2007, 45(Suppl. A):A104-A115.
17. Anderson J.M., Rodriguez A., Chang D.T. Foreign body reaction to biomaterials. Semin Immunol 2008, 20:86-100.
18. Wong I., Ho C.M. Surface molecular property modifications for poly(dimethylsiloxane) (PDMS) based microfluidic devices. Microfluid Nanofluidics 2009, 7:291-306.
19. Jin Z., Feng W., Zhu S., Sheardown H., Brash J.L. Protein-resistant polyurethane by sequential grafting of poly(2-hydroxyethyl methacrylate) and poly(oligo(ethylene glycol) methacrylate) via surface-initiated ATRP. J Biomed Mater Res A 2010, 95:1223-1232.
20. Rosso M., Nguyen A.T., de Jong E., Baggerman J., Paulusse J.M., Giesbers M., Fokkink R.G., Norde W., Schroen K., Rijn C.J., et al. Protein-repellent silicon nitride surfaces: UV-induced formation of oligoethylene oxide monolayers. ACS Appl Mater Interfaces 2011, 3:697-704.
21. Brzozowska A.M., de Keizer A., Detrembleur C., Cohen Stuart M.A., Norde W. Grafted ionomer complexes and their effect on protein adsorption on silica and polysulfone surfaces. Colloid Polym Sci 2010, 288:1621-1632.
22. Yang W., Xue H., Li W., Zhang J., Jiang S. Pursuing "zero" protein adsorption of poly(carboxybetaine) from undiluted blood serum and plasma. Langmuir 2009, 25:11911-11916.
23. Jiang S., Cao Z. Ultralow-fouling, functionalizable, and hydrolyzable zwitterionic materials and their derivatives for biological applications. Adv Mater 2010, 22:920-932.
24. Chen S., Cao Z., Jiang S. Ultra-low fouling peptide surfaces derived from natural amino acids. Biomaterials 2009, 30:5892-5896.
25. Jin Z., Feng W., Zhu S., Sheardown H., Brash J.L. Protein-resistant materials via surface-initiated atom transfer radical polymerization of 2-methacryloyloxyethyl phosphorylcholine. J Biomater Sci Polym Ed 2010, 21:1331-1344.
26. Shen M., Martinson L., Wagner M.S., Castner D.G., Ratner B.D., Horbett T.A. PEO-like plasma polymerized tetraglyme surface interactions with leukocytes and proteins: in vitro and in vivo studies. J Biomater Sci Polym Ed 2002, 13:367-390.
27. Zhang Z., Chao T., Liu L., Cheng G., Ratner B.D., Jiang S. Zwitterionic hydrogels: an in vivo implantation study. J Biomater Sci Polym Ed 2009, 20:1845-1859.
28. Yu Q., Zhang Y., Wang H., Brash J., Chen H. Anti-fouling bioactive surfaces. Acta Biomater 2011, 7:1550-1557.
29. Alibeik S., Zhu S., Brash J.L. Surface modification with PEG and hirudin for protein resistance and thrombin neutralization in blood contact. Colloids Surf B Biointerfaces 2010, 81:389-396.
30. Sask K.N., McClung W.G., Berry L.R., Chan A.K., Brash J.L. Immobilization of an antithrombin-heparin complex on gold: anticoagulant properties and platelet interactions. Acta Biomater 2011, 7:2029-2034.
31. Li D., Chen H., Wang S., Wu Z., Brash J.L. Lysine-poly(2-hydroxyethyl methacrylate) modified polyurethane surface with high lysine density and fibrinolytic activity. Acta Biomater 2011, 7:954-958.
32. Humphrey W., Dalke A., Schulten K. VMD: visual molecular dynamics. J Mol Graph 1996, 14. 33-38, 27-38.