-
2
-
-
70350061951
-
Neuroscience in the era of functional genomics and systems biology.
-
Geschwind DH, Konopka G. Neuroscience in the era of functional genomics and systems biology. Nature 2009, 461:908-915.
-
(2009)
Nature
, vol.461
, pp. 908-915
-
-
Geschwind, D.H.1
Konopka, G.2
-
3
-
-
77953429462
-
Brain function and chromatin plasticity.
-
Dulac C. Brain function and chromatin plasticity. Nature 2010, 465:728-735.
-
(2010)
Nature
, vol.465
, pp. 728-735
-
-
Dulac, C.1
-
4
-
-
77952678006
-
Epigenetic control of neural precursor cell fate during development.
-
Hirabayashi Y, Gotoh Y. Epigenetic control of neural precursor cell fate during development. Nat Rev Neurosci 2010, 11:377-388.
-
(2010)
Nat Rev Neurosci
, vol.11
, pp. 377-388
-
-
Hirabayashi, Y.1
Gotoh, Y.2
-
5
-
-
77951643590
-
Identifying single-cell molecular programs by stochastic profiling.
-
Janes KA, Wang CC, Holmberg KJ, Cabral K, Brugge JS. Identifying single-cell molecular programs by stochastic profiling. Nat Methods 2010, 7:311-317.
-
(2010)
Nat Methods
, vol.7
, pp. 311-317
-
-
Janes, K.A.1
Wang, C.C.2
Holmberg, K.J.3
Cabral, K.4
Brugge, J.S.5
-
6
-
-
33644595247
-
Technology Insight: querying the genome with microarrays-progress and hope for neurological disease.
-
Coppola G, Geschwind DH. Technology Insight: querying the genome with microarrays-progress and hope for neurological disease. Nat Clin Pract Neurol 2006, 2:147-158.
-
(2006)
Nat Clin Pract Neurol
, vol.2
, pp. 147-158
-
-
Coppola, G.1
Geschwind, D.H.2
-
7
-
-
44249085434
-
Serial analysis of gene expression (SAGE): experimental method and data analysis.
-
Unit 11
-
Blackshaw S, St Croix B, Polyak K, Kim JB, Cai L. 2007. Serial analysis of gene expression (SAGE): experimental method and data analysis. Curr Protoc Hum Genet 11, Unit 11 17.
-
(2007)
Curr Protoc Hum Genet
, vol.11
, pp. 17
-
-
Blackshaw, S.1
St Croix, B.2
Polyak, K.3
Kim, J.B.4
Cai, L.5
-
8
-
-
77950188668
-
SAGE analysis of genes differentially expressed in presymptomatic TgSOD1G93A transgenic mice identified cellular processes involved in early stage of ALS pathology.
-
Guipponi M, Li QX, Hyde L, Beissbarth T, Smyth GK, Masters CL, Scott HS. SAGE analysis of genes differentially expressed in presymptomatic TgSOD1G93A transgenic mice identified cellular processes involved in early stage of ALS pathology. J Mol Neurosci 2010, 41:172-182.
-
(2010)
J Mol Neurosci
, vol.41
, pp. 172-182
-
-
Guipponi, M.1
Li, Q.X.2
Hyde, L.3
Beissbarth, T.4
Smyth, G.K.5
Masters, C.L.6
Scott, H.S.7
-
9
-
-
41549109271
-
Identification of molecular markers of bipolar cells in the murine retina.
-
Kim DS, Ross SE, Trimarchi JM, Aach J, Greenberg ME, Cepko CL. Identification of molecular markers of bipolar cells in the murine retina. J Comp Neurol 2008, 507:1795-1810.
-
(2008)
J Comp Neurol
, vol.507
, pp. 1795-1810
-
-
Kim, D.S.1
Ross, S.E.2
Trimarchi, J.M.3
Aach, J.4
Greenberg, M.E.5
Cepko, C.L.6
-
10
-
-
20544435515
-
Early asymmetry of gene transcription in embryonic human left and right cerebral cortex.
-
Sun T, Patoine C, Abu-Khalil A, Visvader J, Sum E, Cherry TJ, Orkin SH, Geschwind DH, Walsh CA. Early asymmetry of gene transcription in embryonic human left and right cerebral cortex. Science 2005, 308:1794-1798.
-
(2005)
Science
, vol.308
, pp. 1794-1798
-
-
Sun, T.1
Patoine, C.2
Abu-Khalil, A.3
Visvader, J.4
Sum, E.5
Cherry, T.J.6
Orkin, S.H.7
Geschwind, D.H.8
Walsh, C.A.9
-
11
-
-
0035977135
-
Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes.
-
Blackshaw S, Fraioli RE, Furukawa T, Cepko CL. Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes. Cell 2001, 107:579-589.
-
(2001)
Cell
, vol.107
, pp. 579-589
-
-
Blackshaw, S.1
Fraioli, R.E.2
Furukawa, T.3
Cepko, C.L.4
-
12
-
-
35448984980
-
A SAGE study of apolipoprotein E3/3, E3/4 and E4/4 allele-specific gene expression in hippocampus in Alzheimer disease.
-
Xu PT, Li YJ, Qin XJ, Kroner C, Green-Odlum A, Xu H, Wang TY, Schmechel DE, Hulette CM, Ervin J, et al. A SAGE study of apolipoprotein E3/3, E3/4 and E4/4 allele-specific gene expression in hippocampus in Alzheimer disease. Mol Cell Neurosci 2007, 36: 313-331.
-
(2007)
Mol Cell Neurosci
, vol.36
, pp. 313-331
-
-
Xu, P.T.1
Li, Y.J.2
Qin, X.J.3
Kroner, C.4
Green-Odlum, A.5
Xu, H.6
Wang, T.Y.7
Schmechel, D.E.8
Hulette, C.M.9
Ervin, J.10
-
13
-
-
75349113672
-
Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling.
-
Ling KH, Hewitt CA, Beissbarth T, Hyde L, Banerjee K, Cheah PS, Cannon PZ, Hahn CN, Thomas PQ, Smyth GK, et al. Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling. Genome Biol 2009, 10:R104.
-
(2009)
Genome Biol
, vol.10
-
-
Ling, K.H.1
Hewitt, C.A.2
Beissbarth, T.3
Hyde, L.4
Banerjee, K.5
Cheah, P.S.6
Cannon, P.Z.7
Hahn, C.N.8
Thomas, P.Q.9
Smyth, G.K.10
-
14
-
-
53549106933
-
A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.
-
Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scote-Blachon C, Peyron C, Gandrillon O. A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome. BMC Genomics 2008, 9:418.
-
(2008)
BMC Genomics
, vol.9
, pp. 418
-
-
Hanriot, L.1
Keime, C.2
Gay, N.3
Faure, C.4
Dossat, C.5
Wincker, P.6
Scote-Blachon, C.7
Peyron, C.8
Gandrillon, O.9
-
15
-
-
72849144434
-
Sequencing technologies-the next generation.
-
Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010, 11:31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
16
-
-
77955090515
-
Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain.
-
Babbitt CC, Fedrigo O, Pfefferle AD, Boyle AP, Horvath JE, Furey TS, Wray GA. Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain. Genome Biol Evol 2010, 2:67-79.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 67-79
-
-
Babbitt, C.C.1
Fedrigo, O.2
Pfefferle, A.D.3
Boyle, A.P.4
Horvath, J.E.5
Furey, T.S.6
Wray, G.A.7
-
17
-
-
77957929225
-
Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq.
-
Xu AG, He L, Li Z, Xu Y, Li M, Fu X, Yan Z, Yuan Y, Menzel C, Li N, et al. Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq. PLoS Comput Biol 2010, 6:e1000843.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Xu, A.G.1
He, L.2
Li, Z.3
Xu, Y.4
Li, M.5
Fu, X.6
Yan, Z.7
Yuan, Y.8
Menzel, C.9
Li, N.10
-
18
-
-
77954794254
-
Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing.
-
Wetterbom A, Ameur A, Feuk L, Gyllensten U, Cavelier L. Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing. Genome Biol 2010, 11:R78.
-
(2010)
Genome Biol
, vol.11
-
-
Wetterbom, A.1
Ameur, A.2
Feuk, L.3
Gyllensten, U.4
Cavelier, L.5
-
19
-
-
69149097967
-
Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing.
-
Han X, Wu X, Chung WY, Li T, Nekrutenko A, Altman NS, Chen G, Ma H. Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing. Proc Natl Acad Sci U S A 2009, 106: 12741-12746.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 12741-12746
-
-
Han, X.1
Wu, X.2
Chung, W.Y.3
Li, T.4
Nekrutenko, A.5
Altman, N.S.6
Chen, G.7
Ma, H.8
-
20
-
-
77950396799
-
Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing.
-
Wu JQ, Habegger L, Noisa P, Szekely A, Qiu C, Hutchison S, Raha D, Egholm M, Lin H, Weissman S, et al. Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing. Proc Natl Acad Sci U S A 2010, 107:5254-5259.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 5254-5259
-
-
Wu, J.Q.1
Habegger, L.2
Noisa, P.3
Szekely, A.4
Qiu, C.5
Hutchison, S.6
Raha, D.7
Egholm, M.8
Lin, H.9
Weissman, S.10
-
21
-
-
57349168544
-
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain.
-
Wang X, Sun Q, McGrath SD, Mardis ER, Soloway PD, Clark AG. Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain. PLoS One 2008, 3:e3839.
-
(2008)
PLoS One
, vol.3
-
-
Wang, X.1
Sun, Q.2
McGrath, S.D.3
Mardis, E.R.4
Soloway, P.D.5
Clark, A.G.6
-
22
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes.
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456:470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
23
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
-
Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 2008, 40:1413-1415.
-
(2008)
Nat Genet
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
24
-
-
77955443472
-
Detection of splice junctions from paired-end RNA-seq data by SpliceMap.
-
Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res 2010, 38:4570-4578.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4570-4578
-
-
Au, K.F.1
Jiang, H.2
Lin, L.3
Xing, Y.4
Wong, W.H.5
-
25
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq.
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
26
-
-
70349690162
-
Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors.
-
Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP. Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors. PLoS One 2009, 4: e7192.
-
(2009)
PLoS One
, vol.4
-
-
Goff, L.A.1
Davila, J.2
Swerdel, M.R.3
Moore, J.C.4
Cohen, R.I.5
Wu, H.6
Sun, Y.E.7
Hart, R.P.8
-
27
-
-
70350653808
-
Transcriptome analysis by strand-specific sequencing of complementary DNA.
-
Parkhomchuk D, Borodina T, Amstislavskiy V, Banaru M, Hallen L, Krobitsch S, Lehrach H, Soldatov A. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res 2009, 37:e123.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Parkhomchuk, D.1
Borodina, T.2
Amstislavskiy, V.3
Banaru, M.4
Hallen, L.5
Krobitsch, S.6
Lehrach, H.7
Soldatov, A.8
-
28
-
-
56649102089
-
Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum.
-
Mudge J, Miller NA, Khrebtukova I, Lindquist IE, May GD, Huntley JJ, Luo S, Zhang L, van Velkinburgh JC, Farmer AD, et al. Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum. PLoS One 2008, 3:e3625.
-
(2008)
PLoS One
, vol.3
-
-
Mudge, J.1
Miller, N.A.2
Khrebtukova, I.3
Lindquist, I.E.4
May, G.D.5
Huntley, J.J.6
Luo, S.7
Zhang, L.8
van Velkinburgh, J.C.9
Farmer, A.D.10
-
29
-
-
74049148179
-
3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer.
-
Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, Oberg AL, Therneau TM, Smith DI, Poland GA, Wieben ED, et al. 3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer. BMC Genomics 2009, 10:531.
-
(2009)
BMC Genomics
, vol.10
, pp. 531
-
-
Asmann, Y.W.1
Klee, E.W.2
Thompson, E.A.3
Perez, E.A.4
Middha, S.5
Oberg, A.L.6
Therneau, T.M.7
Smith, D.I.8
Poland, G.A.9
Wieben, E.D.10
-
30
-
-
67249136028
-
A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level.
-
Zheng S, Chen L. A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level. Nucleic Acids Res 2009, 37:e75.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Zheng, S.1
Chen, L.2
-
31
-
-
77649135463
-
A statistical method for the detection of alternative splicing using RNA-seq.
-
Wang L, Xi Y, Yu J, Dong L, Yen L, Li W. A statistical method for the detection of alternative splicing using RNA-seq. PLoS One 2010, 5:e8529.
-
(2010)
PLoS One
, vol.5
-
-
Wang, L.1
Xi, Y.2
Yu, J.3
Dong, L.4
Yen, L.5
Li, W.6
-
32
-
-
77956316763
-
Massively parallel signature sequencing and bioinformatics analysis identifies up-regulation of TGFBI and SOX4 in human glioblastoma.
-
Lin B, Madan A, Yoon JG, Fang X, Yan X, Kim TK, Hwang D, Hood L, Foltz G. Massively parallel signature sequencing and bioinformatics analysis identifies up-regulation of TGFBI and SOX4 in human glioblastoma. PLoS One 2010, 5:e10210.
-
(2010)
PLoS One
, vol.5
-
-
Lin, B.1
Madan, A.2
Yoon, J.G.3
Fang, X.4
Yan, X.5
Kim, T.K.6
Hwang, D.7
Hood, L.8
Foltz, G.9
-
33
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers.
-
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 2010, 465: 182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
34
-
-
1242316281
-
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments.
-
Buck MJ, Lieb JD. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 2004, 83:349-360.
-
(2004)
Genomics
, vol.83
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
35
-
-
70349312354
-
ChIP-seq: advantages and challenges of a maturing technology.
-
Park PJ. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 2009, 10: 669-680.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
36
-
-
78649351382
-
β-Catenin promoter ChIP-Chip reveals potential schizophrenia and bipolar disorder gene network.
-
Pedrosa E, Shah A, Tenore C, Capogna M, Villa C, Guo X, Zheng D, Lachman HM. β-Catenin promoter ChIP-Chip reveals potential schizophrenia and bipolar disorder gene network. J Neurogenet 2010, 24:182-193.
-
(2010)
J Neurogenet
, vol.24
, pp. 182-193
-
-
Pedrosa, E.1
Shah, A.2
Tenore, C.3
Capogna, M.4
Villa, C.5
Guo, X.6
Zheng, D.7
Lachman, H.M.8
-
37
-
-
77956285826
-
Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways.
-
Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE. Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. PLoS One 2010, 5:e10870.
-
(2010)
PLoS One
, vol.5
-
-
Pfenning, A.R.1
Kim, T.K.2
Spotts, J.M.3
Hemberg, M.4
Su, D.5
West, A.E.6
-
38
-
-
64149122182
-
Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns.
-
Schnetz MP, Bartels CF, Shastri K, Balasubramanian D, Zentner GE, Balaji R, Zhang X, Song L, Wang Z, Laframboise T, et al. Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns. Genome Res 2009, 19:590-601.
-
(2009)
Genome Res
, vol.19
, pp. 590-601
-
-
Schnetz, M.P.1
Bartels, C.F.2
Shastri, K.3
Balasubramanian, D.4
Zentner, G.E.5
Balaji, R.6
Zhang, X.7
Song, L.8
Wang, Z.9
Laframboise, T.10
-
39
-
-
61449229391
-
Developmental and activity-dependent genomic occupancy profiles of CREB in monkey area V1.
-
Lalonde J, Lachance PE, Chaudhuri A. Developmental and activity-dependent genomic occupancy profiles of CREB in monkey area V1. Genes Brain Behav 2009, 8: 149-160.
-
(2009)
Genes Brain Behav
, vol.8
, pp. 149-160
-
-
Lalonde, J.1
Lachance, P.E.2
Chaudhuri, A.3
-
40
-
-
67449168166
-
Imipramine treatment and resiliency exhibit similar chromatin regulation in the mouse nucleus accumbens in depression models.
-
Wilkinson MB, Xiao G, Kumar A, LaPlant Q, Renthal W, Sikder D, Kodadek TJ, Nestler EJ. Imipramine treatment and resiliency exhibit similar chromatin regulation in the mouse nucleus accumbens in depression models. J Neurosci 2009, 29:7820-7832.
-
(2009)
J Neurosci
, vol.29
, pp. 7820-7832
-
-
Wilkinson, M.B.1
Xiao, G.2
Kumar, A.3
LaPlant, Q.4
Renthal, W.5
Sikder, D.6
Kodadek, T.J.7
Nestler, E.J.8
-
41
-
-
65549142573
-
Genome-wide analysis of chromatin regulation by cocaine reveals a role for sirtuins.
-
3rd
-
Renthal W, Kumar A, Xiao G, Wilkinson M, Covington HE, 3rd, Maze I, Sikder D, Robison AJ, LaPlant Q, Dietz DM, et al. Genome-wide analysis of chromatin regulation by cocaine reveals a role for sirtuins. Neuron 2009, 62:335-348.
-
(2009)
Neuron
, vol.62
, pp. 335-348
-
-
Renthal, W.1
Kumar, A.2
Xiao, G.3
Wilkinson, M.4
Covington, H.E.5
Maze, I.6
Sikder, D.7
Robison, A.J.8
LaPlant, Q.9
Dietz, D.M.10
-
42
-
-
36749050396
-
Identification of the transcriptional targets of FOXP2, a gene linked to speech and language, in developing human brain.
-
Spiteri E, Konopka G, Coppola G, Bomar J, Oldham M, Ou J, Vernes SC, Fisher SE, Ren B, Geschwind DH. Identification of the transcriptional targets of FOXP2, a gene linked to speech and language, in developing human brain. Am J Hum Genet 2007, 81: 1144-1157.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 1144-1157
-
-
Spiteri, E.1
Konopka, G.2
Coppola, G.3
Bomar, J.4
Oldham, M.5
Ou, J.6
Vernes, S.C.7
Fisher, S.E.8
Ren, B.9
Geschwind, D.H.10
-
43
-
-
36749013035
-
High-throughput analysis of promoter occupancy reveals direct neural targets of FOXP2, a gene mutated in speech and language disorders.
-
Vernes SC, Spiteri E, Nicod J, Groszer M, Taylor JM, Davies KE, Geschwind DH, Fisher SE. High-throughput analysis of promoter occupancy reveals direct neural targets of FOXP2, a gene mutated in speech and language disorders. Am J Hum Genet 2007, 81:1232-1250.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 1232-1250
-
-
Vernes, S.C.1
Spiteri, E.2
Nicod, J.3
Groszer, M.4
Taylor, J.M.5
Davies, K.E.6
Geschwind, D.H.7
Fisher, S.E.8
-
44
-
-
77953113675
-
Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis.
-
Lee EY, Ji H, Ouyang Z, Zhou B, Ma W, Vokes SA, McMahon AP, Wong WH, Scott MP. Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. Proc Natl Acad Sci U S A 2010, 107:9736-9741.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 9736-9741
-
-
Lee, E.Y.1
Ji, H.2
Ouyang, Z.3
Zhou, B.4
Ma, W.5
Vokes, S.A.6
McMahon, A.P.7
Wong, W.H.8
Scott, M.P.9
-
45
-
-
57649211993
-
Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection.
-
Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME. Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron 2008, 60:1022-1038.
-
(2008)
Neuron
, vol.60
, pp. 1022-1038
-
-
Flavell, S.W.1
Kim, T.K.2
Gray, J.M.3
Harmin, D.A.4
Hemberg, M.5
Hong, E.J.6
Markenscoff-Papadimitriou, E.7
Bear, D.M.8
Greenberg, M.E.9
-
46
-
-
77953069207
-
Setdb1 histone methyltransferase regulates mood-related behaviors and expression of the NMDA receptor subunit NR2B.
-
Jiang Y, Jakovcevski M, Bharadwaj R, Connor C, Schroeder FA, Lin CL, Straubhaar J, Martin G, Akbarian S. Setdb1 histone methyltransferase regulates mood-related behaviors and expression of the NMDA receptor subunit NR2B. J Neurosci 2010, 30: 7152-7167.
-
(2010)
J Neurosci
, vol.30
, pp. 7152-7167
-
-
Jiang, Y.1
Jakovcevski, M.2
Bharadwaj, R.3
Connor, C.4
Schroeder, F.A.5
Lin, C.L.6
Straubhaar, J.7
Martin, G.8
Akbarian, S.9
-
47
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers.
-
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009, 457:854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
48
-
-
77954041258
-
REST and CoREST modulate neuronal subtype specification, maturation and maintenance.
-
Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, Mehler MF. REST and CoREST modulate neuronal subtype specification, maturation and maintenance. PLoS One 2009, 4:e7936.
-
(2009)
PLoS One
, vol.4
-
-
Abrajano, J.J.1
Qureshi, I.A.2
Gokhan, S.3
Zheng, D.4
Bergman, A.5
Mehler, M.F.6
-
49
-
-
70449578270
-
Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation.
-
Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, Mehler MF. Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation. PLoS One 2009, 4:e7665.
-
(2009)
PLoS One
, vol.4
-
-
Abrajano, J.J.1
Qureshi, I.A.2
Gokhan, S.3
Zheng, D.4
Bergman, A.5
Mehler, M.F.6
-
50
-
-
78049293258
-
Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions.
-
Abrajano JJ, Qureshi IA, Gokhan S, Molero AE, Zheng D, Bergman A, Mehler MF. Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions. Proc Natl Acad Sci U S A 2010, 107:16685-16690.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 16685-16690
-
-
Abrajano, J.J.1
Qureshi, I.A.2
Gokhan, S.3
Molero, A.E.4
Zheng, D.5
Bergman, A.6
Mehler, M.F.7
-
51
-
-
55449093226
-
Regulatory network analyses reveal genome-wide potentiation of LIF signaling by glucocorticoids and define an innate cell defense response.
-
Langlais D, Couture C, Balsalobre A, Drouin J. Regulatory network analyses reveal genome-wide potentiation of LIF signaling by glucocorticoids and define an innate cell defense response. PLoS Genet 2008, 4: e1000224.
-
(2008)
PLoS Genet
, vol.4
-
-
Langlais, D.1
Couture, C.2
Balsalobre, A.3
Drouin, J.4
-
52
-
-
77952715009
-
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex.
-
Cheung I, Shulha HP, Jiang Y, Matevossian A, Wang J, Weng Z, Akbarian S. Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex. Proc Natl Acad Sci U S A 2010, 107:8824-8829.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 8824-8829
-
-
Cheung, I.1
Shulha, H.P.2
Jiang, Y.3
Matevossian, A.4
Wang, J.5
Weng, Z.6
Akbarian, S.7
-
53
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
54
-
-
68649109624
-
Survey of schizophrenia and bipolar disorder candidate genes using chromatin immunoprecipitation and tiled microarrays (ChIP-chip).
-
Pedrosa E, Locker J, Lachman HM. Survey of schizophrenia and bipolar disorder candidate genes using chromatin immunoprecipitation and tiled microarrays (ChIP-chip). J Neurogenet 2009, 23: 341-352.
-
(2009)
J Neurogenet
, vol.23
, pp. 341-352
-
-
Pedrosa, E.1
Locker, J.2
Lachman, H.M.3
-
55
-
-
57149100949
-
A predictive model of the oxygen and heme regulatory network in yeast.
-
Kundaje A, Xin X, Lan C, Lianoglou S, Zhou M, Zhang L, Leslie C. A predictive model of the oxygen and heme regulatory network in yeast. PLoS Comput Biol 2008, 4:e1000224.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Kundaje, A.1
Xin, X.2
Lan, C.3
Lianoglou, S.4
Zhou, M.5
Zhang, L.6
Leslie, C.7
-
56
-
-
77954517578
-
FastMEDUSA: a parallelized tool to infer gene regulatory networks.
-
Bozdag S, Li A, Wuchty S, Fine HA. FastMEDUSA: a parallelized tool to infer gene regulatory networks. Bioinformatics 2010, 26:1792-1793.
-
(2010)
Bioinformatics
, vol.26
, pp. 1792-1793
-
-
Bozdag, S.1
Li, A.2
Wuchty, S.3
Fine, H.A.4
-
57
-
-
77952871864
-
A genomic atlas of mouse hypothalamic development.
-
Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Wang H, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, et al. A genomic atlas of mouse hypothalamic development. Nat Neurosci 2010, 13: 767-775.
-
(2010)
Nat Neurosci
, vol.13
, pp. 767-775
-
-
Shimogori, T.1
Lee, D.A.2
Miranda-Angulo, A.3
Yang, Y.4
Wang, H.5
Jiang, L.6
Yoshida, A.C.7
Kataoka, A.8
Mashiko, H.9
Avetisyan, M.10
-
58
-
-
65649112466
-
Functional and evolutionary insights into human brain development through global transcriptome analysis.
-
Johnson MB, Kawasawa YI, Mason CE, Krsnik Z, Coppola G, Bogdanovic D, Geschwind DH, Mane SM, State MW, Sestan N. Functional and evolutionary insights into human brain development through global transcriptome analysis. Neuron 2009, 62:494-509.
-
(2009)
Neuron
, vol.62
, pp. 494-509
-
-
Johnson, M.B.1
Kawasawa, Y.I.2
Mason, C.E.3
Krsnik, Z.4
Coppola, G.5
Bogdanovic, D.6
Geschwind, D.H.7
Mane, S.M.8
State, M.W.9
Sestan, N.10
-
59
-
-
19944401504
-
Mouse brain organization revealed through direct genome-scale TF expression analysis.
-
Gray PA, Fu H, Luo P, Zhao Q, Yu J, Ferrari A, Tenzen T, Yuk DI, Tsung EF, Cai Z, et al. Mouse brain organization revealed through direct genome-scale TF expression analysis. Science 2004, 306:2255-2257.
-
(2004)
Science
, vol.306
, pp. 2255-2257
-
-
Gray, P.A.1
Fu, H.2
Luo, P.3
Zhao, Q.4
Yu, J.5
Ferrari, A.6
Tenzen, T.7
Yuk, D.I.8
Tsung, E.F.9
Cai, Z.10
-
60
-
-
75549087628
-
EMAGE mouse embryo spatial gene expression database: 2010 update.
-
Richardson L, Venkataraman S, Stevenson P, Yang Y, Burton N, Rao J, Fisher M, Baldock RA, Davidson DR, Christiansen JH. EMAGE mouse embryo spatial gene expression database: 2010 update. Nucleic Acids Res 2010, 38:D703-D709.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Richardson, L.1
Venkataraman, S.2
Stevenson, P.3
Yang, Y.4
Burton, N.5
Rao, J.6
Fisher, M.7
Baldock, R.A.8
Davidson, D.R.9
Christiansen, J.H.10
-
61
-
-
0346494761
-
GenePaint.org: an atlas of gene expression patterns in the mouse embryo.
-
Visel A, Thaller C, Eichele G. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res 2004, 32:D552-D556.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Visel, A.1
Thaller, C.2
Eichele, G.3
-
62
-
-
33846252240
-
Genome-wide atlas of gene expression in the adult mouse brain.
-
Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature 2007, 445:168-176.
-
(2007)
Nature
, vol.445
, pp. 168-176
-
-
Lein, E.S.1
Hawrylycz, M.J.2
Ao, N.3
Ayres, M.4
Bensinger, A.5
Bernard, A.6
Boe, A.F.7
Boguski, M.S.8
Brockway, K.S.9
Byrnes, E.J.10
-
63
-
-
74149093052
-
Areal and laminar differentiation in the mouse neocortex using large scale gene expression data.
-
Hawrylycz M, Bernard A, Lau C, Sunkin SM, Chakravarty MM, Lein ES, Jones AR, Ng L. Areal and laminar differentiation in the mouse neocortex using large scale gene expression data. Methods 2010, 50: 113-121.
-
(2010)
Methods
, vol.50
, pp. 113-121
-
-
Hawrylycz, M.1
Bernard, A.2
Lau, C.3
Sunkin, S.M.4
Chakravarty, M.M.5
Lein, E.S.6
Jones, A.R.7
Ng, L.8
-
64
-
-
74149088810
-
Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex.
-
Ng L, Lau C, Sunkin SM, Bernard A, Chakravarty MM, Lein ES, Jones AR, Hawrylycz M. Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex. Methods 2010, 50: 55-62.
-
(2010)
Methods
, vol.50
, pp. 55-62
-
-
Ng, L.1
Lau, C.2
Sunkin, S.M.3
Bernard, A.4
Chakravarty, M.M.5
Lein, E.S.6
Jones, A.R.7
Hawrylycz, M.8
-
65
-
-
74149083446
-
Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy.
-
Bohland JW, Bokil H, Pathak SD, Lee CK, Ng L, Lau C, Kuan C, Hawrylycz M, Mitra PP. Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods 2010, 50:105-112.
-
(2010)
Methods
, vol.50
, pp. 105-112
-
-
Bohland, J.W.1
Bokil, H.2
Pathak, S.D.3
Lee, C.K.4
Ng, L.5
Lau, C.6
Kuan, C.7
Hawrylycz, M.8
Mitra, P.P.9
-
66
-
-
60749125717
-
An anatomic gene expression atlas of the adult mouse brain.
-
Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, et al. An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci 2009, 12:356-362.
-
(2009)
Nat Neurosci
, vol.12
, pp. 356-362
-
-
Ng, L.1
Bernard, A.2
Lau, C.3
Overly, C.C.4
Dong, H.W.5
Kuan, C.6
Pathak, S.7
Sunkin, S.M.8
Dang, C.9
Bohland, J.W.10
-
67
-
-
74149090748
-
Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain.
-
Carson J, Ju T, Bello M, Thaller C, Warren J, Kakadiaris IA, Chiu W, Eichele G. Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain. Methods 2010, 50:85-95.
-
(2010)
Methods
, vol.50
, pp. 85-95
-
-
Carson, J.1
Ju, T.2
Bello, M.3
Thaller, C.4
Warren, J.5
Kakadiaris, I.A.6
Chiu, W.7
Eichele, G.8
-
68
-
-
11144313139
-
Automated characterization of gene expression patterns with an atlas of the mouse brain.
-
Carson JP, Ju T, Thaller C, Warren J, Bello M, Kakadiaris I, Chiu W, Eichele G. Automated characterization of gene expression patterns with an atlas of the mouse brain. Conf Proc IEEE Eng Med Biol Soc 2004, 4:2917-2920.
-
(2004)
Conf Proc IEEE Eng Med Biol Soc
, vol.4
, pp. 2917-2920
-
-
Carson, J.P.1
Ju, T.2
Thaller, C.3
Warren, J.4
Bello, M.5
Kakadiaris, I.6
Chiu, W.7
Eichele, G.8
-
69
-
-
85122620163
-
A geometric database for gene expression data.
-
Ju T, Warren J, Eichele G, Thaller C, Chiu W, Carson J. A geometric database for gene expression data. Symp Geom Process 2003:166-176.
-
(2003)
Symp Geom Process
, pp. 166-176
-
-
Ju, T.1
Warren, J.2
Eichele, G.3
Thaller, C.4
Chiu, W.5
Carson, J.6
-
70
-
-
14744299104
-
A method for automated detection of gene expression required for the establishment of a digital transcriptome-wide gene expression atlas.
-
Carson JP, Eichele G, Chiu W. A method for automated detection of gene expression required for the establishment of a digital transcriptome-wide gene expression atlas. J Microsc 2005, 217:275-281.
-
(2005)
J Microsc
, vol.217
, pp. 275-281
-
-
Carson, J.P.1
Eichele, G.2
Chiu, W.3
-
71
-
-
0242401835
-
A gene expression atlas of the central nervous system based on bacterial artificial chromosomes.
-
Gong S, Zheng C, Doughty ML, Losos K, Didkovsky N, Schambra UB, Nowak NJ, Joyner A, Leblanc G, Hatten ME, et al. A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature 2003, 425:917-925.
-
(2003)
Nature
, vol.425
, pp. 917-925
-
-
Gong, S.1
Zheng, C.2
Doughty, M.L.3
Losos, K.4
Didkovsky, N.5
Schambra, U.B.6
Nowak, N.J.7
Joyner, A.8
Leblanc, G.9
Hatten, M.E.10
-
72
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
-
Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4:44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
73
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005, 102:15545-15550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
74
-
-
23144464901
-
WebGestalt: an integrated system for exploring gene sets in various biological contexts.
-
Zhang B, Kirov S, Snoddy J. WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res 2005, 33:W741-W748.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Zhang, B.1
Kirov, S.2
Snoddy, J.3
-
75
-
-
33751384465
-
GATHER: a systems approach to interpreting genomic signatures.
-
Chang JT, Nevins JR. GATHER: a systems approach to interpreting genomic signatures. Bioinformatics 2006, 22:2926-2933.
-
(2006)
Bioinformatics
, vol.22
, pp. 2926-2933
-
-
Chang, J.T.1
Nevins, J.R.2
-
76
-
-
0347125328
-
JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
-
Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res 2004, 32:D91-D94.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
Wasserman, W.W.4
Lenhard, B.5
-
78
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.
-
Goecks J, Nekrutenko A, Taylor J. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 2010, 11:R86.
-
(2010)
Genome Biol
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
79
-
-
0141742293
-
PANTHER: a library of protein families and subfamilies indexed by function.
-
Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, Daverman R, Diemer K, Muruganujan A, Narechania A. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 13:2129-2141.
-
Genome Res
, vol.13
, pp. 2129-2141
-
-
Thomas, P.D.1
Campbell, M.J.2
Kejariwal, A.3
Mi, H.4
Karlak, B.5
Daverman, R.6
Diemer, K.7
Muruganujan, A.8
Narechania, A.9
-
80
-
-
58149193222
-
Human protein reference database-2009 update.
-
Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, et al. Human protein reference database-2009 update. Nucleic Acids Res 2009, 37:D767-D772.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
-
81
-
-
58149193234
-
STRING 8-a global view on proteins and their functional interactions in 630 organisms.
-
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, et al. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 2009, 37:D412-D416.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
Doerks, T.7
Julien, P.8
Roth, A.9
Simonovic, M.10
-
82
-
-
38949175007
-
A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging.
-
Miller JA, Oldham MC, Geschwind DH. A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging. J Neurosci 2008, 28: 1410-1420.
-
(2008)
J Neurosci
, vol.28
, pp. 1410-1420
-
-
Miller, J.A.1
Oldham, M.C.2
Geschwind, D.H.3
-
83
-
-
54949113578
-
Functional organization of the transcriptome in human brain.
-
Oldham MC, Konopka G, Iwamoto K, Langfelder P, Kato T, Horvath S, Geschwind DH. Functional organization of the transcriptome in human brain. Nat Neurosci 2008, 11:1271-1282.
-
(2008)
Nat Neurosci
, vol.11
, pp. 1271-1282
-
-
Oldham, M.C.1
Konopka, G.2
Iwamoto, K.3
Langfelder, P.4
Kato, T.5
Horvath, S.6
Geschwind, D.H.7
-
84
-
-
68749092138
-
The organization of the transcriptional network in specific neuronal classes.
-
Winden KD, Oldham MC, Mirnics K, Ebert PJ, Swan CH, Levitt P, Rubenstein JL, Horvath S, Geschwind DH. The organization of the transcriptional network in specific neuronal classes. Mol Syst Biol 2009, 5:291.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 291
-
-
Winden, K.D.1
Oldham, M.C.2
Mirnics, K.3
Ebert, P.J.4
Swan, C.H.5
Levitt, P.6
Rubenstein, J.L.7
Horvath, S.8
Geschwind, D.H.9
-
85
-
-
0742305866
-
Network biology: understanding the cell's functional organization.
-
Barabási AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5:101-113.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
86
-
-
0034609791
-
The large-scale organization of metabolic networks.
-
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. The large-scale organization of metabolic networks. Nature 2000, 407:651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
87
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks.
-
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabasi AL. Hierarchical organization of modularity in metabolic networks. Science 2002, 297:1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
88
-
-
23944458138
-
A general framework for weighted gene co-expression network analysis.
-
Article 17
-
Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 2005, 4:Article 17.
-
(2005)
Stat Appl Genet Mol Biol
, vol.4
-
-
Zhang, B.1
Horvath, S.2
-
89
-
-
70449653431
-
Human-specific transcriptional regulation of CNS development genes by FOXP2.
-
Konopka G, Bomar JM, Winden K, Coppola G, Jonsson ZO, Gao F, Peng S, Preuss TM, Wohlschlegel JA, Geschwind DH. Human-specific transcriptional regulation of CNS development genes by FOXP2. Nature 2009, 462:213-217.
-
(2009)
Nature
, vol.462
, pp. 213-217
-
-
Konopka, G.1
Bomar, J.M.2
Winden, K.3
Coppola, G.4
Jonsson, Z.O.5
Gao, F.6
Peng, S.7
Preuss, T.M.8
Wohlschlegel, J.A.9
Geschwind, D.H.10
-
90
-
-
77955454185
-
Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways.
-
Miller JA, Horvath S, Geschwind DH. Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways. Proc Natl Acad Sci U S A 2010, 107:12698-12703.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 12698-12703
-
-
Miller, J.A.1
Horvath, S.2
Geschwind, D.H.3
-
91
-
-
33845231723
-
Conservation and evolution of gene coexpression networks in human and chimpanzee brains.
-
Oldham MC, Horvath S, Geschwind DH. Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc Natl Acad Sci U S A 2006, 103:17973-17978.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17973-17978
-
-
Oldham, M.C.1
Horvath, S.2
Geschwind, D.H.3
-
92
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis.
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinform 2008, 9:559.
-
(2008)
BMC Bioinform
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
93
-
-
77049120351
-
Network module detection: Affinity search technique with the multi-node topological overlap measure.
-
Li A, Horvath S. Network module detection: Affinity search technique with the multi-node topological overlap measure. BMC Res Notes 2009, 2:142.
-
(2009)
BMC Res Notes
, vol.2
, pp. 142
-
-
Li, A.1
Horvath, S.2
-
94
-
-
33846705486
-
Network neighborhood analysis with the multi-node topological overlap measure.
-
Li A, Horvath S. Network neighborhood analysis with the multi-node topological overlap measure. Bioinformatics 2007, 23:222-231.
-
(2007)
Bioinformatics
, vol.23
, pp. 222-231
-
-
Li, A.1
Horvath, S.2
-
95
-
-
40049099114
-
Defining clusters from a hierarchical cluster tree: the dynamic tree cut package for R.
-
Langfelder P, Zhang B, Horvath S. Defining clusters from a hierarchical cluster tree: the dynamic tree cut package for R. Bioinformatics 2008, 24:719-720.
-
(2008)
Bioinformatics
, vol.24
, pp. 719-720
-
-
Langfelder, P.1
Zhang, B.2
Horvath, S.3
-
96
-
-
33748201591
-
Independent component analysis reveals new and biologically significant structures in micro array data.
-
Frigyesi A, Veerla S, Lindgren D, Hoglund M. Independent component analysis reveals new and biologically significant structures in micro array data. BMC Bioinform 2006, 7:290.
-
(2006)
BMC Bioinform
, vol.7
, pp. 290
-
-
Frigyesi, A.1
Veerla, S.2
Lindgren, D.3
Hoglund, M.4
-
97
-
-
61349147203
-
Independent component analysis of Alzheimer's DNA microarray gene expression data.
-
Kong W, Mou X, Liu Q, Chen Z, Vanderburg CR, Rogers JT, Huang X. Independent component analysis of Alzheimer's DNA microarray gene expression data. Mol Neurodegener 2009, 4:5.
-
(2009)
Mol Neurodegener
, vol.4
, pp. 5
-
-
Kong, W.1
Mou, X.2
Liu, Q.3
Chen, Z.4
Vanderburg, C.R.5
Rogers, J.T.6
Huang, X.7
-
98
-
-
54349122465
-
Gene expression data classification using consensus independent component analysis.
-
Zheng CH, Huang DS, Kong XZ, Zhao XM. Gene expression data classification using consensus independent component analysis. Genomics Proteomics Bioinform 2008, 6:74-82.
-
(2008)
Genomics Proteomics Bioinform
, vol.6
, pp. 74-82
-
-
Zheng, C.H.1
Huang, D.S.2
Kong, X.Z.3
Zhao, X.M.4
-
99
-
-
34548444625
-
Elucidating the altered transcriptional programs in breast cancer using independent component analysis.
-
Teschendorff AE, Journee M, Absil PA, Sepulchre R, Caldas C. Elucidating the altered transcriptional programs in breast cancer using independent component analysis. PLoS Comput Biol 2007, 3:e161.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Teschendorff, A.E.1
Journee, M.2
Absil, P.A.3
Sepulchre, R.4
Caldas, C.5
-
100
-
-
59949086432
-
minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information.
-
Meyer PE, Lafitte F, Bontempi G. minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information. BMC Bioinform 2008, 9:461.
-
(2008)
BMC Bioinform
, vol.9
, pp. 461
-
-
Meyer, P.E.1
Lafitte, F.2
Bontempi, G.3
-
101
-
-
33846527894
-
Using mutual information to discover temporal patterns in gene expression data.
-
Chumakov S, Ballesteros E, Rodriguez Sanchez JE, Chavez A, Zhang M, Pettit BM, Fofanov Y. Using mutual information to discover temporal patterns in gene expression data. Med Phys Mex Symp Med Phys 2006, 854:25-30.
-
(2006)
Med Phys Mex Symp Med Phys
, vol.854
, pp. 25-30
-
-
Chumakov, S.1
Ballesteros, E.2
Rodriguez Sanchez, J.E.3
Chavez, A.4
Zhang, M.5
Pettit, B.M.6
Fofanov, Y.7
-
102
-
-
77950669072
-
Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia.
-
Torkamani A, Dean B, Schork NJ, Thomas EA. Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia. Genome Res 2010, 20:403-412.
-
(2010)
Genome Res
, vol.20
, pp. 403-412
-
-
Torkamani, A.1
Dean, B.2
Schork, N.J.3
Thomas, E.A.4
-
103
-
-
55949083343
-
Neuroendocrine and immune network re-modeling in chronic fatigue syndrome: an exploratory analysis.
-
Fuite J, Vernon SD, Broderick G. Neuroendocrine and immune network re-modeling in chronic fatigue syndrome: an exploratory analysis. Genomics 2008, 92: 393-399.
-
(2008)
Genomics
, vol.92
, pp. 393-399
-
-
Fuite, J.1
Vernon, S.D.2
Broderick, G.3
-
104
-
-
77951634577
-
Cell type-specific gene expression differences in complex tissues.
-
Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM, Butte AJ. Cell type-specific gene expression differences in complex tissues. Nat Methods 2010, 7: 287-289.
-
(2010)
Nat Methods
, vol.7
, pp. 287-289
-
-
Shen-Orr, S.S.1
Tibshirani, R.2
Khatri, P.3
Bodian, D.L.4
Staedtler, F.5
Perry, N.M.6
Hastie, T.7
Sarwal, M.M.8
Davis, M.M.9
Butte, A.J.10
-
105
-
-
77956115125
-
Effects of time point measurement on the reconstruction of gene regulatory networks.
-
Yan W, Zhu H, Yang Y, Chen J, Zhang Y, Shen B. Effects of time point measurement on the reconstruction of gene regulatory networks. Molecules 2010, 15: 5354-5368.
-
(2010)
Molecules
, vol.15
, pp. 5354-5368
-
-
Yan, W.1
Zhu, H.2
Yang, Y.3
Chen, J.4
Zhang, Y.5
Shen, B.6
-
106
-
-
84866934189
-
Inferring dynamic genetic networks with low order independencies.
-
Article 9
-
Lebre S. Inferring dynamic genetic networks with low order independencies. Stat Appl Genet Mol Biol 2009, 8:Article 9.
-
(2009)
Stat Appl Genet Mol Biol
, vol.8
-
-
Lebre, S.1
-
107
-
-
77954956827
-
Detecting network modules in fMRI time series: a weighted network analysis approach.
-
Mumford JA, Horvath S, Oldham MC, Langfelder P, Geschwind DH, Poldrack RA. Detecting network modules in fMRI time series: a weighted network analysis approach. Neuroimage 2010, 52:1465-1476.
-
(2010)
Neuroimage
, vol.52
, pp. 1465-1476
-
-
Mumford, J.A.1
Horvath, S.2
Oldham, M.C.3
Langfelder, P.4
Geschwind, D.H.5
Poldrack, R.A.6
-
108
-
-
0002221492
-
The structure of the nervous system of the nematode Caenorhabditis elegans.
-
White JG, Southgate E, Thomson JN, Brenner S. The structure of the nervous system of the nematode Caenorhabditis elegans. Philos Trans R Soc Lond B Biol Sci 1986, 314:1-340.
-
(1986)
Philos Trans R Soc Lond B Biol Sci
, vol.314
, pp. 1-340
-
-
White, J.G.1
Southgate, E.2
Thomson, J.N.3
Brenner, S.4
-
109
-
-
0037372027
-
Tailoring the genome: the power of genetic approaches.
-
Nagy A, Perrimon N, Sandmeyer S, Plasterk R. Tailoring the genome: the power of genetic approaches. Nat Genet 2003, 33(Suppl):276-284.
-
(2003)
Nat Genet
, vol.33
, Issue.SUPPL
, pp. 276-284
-
-
Nagy, A.1
Perrimon, N.2
Sandmeyer, S.3
Plasterk, R.4
-
110
-
-
77955514183
-
Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans.
-
3rd
-
Smith CJ, Watson JD, Spencer WC, O'Brien T, Cha B, Albeg A, Treinin M, Miller DM, 3rd. Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans. Dev Biol 2010, 345:18-33.
-
(2010)
Dev Biol
, vol.345
, pp. 18-33
-
-
Smith, C.J.1
Watson, J.D.2
Spencer, W.C.3
O'Brien, T.4
Cha, B.5
Albeg, A.6
Treinin, M.7
Miller, D.M.8
-
111
-
-
33747704196
-
Microarrays and the microscope: balancing throughput with resolution.
-
Coppola G, Geschwind DH. Microarrays and the microscope: balancing throughput with resolution. J Physiol 2006, 575:353-359.
-
(2006)
J Physiol
, vol.575
, pp. 353-359
-
-
Coppola, G.1
Geschwind, D.H.2
-
112
-
-
36849091463
-
Gene targeting in embryonic stem cells scores a knockout in Stockholm.
-
Mak TW. Gene targeting in embryonic stem cells scores a knockout in Stockholm. Cell 2007, 131: 1027-1031.
-
(2007)
Cell
, vol.131
, pp. 1027-1031
-
-
Mak, T.W.1
-
113
-
-
73449138248
-
Spatial analysis of expression patterns predicts genetic interactions at the mid-hindbrain boundary.
-
Wittmann DM, Blochl F, Trumbach D, Wurst W, Prakash N, Theis FJ. Spatial analysis of expression patterns predicts genetic interactions at the mid-hindbrain boundary. PLoS Comput Biol 2009, 5:e1000569.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Wittmann, D.M.1
Blochl, F.2
Trumbach, D.3
Wurst, W.4
Prakash, N.5
Theis, F.J.6
-
114
-
-
76949097128
-
Gene expression profiling in C57BL/6J and A/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background.
-
de Jong S, Fuller TF, Janson E, Strengman E, Horvath S, Kas MJ, Ophoff RA. Gene expression profiling in C57BL/6J and A/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background. BMC Genomics 2010, 11:20.
-
(2010)
BMC Genomics
, vol.11
, pp. 20
-
-
de Jong, S.1
Fuller, T.F.2
Janson, E.3
Strengman, E.4
Horvath, S.5
Kas, M.J.6
Ophoff, R.A.7
-
115
-
-
77949360900
-
Differential gene expression in migrating cortical interneurons during mouse forebrain development.
-
Faux C, Rakic S, Andrews W, Yanagawa Y, Obata K, Parnavelas JG. Differential gene expression in migrating cortical interneurons during mouse forebrain development. J Comp Neurol 2010, 518:1232-1248.
-
(2010)
J Comp Neurol
, vol.518
, pp. 1232-1248
-
-
Faux, C.1
Rakic, S.2
Andrews, W.3
Yanagawa, Y.4
Obata, K.5
Parnavelas, J.G.6
-
116
-
-
77955719183
-
Computational analysis of gene regulation in animal sleep deprivation.
-
Wang H, Liu Y, Briesemann M, Yan J. Computational analysis of gene regulation in animal sleep deprivation. Physiol Genomics 2010, 42:427-436.
-
(2010)
Physiol Genomics
, vol.42
, pp. 427-436
-
-
Wang, H.1
Liu, Y.2
Briesemann, M.3
Yan, J.4
-
117
-
-
77953076614
-
Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate.
-
Wang X, Bao X, Pal R, Agbas A, Michaelis EK. Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate. BMC Genomics 2010, 11:360.
-
(2010)
BMC Genomics
, vol.11
, pp. 360
-
-
Wang, X.1
Bao, X.2
Pal, R.3
Agbas, A.4
Michaelis, E.K.5
-
118
-
-
77954838957
-
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls.
-
Zhang C, Frias MA, Mele A, Ruggiu M, Eom T, Marney CB, Wang H, Licatalosi DD, Fak JJ, Darnell RB. Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Science 2010, 329:439-443.
-
(2010)
Science
, vol.329
, pp. 439-443
-
-
Zhang, C.1
Frias, M.A.2
Mele, A.3
Ruggiu, M.4
Eom, T.5
Marney, C.B.6
Wang, H.7
Licatalosi, D.D.8
Fak, J.J.9
Darnell, R.B.10
-
119
-
-
12344252023
-
Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo.
-
Arlotta P, Molyneaux BJ, Chen J, Inoue J, Kominami R, Macklis JD. Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo. Neuron 2005, 45:207-221.
-
(2005)
Neuron
, vol.45
, pp. 207-221
-
-
Arlotta, P.1
Molyneaux, B.J.2
Chen, J.3
Inoue, J.4
Kominami, R.5
Macklis, J.D.6
-
120
-
-
38149129457
-
A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.
-
Cahoy JD, Emery B, Kaushal A, Foo LC, Zamanian JL, Christopherson KS, Xing Y, Lubischer JL, Krieg PA, Krupenko SA, et al. A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J Neurosci 2008, 28:264-278.
-
(2008)
J Neurosci
, vol.28
, pp. 264-278
-
-
Cahoy, J.D.1
Emery, B.2
Kaushal, A.3
Foo, L.C.4
Zamanian, J.L.5
Christopherson, K.S.6
Xing, Y.7
Lubischer, J.L.8
Krieg, P.A.9
Krupenko, S.A.10
-
121
-
-
33344470365
-
FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains.
-
Lobo MK, Karsten SL, Gray M, Geschwind DH, Yang XW. FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains. Nat Neurosci 2006, 9:443-452.
-
(2006)
Nat Neurosci
, vol.9
, pp. 443-452
-
-
Lobo, M.K.1
Karsten, S.L.2
Gray, M.3
Geschwind, D.H.4
Yang, X.W.5
-
122
-
-
29444452573
-
Molecular taxonomy of major neuronal classes in the adult mouse forebrain.
-
Sugino K, Hempel CM, Miller MN, Hattox AM, Shapiro P, Wu C, Huang ZJ, Nelson SB. Molecular taxonomy of major neuronal classes in the adult mouse forebrain. Nat Neurosci 2006, 9:99-107.
-
(2006)
Nat Neurosci
, vol.9
, pp. 99-107
-
-
Sugino, K.1
Hempel, C.M.2
Miller, M.N.3
Hattox, A.M.4
Shapiro, P.5
Wu, C.6
Huang, Z.J.7
Nelson, S.B.8
-
123
-
-
34249307504
-
Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling.
-
Trimarchi JM, Stadler MB, Roska B, Billings N, Sun B, Bartch B, Cepko CL. Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling. J Comp Neurol 2007, 502:1047-1065.
-
(2007)
J Comp Neurol
, vol.502
, pp. 1047-1065
-
-
Trimarchi, J.M.1
Stadler, M.B.2
Roska, B.3
Billings, N.4
Sun, B.5
Bartch, B.6
Cepko, C.L.7
-
124
-
-
67249089012
-
Development and diversification of retinal amacrine interneurons at single cell resolution.
-
Cherry TJ, Trimarchi JM, Stadler MB, Cepko CL. Development and diversification of retinal amacrine interneurons at single cell resolution. Proc Natl Acad Sci U S A 2009, 106:9495-9500.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9495-9500
-
-
Cherry, T.J.1
Trimarchi, J.M.2
Stadler, M.B.3
Cepko, C.L.4
-
125
-
-
46949102316
-
The transcriptome of retinal Muller glial cells.
-
Roesch K, Jadhav AP, Trimarchi JM, Stadler MB, Roska B, Sun BB, Cepko CL. The transcriptome of retinal Muller glial cells. J Comp Neurol 2008, 509: 225-238.
-
(2008)
J Comp Neurol
, vol.509
, pp. 225-238
-
-
Roesch, K.1
Jadhav, A.P.2
Trimarchi, J.M.3
Stadler, M.B.4
Roska, B.5
Sun, B.B.6
Cepko, C.L.7
-
126
-
-
55449103144
-
Application of a translational profiling approach for the comparative analysis of CNS cell types.
-
Doyle JP, Dougherty JD, Heiman M, Schmidt EF, Stevens TR, Ma G, Bupp S, Shrestha P, Shah RD, Doughty ML, et al. Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell 2008, 135:749-762.
-
(2008)
Cell
, vol.135
, pp. 749-762
-
-
Doyle, J.P.1
Dougherty, J.D.2
Heiman, M.3
Schmidt, E.F.4
Stevens, T.R.5
Ma, G.6
Bupp, S.7
Shrestha, P.8
Shah, R.D.9
Doughty, M.L.10
-
127
-
-
55449107738
-
A translational profiling approach for the molecular characterization of CNS cell types.
-
Heiman M, Schaefer A, Gong S, Peterson JD, Day M, Ramsey KE, Suarez-Farinas M, Schwarz C, Stephan DA, Surmeier DJ, et al. A translational profiling approach for the molecular characterization of CNS cell types. Cell 2008, 135:738-748.
-
(2008)
Cell
, vol.135
, pp. 738-748
-
-
Heiman, M.1
Schaefer, A.2
Gong, S.3
Peterson, J.D.4
Day, M.5
Ramsey, K.E.6
Suarez-Farinas, M.7
Schwarz, C.8
Stephan, D.A.9
Surmeier, D.J.10
-
128
-
-
43549109877
-
Isolation of neuronal chromatin from brain tissue.
-
Jiang Y, Matevossian A, Huang HS, Straubhaar J, Akbarian S. Isolation of neuronal chromatin from brain tissue. BMC Neurosci 2008, 9:42.
-
(2008)
BMC Neurosci
, vol.9
, pp. 42
-
-
Jiang, Y.1
Matevossian, A.2
Huang, H.S.3
Straubhaar, J.4
Akbarian, S.5
-
129
-
-
77955967051
-
A simple method for gene expression and chromatin profiling of individual cell types within a tissue.
-
Deal RB, Henikoff S. A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Dev Cell 2010, 18:1030-1040.
-
(2010)
Dev Cell
, vol.18
, pp. 1030-1040
-
-
Deal, R.B.1
Henikoff, S.2
-
130
-
-
58149214356
-
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells.
-
Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, et al. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 2009, 30:155-167.
-
(2009)
Immunity
, vol.30
, pp. 155-167
-
-
Wei, G.1
Wei, L.2
Zhu, J.3
Zang, C.4
Hu-Li, J.5
Yao, Z.6
Cui, K.7
Kanno, Y.8
Roh, T.Y.9
Watford, W.T.10
-
131
-
-
77957928404
-
Human brain evolution: harnessing the genomics ®evolution to link genes, cognition, and behavior.
-
Konopka G, Geschwind DH. Human brain evolution: harnessing the genomics ®evolution to link genes, cognition, and behavior. Neuron 2010, 68:231-244.
-
(2010)
Neuron
, vol.68
, pp. 231-244
-
-
Konopka, G.1
Geschwind, D.H.2
-
132
-
-
0242268390
-
Elevated gene expression levels distinguish human from non-human primate brains.
-
Caceres M, Lachuer J, Zapala MA, Redmond JC, Kudo L, Geschwind DH, Lockhart DJ, Preuss TM, Barlow C. Elevated gene expression levels distinguish human from non-human primate brains. Proc Natl Acad Sci U S A 2003, 100:13030-13035.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 13030-13035
-
-
Caceres, M.1
Lachuer, J.2
Zapala, M.A.3
Redmond, J.C.4
Kudo, L.5
Geschwind, D.H.6
Lockhart, D.J.7
Preuss, T.M.8
Barlow, C.9
-
133
-
-
0037066542
-
Intra- and interspecific variation in primate gene expression patterns.
-
Enard W, Khaitovich P, Klose J, Zollner S, Heissig F, Giavalisco P, Nieselt-Struwe K, Muchmore E, Varki A, Ravid R, et al. Intra- and interspecific variation in primate gene expression patterns. Science 2002, 296: 340-343.
-
(2002)
Science
, vol.296
, pp. 340-343
-
-
Enard, W.1
Khaitovich, P.2
Klose, J.3
Zollner, S.4
Heissig, F.5
Giavalisco, P.6
Nieselt-Struwe, K.7
Muchmore, E.8
Varki, A.9
Ravid, R.10
-
134
-
-
22144447840
-
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
-
Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Paabo S. Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 2005, 309:1850-1854.
-
(2005)
Science
, vol.309
, pp. 1850-1854
-
-
Khaitovich, P.1
Hellmann, I.2
Enard, W.3
Nowick, K.4
Leinweber, M.5
Franz, H.6
Weiss, G.7
Lachmann, M.8
Paabo, S.9
-
135
-
-
4444287699
-
Regional patterns of gene expression in human and chimpanzee brains.
-
Khaitovich P, Muetzel B, She X, Lachmann M, Hellmann I, Dietzsch J, Steigele S, Do HH, Weiss G, Enard W, et al. Regional patterns of gene expression in human and chimpanzee brains. Genome Res 2004, 14: 1462-1473.
-
(2004)
Genome Res
, vol.14
, pp. 1462-1473
-
-
Khaitovich, P.1
Muetzel, B.2
She, X.3
Lachmann, M.4
Hellmann, I.5
Dietzsch, J.6
Steigele, S.7
Do, H.H.8
Weiss, G.9
Enard, W.10
-
136
-
-
76049088399
-
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
-
Nowick K, Gernat T, Almaas E, Stubbs L. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proc Natl Acad Sci U S A 2009, 106: 22358-22363.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 22358-22363
-
-
Nowick, K.1
Gernat, T.2
Almaas, E.3
Stubbs, L.4
-
137
-
-
76549115951
-
Evolution in health and medicine Sackler colloquium: evolution of the human lifespan and diseases of aging: roles of infection, inflammation, and nutrition.
-
Finch CE. Evolution in health and medicine Sackler colloquium: evolution of the human lifespan and diseases of aging: roles of infection, inflammation, and nutrition. Proc Natl Acad Sci U S A 2010, 107(Suppl 1):1718-1724.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.SUPPL. 1
, pp. 1718-1724
-
-
Finch, C.E.1
-
138
-
-
47049120305
-
Tauopathy with paired helical filaments in an aged chimpanzee.
-
Rosen RF, Farberg AS, Gearing M, Dooyema J, Long PM, Anderson DC, Davis-Turak J, Coppola G, Geschwind DH, Pare JF, et al. Tauopathy with paired helical filaments in an aged chimpanzee. J Comp Neurol 2008, 509:259-270.
-
(2008)
J Comp Neurol
, vol.509
, pp. 259-270
-
-
Rosen, R.F.1
Farberg, A.S.2
Gearing, M.3
Dooyema, J.4
Long, P.M.5
Anderson, D.C.6
Davis-Turak, J.7
Coppola, G.8
Geschwind, D.H.9
Pare, J.F.10
-
139
-
-
65249099621
-
Transcriptional neoteny in the human brain.
-
Somel M, Franz H, Yan Z, Lorenc A, Guo S, Giger T, Kelso J, Nickel B, Dannemann M, Bahn S, et al. Transcriptional neoteny in the human brain. Proc Natl Acad Sci U S A 2009, 106:5743-5748.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 5743-5748
-
-
Somel, M.1
Franz, H.2
Yan, Z.3
Lorenc, A.4
Guo, S.5
Giger, T.6
Kelso, J.7
Nickel, B.8
Dannemann, M.9
Bahn, S.10
-
140
-
-
77956275374
-
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain.
-
Somel M, Guo S, Fu N, Yan Z, Hu HY, Xu Y, Yuan Y, Ning Z, Hu Y, Menzel C, et al. MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain. Genome Res 2010, 20:1207-1218.
-
(2010)
Genome Res
, vol.20
, pp. 1207-1218
-
-
Somel, M.1
Guo, S.2
Fu, N.3
Yan, Z.4
Hu, H.Y.5
Xu, Y.6
Yuan, Y.7
Ning, Z.8
Hu, Y.9
Menzel, C.10
-
141
-
-
33646568791
-
Positive selection on gene expression in the human brain.
-
Khaitovich P, Tang K, Franz H, Kelso J, Hellmann I, Enard W, Lachmann M, Paabo S. Positive selection on gene expression in the human brain. Curr Biol 2006, 16:R356-R358.
-
(2006)
Curr Biol
, vol.16
-
-
Khaitovich, P.1
Tang, K.2
Franz, H.3
Kelso, J.4
Hellmann, I.5
Enard, W.6
Lachmann, M.7
Paabo, S.8
-
142
-
-
34547731978
-
Genome-wide expression profiling of lymphoblastoid cell lines distinguishes different forms of autism and reveals shared pathways.
-
Nishimura Y, Martin CL, Vazquez-Lopez A, Spence SJ, Alvarez-Retuerto AI, Sigman M, Steindler C, Pellegrini S, Schanen NC, Warren ST, et al. Genome-wide expression profiling of lymphoblastoid cell lines distinguishes different forms of autism and reveals shared pathways. Hum Mol Genet 2007, 16:1682-1698.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 1682-1698
-
-
Nishimura, Y.1
Martin, C.L.2
Vazquez-Lopez, A.3
Spence, S.J.4
Alvarez-Retuerto, A.I.5
Sigman, M.6
Steindler, C.7
Pellegrini, S.8
Schanen, N.C.9
Warren, S.T.10
-
143
-
-
66349087284
-
Gene expression profiling of lymphoblasts from autistic and nonaffected sib pairs: altered pathways in neuronal development and steroid biosynthesis.
-
Hu VW, Nguyen A, Kim KS, Steinberg ME, Sarachana T, Scully MA, Soldin SJ, Luu T, Lee NH. Gene expression profiling of lymphoblasts from autistic and nonaffected sib pairs: altered pathways in neuronal development and steroid biosynthesis. PLoS One 2009, 4:e5775.
-
(2009)
PLoS One
, vol.4
-
-
Hu, V.W.1
Nguyen, A.2
Kim, K.S.3
Steinberg, M.E.4
Sarachana, T.5
Scully, M.A.6
Soldin, S.J.7
Luu, T.8
Lee, N.H.9
-
144
-
-
37349002507
-
Gene expression changes in children with autism.
-
Gregg JP, Lit L, Baron CA, Hertz-Picciotto I, Walker W, Davis RA, Croen LA, Ozonoff S, Hansen R, Pessah IN, et al. Gene expression changes in children with autism. Genomics 2008, 91:22-29.
-
(2008)
Genomics
, vol.91
, pp. 22-29
-
-
Gregg, J.P.1
Lit, L.2
Baron, C.A.3
Hertz-Picciotto, I.4
Walker, W.5
Davis, R.A.6
Croen, L.A.7
Ozonoff, S.8
Hansen, R.9
Pessah, I.N.10
-
145
-
-
66349137661
-
Gene expression profiling differentiates autism case-controls and phenotypic variants of autism spectrum disorders: evidence for circadian rhythm dysfunction in severe autism.
-
Hu VW, Sarachana T, Kim KS, Nguyen A, Kulkarni S, Steinberg ME, Luu T, Lai Y, Lee NH. Gene expression profiling differentiates autism case-controls and phenotypic variants of autism spectrum disorders: evidence for circadian rhythm dysfunction in severe autism. Autism Res 2009, 2:78-97.
-
(2009)
Autism Res
, vol.2
, pp. 78-97
-
-
Hu, V.W.1
Sarachana, T.2
Kim, K.S.3
Nguyen, A.4
Kulkarni, S.5
Steinberg, M.E.6
Luu, T.7
Lai, Y.8
Lee, N.H.9
-
146
-
-
78751689926
-
Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines.
-
Sarachana T, Zhou R, Chen G, Manji HK, Hu VW. Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines. Genome Med 2010, 2:23.
-
(2010)
Genome Med
, vol.2
, pp. 23
-
-
Sarachana, T.1
Zhou, R.2
Chen, G.3
Manji, H.K.4
Hu, V.W.5
-
147
-
-
0033637841
-
Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex.
-
Mirnics K, Middleton FA, Marquez A, Lewis DA, Levitt P. Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex. Neuron 2000, 28:53-67.
-
(2000)
Neuron
, vol.28
, pp. 53-67
-
-
Mirnics, K.1
Middleton, F.A.2
Marquez, A.3
Lewis, D.A.4
Levitt, P.5
-
148
-
-
70450223147
-
Analysis of gene expression in two large schizophrenia cohorts identifies multiple changes associated with nerve terminal function.
-
Maycox PR, Kelly F, Taylor A, Bates S, Reid J, Logendra R, Barnes MR, Larminie C, Jones N, Lennon M, et al. Analysis of gene expression in two large schizophrenia cohorts identifies multiple changes associated with nerve terminal function. Mol Psychiatry 2009, 14:1083-1094.
-
(2009)
Mol Psychiatry
, vol.14
, pp. 1083-1094
-
-
Maycox, P.R.1
Kelly, F.2
Taylor, A.3
Bates, S.4
Reid, J.5
Logendra, R.6
Barnes, M.R.7
Larminie, C.8
Jones, N.9
Lennon, M.10
-
149
-
-
12744278205
-
Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis.
-
Iwamoto K, Bundo M, Kato T. Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis. Hum Mol Genet 2005, 14:241-253.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 241-253
-
-
Iwamoto, K.1
Bundo, M.2
Kato, T.3
-
150
-
-
43849100264
-
Altered gene expression in the superior temporal gyrus in schizophrenia.
-
Bowden NA, Scott RJ, Tooney PA. Altered gene expression in the superior temporal gyrus in schizophrenia. BMC Genomics 2008, 9:199.
-
(2008)
BMC Genomics
, vol.9
, pp. 199
-
-
Bowden, N.A.1
Scott, R.J.2
Tooney, P.A.3
-
151
-
-
77949426688
-
A novel microRNA and transcription factor mediated regulatory network in schizophrenia.
-
Guo AY, Sun J, Jia P, Zhao Z. A novel microRNA and transcription factor mediated regulatory network in schizophrenia. BMC Syst Biol 2010, 4:10.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 10
-
-
Guo, A.Y.1
Sun, J.2
Jia, P.3
Zhao, Z.4
-
152
-
-
70349570737
-
Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients.
-
Saris CG, Horvath S, van Vught PW, van Es MA, Blauw HM, Fuller TF, Langfelder P, DeYoung J, Wokke JH, Veldink JH, et al. Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients. BMC Genomics 2009, 10:405.
-
(2009)
BMC Genomics
, vol.10
, pp. 405
-
-
Saris, C.G.1
Horvath, S.2
van Vught, P.W.3
van Es, M.A.4
Blauw, H.M.5
Fuller, T.F.6
Langfelder, P.7
DeYoung, J.8
Wokke, J.H.9
Veldink, J.H.10
-
153
-
-
77955411499
-
Gene network disruptions and neurogenesis defects in the adult Ts1Cje mouse model of Down syndrome.
-
Hewitt CA, Ling KH, Merson TD, Simpson KM, Ritchie ME, King SL, Pritchard MA, Smyth GK, Thomas T, Scott HS, et al. Gene network disruptions and neurogenesis defects in the adult Ts1Cje mouse model of Down syndrome. PLoS One 2010, 5:e11561.
-
(2010)
PLoS One
, vol.5
-
-
Hewitt, C.A.1
Ling, K.H.2
Merson, T.D.3
Simpson, K.M.4
Ritchie, M.E.5
King, S.L.6
Pritchard, M.A.7
Smyth, G.K.8
Thomas, T.9
Scott, H.S.10
-
154
-
-
77955514552
-
Gene expression profiling in progressively MPTP-lesioned macaques reveals molecular pathways associated with sporadic Parkinson's disease.
-
Ohnuki T, Nakamura A, Okuyama S, Nakamura S. Gene expression profiling in progressively MPTP-lesioned macaques reveals molecular pathways associated with sporadic Parkinson's disease. Brain Res 2010, 1346:26-42.
-
(2010)
Brain Res
, vol.1346
, pp. 26-42
-
-
Ohnuki, T.1
Nakamura, A.2
Okuyama, S.3
Nakamura, S.4
-
155
-
-
75149195336
-
The transcriptional network for mesenchymal transformation of brain tumours.
-
Carro MS, Lim WK, Alvarez MJ, Bollo RJ, Zhao X, Snyder EY, Sulman EP, Anne SL, Doetsch F, Colman H, et al. The transcriptional network for mesenchymal transformation of brain tumours. Nature 2010, 463:318-325.
-
(2010)
Nature
, vol.463
, pp. 318-325
-
-
Carro, M.S.1
Lim, W.K.2
Alvarez, M.J.3
Bollo, R.J.4
Zhao, X.5
Snyder, E.Y.6
Sulman, E.P.7
Anne, S.L.8
Doetsch, F.9
Colman, H.10
-
156
-
-
73649123907
-
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.
-
Verhaak RG, Hoadley KA, Purdom E, Wang V, Qi Y, Wilkerson MD, Miller CR, Ding L, Golub T, Mesirov JP, et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 2010, 17:98-110.
-
(2010)
Cancer Cell
, vol.17
, pp. 98-110
-
-
Verhaak, R.G.1
Hoadley, K.A.2
Purdom, E.3
Wang, V.4
Qi, Y.5
Wilkerson, M.D.6
Miller, C.R.7
Ding, L.8
Golub, T.9
Mesirov, J.P.10
-
157
-
-
52949127312
-
An integrated genomic analysis of human glioblastoma multiforme.
-
Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, et al. An integrated genomic analysis of human glioblastoma multiforme. Science 2008, 321: 1807-1812.
-
(2008)
Science
, vol.321
, pp. 1807-1812
-
-
Parsons, D.W.1
Jones, S.2
Zhang, X.3
Lin, J.C.4
Leary, R.J.5
Angenendt, P.6
Mankoo, P.7
Carter, H.8
Siu, I.M.9
Gallia, G.L.10
-
158
-
-
77951836633
-
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis.
-
Baranzini SE, Mudge J, van Velkinburgh JC, Khankhanian P, Khrebtukova I, Miller NA, Zhang L, Farmer AD, Bell CJ, Kim RW, et al. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature 2010, 464:1351-1356.
-
(2010)
Nature
, vol.464
, pp. 1351-1356
-
-
Baranzini, S.E.1
Mudge, J.2
van Velkinburgh, J.C.3
Khankhanian, P.4
Khrebtukova, I.5
Miller, N.A.6
Zhang, L.7
Farmer, A.D.8
Bell, C.J.9
Kim, R.W.10
-
159
-
-
41349090105
-
Generation of human induced pluripotent stem cells from dermal fibroblasts.
-
Lowry WE, Richter L, Yachechko R, Pyle AD, Tchieu J, Sridharan R, Clark AT, Plath K. Generation of human induced pluripotent stem cells from dermal fibroblasts. Proc Natl Acad Sci U S A 2008, 105: 2883-2888.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2883-2888
-
-
Lowry, W.E.1
Richter, L.2
Yachechko, R.3
Pyle, A.D.4
Tchieu, J.5
Sridharan, R.6
Clark, A.T.7
Plath, K.8
-
160
-
-
36248966518
-
Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
-
Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, Tomoda K, Yamanaka S. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 2007, 131:861-872.
-
(2007)
Cell
, vol.131
, pp. 861-872
-
-
Takahashi, K.1
Tanabe, K.2
Ohnuki, M.3
Narita, M.4
Ichisaka, T.5
Tomoda, K.6
Yamanaka, S.7
-
161
-
-
38049187707
-
Reprogramming of human somatic cells to pluripotency with defined factors.
-
Park IH, Zhao R, West JA, Yabuuchi A, Huo H, Ince TA, Lerou PH, Lensch MW, Daley GQ. Reprogramming of human somatic cells to pluripotency with defined factors. Nature 2008, 451:141-146.
-
(2008)
Nature
, vol.451
, pp. 141-146
-
-
Park, I.H.1
Zhao, R.2
West, J.A.3
Yabuuchi, A.4
Huo, H.5
Ince, T.A.6
Lerou, P.H.7
Lensch, M.W.8
Daley, G.Q.9
-
162
-
-
50149098605
-
Induced pluripotent stem cells generated from patients with ALS can be differentiated into motor neurons.
-
Dimos JT, Rodolfa KT, Niakan KK, Weisenthal LM, Mitsumoto H, Chung W, Croft GF, Saphier G, Leibel R, Goland R, et al. Induced pluripotent stem cells generated from patients with ALS can be differentiated into motor neurons. Science 2008, 321: 1218-1221.
-
(2008)
Science
, vol.321
, pp. 1218-1221
-
-
Dimos, J.T.1
Rodolfa, K.T.2
Niakan, K.K.3
Weisenthal, L.M.4
Mitsumoto, H.5
Chung, W.6
Croft, G.F.7
Saphier, G.8
Leibel, R.9
Goland, R.10
-
163
-
-
62149125434
-
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling.
-
Chambers SM, Fasano CA, Papapetrou EP, Tomishima M, Sadelain M, Studer L. Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat Biotechnol 2009, 27: 275-280.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 275-280
-
-
Chambers, S.M.1
Fasano, C.A.2
Papapetrou, E.P.3
Tomishima, M.4
Sadelain, M.5
Studer, L.6
-
164
-
-
61349100729
-
Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors.
-
Soldner F, Hockemeyer D, Beard C, Gao Q, Bell GW, Cook EG, Hargus G, Blak A, Cooper O, Mitalipova M, et al. Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors. Cell 2009, 136:964-977.
-
(2009)
Cell
, vol.136
, pp. 964-977
-
-
Soldner, F.1
Hockemeyer, D.2
Beard, C.3
Gao, Q.4
Bell, G.W.5
Cook, E.G.6
Hargus, G.7
Blak, A.8
Cooper, O.9
Mitalipova, M.10
-
165
-
-
58249110796
-
Induced pluripotent stem cells from a spinal muscular atrophy patient.
-
Ebert AD, Yu J, Rose FF, Jr. Mattis VB, Lorson CL, Thomson JA, Svendsen CN. Induced pluripotent stem cells from a spinal muscular atrophy patient. Nature 2009, 457:277-280.
-
(2009)
Nature
, vol.457
, pp. 277-280
-
-
Ebert, A.D.1
Yu, J.2
Rose, F.F.3
Mattis, V.B.4
Lorson, C.L.5
Thomson, J.A.6
Svendsen, C.N.7
-
166
-
-
77649162059
-
Direct conversion of fibroblasts to functional neurons by defined factors.
-
Vierbuchen T, Ostermeier A, Pang ZP, Kokubu Y, Sudhof TC, Wernig M. Direct conversion of fibroblasts to functional neurons by defined factors. Nature 2010, 463:1035-1041.
-
(2010)
Nature
, vol.463
, pp. 1035-1041
-
-
Vierbuchen, T.1
Ostermeier, A.2
Pang, Z.P.3
Kokubu, Y.4
Sudhof, T.C.5
Wernig, M.6
-
167
-
-
77956495710
-
Transcriptional regulatory networks associated with self-renewal and differentiation of neural stem cells.
-
Yun SJ, Byun K, Bhin J, Oh JH, Nhung le TH, Hwang D, Lee B. Transcriptional regulatory networks associated with self-renewal and differentiation of neural stem cells. J Cell Physiol 2010, 225:337-347.
-
(2010)
J Cell Physiol
, vol.225
, pp. 337-347
-
-
Yun, S.J.1
Byun, K.2
Bhin, J.3
Oh, J.H.4
Nhung le, T.H.5
Hwang, D.6
Lee, B.7
-
168
-
-
77956883998
-
Genome-wide expression profiling and functional network analysis upon neuroectodermal conversion of human mesenchymal stem cells suggest HIF-1 and miR-124a as important regulators.
-
Maisel M, Habisch HJ, Royer L, Herr A, Milosevic J, Hermann A, Liebau S, Brenner R, Schwarz J, Schroeder M, et al. Genome-wide expression profiling and functional network analysis upon neuroectodermal conversion of human mesenchymal stem cells suggest HIF-1 and miR-124a as important regulators. Exp Cell Res 2010, 316:2760-2778.
-
(2010)
Exp Cell Res
, vol.316
, pp. 2760-2778
-
-
Maisel, M.1
Habisch, H.J.2
Royer, L.3
Herr, A.4
Milosevic, J.5
Hermann, A.6
Liebau, S.7
Brenner, R.8
Schwarz, J.9
Schroeder, M.10
-
169
-
-
77950475726
-
Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy.
-
Lupski JR, Reid JG, Gonzaga-Jauregui C, Rio Deiros D, Chen DC, Nazareth L, Bainbridge M, Dinh H, Jing C, Wheeler DA, et al. Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy. N Engl J Med 2010, 362:1181-1191.
-
(2010)
N Engl J Med
, vol.362
, pp. 1181-1191
-
-
Lupski, J.R.1
Reid, J.G.2
Gonzaga-Jauregui, C.3
Rio Deiros, D.4
Chen, D.C.5
Nazareth, L.6
Bainbridge, M.7
Dinh, H.8
Jing, C.9
Wheeler, D.A.10
-
170
-
-
78049336905
-
Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations.
-
Bilguvar K, Ozturk AK, Louvi A, Kwan KY, Choi M, Tatli B, Yalnizoglu D, Tuysuz B, Caglayan AO, Gokben S, et al. Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations. Nature 2010, 467:207-210.
-
(2010)
Nature
, vol.467
, pp. 207-210
-
-
Bilguvar, K.1
Ozturk, A.K.2
Louvi, A.3
Kwan, K.Y.4
Choi, M.5
Tatli, B.6
Yalnizoglu, D.7
Tuysuz, B.8
Caglayan, A.O.9
Gokben, S.10
-
171
-
-
77649238270
-
Targeted capture and next-generation sequencing identifies C9orf75, encoding taperin, as the mutated gene in nonsyndromic deafness DFNB79.
-
Rehman AU, Morell RJ, Belyantseva IA, Khan SY, Boger ET, Shahzad M, Ahmed ZM, Riazuddin S, Khan SN, Friedman TB. Targeted capture and next-generation sequencing identifies C9orf75, encoding taperin, as the mutated gene in nonsyndromic deafness DFNB79. Am J Hum Genet 2010, 86:378-388.
-
(2010)
Am J Hum Genet
, vol.86
, pp. 378-388
-
-
Rehman, A.U.1
Morell, R.J.2
Belyantseva, I.A.3
Khan, S.Y.4
Boger, E.T.5
Shahzad, M.6
Ahmed, Z.M.7
Riazuddin, S.8
Khan, S.N.9
Friedman, T.B.10
-
172
-
-
73349122330
-
Transgenic microRNA inhibition with spatiotemporal specificity in intact organisms.
-
Loya CM, Lu CS, Van Vactor D, Fulga TA. Transgenic microRNA inhibition with spatiotemporal specificity in intact organisms. Nat Methods 2009, 6:897-903.
-
(2009)
Nat Methods
, vol.6
, pp. 897-903
-
-
Loya, C.M.1
Lu, C.S.2
Van Vactor, D.3
Fulga, T.A.4
-
173
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis.
-
Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Graf S, Johnson N, Herrero J, Tomazou EM, et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol 2008, 26:779-785.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
Graf, S.7
Johnson, N.8
Herrero, J.9
Tomazou, E.M.10
-
174
-
-
77955433253
-
Whole genome DNA methylation analysis based on high throughput sequencing technology.
-
Li N, Ye M, Li Y, Yan Z, Butcher LM, Sun J, Han X, Chen Q, Zhang X, Wang J. Whole genome DNA methylation analysis based on high throughput sequencing technology. Methods 2010, 52:203-212.
-
(2010)
Methods
, vol.52
, pp. 203-212
-
-
Li, N.1
Ye, M.2
Li, Y.3
Yan, Z.4
Butcher, L.M.5
Sun, J.6
Han, X.7
Chen, Q.8
Zhang, X.9
Wang, J.10
-
175
-
-
77957344240
-
AutoMeDIP-seq: a high-throughput, whole genome, DNA methylation assay.
-
Butcher LM, Beck S. AutoMeDIP-seq: a high-throughput, whole genome, DNA methylation assay. Methods 2010, 52:223-231.
-
(2010)
Methods
, vol.52
, pp. 223-231
-
-
Butcher, L.M.1
Beck, S.2
-
176
-
-
67149141899
-
Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins.
-
Fernandez E, Collins MO, Uren RT, Kopanitsa MV, Komiyama NH, Croning MD, Zografos L, Armstrong JD, Choudhary JS, Grant SG. Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins. Mol Syst Biol 2009, 5:269.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 269
-
-
Fernandez, E.1
Collins, M.O.2
Uren, R.T.3
Kopanitsa, M.V.4
Komiyama, N.H.5
Croning, M.D.6
Zografos, L.7
Armstrong, J.D.8
Choudhary, J.S.9
Grant, S.G.10
-
177
-
-
77957009779
-
Quantitative proteomics of the Cav2 channel nano-environments in the mammalian brain.
-
Muller CS, Haupt A, Bildl W, Schindler J, Knaus HG, Meissner M, Rammner B, Striessnig J, Flockerzi V, Fakler B, et al. Quantitative proteomics of the Cav2 channel nano-environments in the mammalian brain. Proc Natl Acad Sci U S A 2010, 107:14950-14957.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14950-14957
-
-
Muller, C.S.1
Haupt, A.2
Bildl, W.3
Schindler, J.4
Knaus, H.G.5
Meissner, M.6
Rammner, B.7
Striessnig, J.8
Flockerzi, V.9
Fakler, B.10
-
178
-
-
77953933808
-
Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics.
-
Chakrabarti L, Zahra R, Jackson SM, Kazemi-Esfarjani P, Sopher BL, Mason AG, Toneff T, Ryu S, Shaffer S, Kansy JW, et al. Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics. Neuron 2010, 66:835-847.
-
(2010)
Neuron
, vol.66
, pp. 835-847
-
-
Chakrabarti, L.1
Zahra, R.2
Jackson, S.M.3
Kazemi-Esfarjani, P.4
Sopher, B.L.5
Mason, A.G.6
Toneff, T.7
Ryu, S.8
Shaffer, S.9
Kansy, J.W.10
-
179
-
-
77954095160
-
In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons.
-
Dieterich DC, Hodas JJ, Gouzer G, Shadrin IY, Ngo JT, Triller A, Tirrell DA, Schuman EM. In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons. Nat Neurosci 2010, 13: 897-905.
-
(2010)
Nat Neurosci
, vol.13
, pp. 897-905
-
-
Dieterich, D.C.1
Hodas, J.J.2
Gouzer, G.3
Shadrin, I.Y.4
Ngo, J.T.5
Triller, A.6
Tirrell, D.A.7
Schuman, E.M.8
-
180
-
-
69249089272
-
Neuroproteomics: understanding the molecular organization and complexity of the brain.
-
Bayes A, Grant SG. Neuroproteomics: understanding the molecular organization and complexity of the brain. Nat Rev Neurosci 2009, 10:635-646.
-
(2009)
Nat Rev Neurosci
, vol.10
, pp. 635-646
-
-
Bayes, A.1
Grant, S.G.2
-
181
-
-
73849145104
-
A global view of protein expression in human cells, tissues, and organs.
-
Ponten F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Bjorling E, Hober S, Kampf C, et al. A global view of protein expression in human cells, tissues, and organs. Mol Syst Biol 2009, 5:337.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 337
-
-
Ponten, F.1
Gry, M.2
Fagerberg, L.3
Lundberg, E.4
Asplund, A.5
Berglund, L.6
Oksvold, P.7
Bjorling, E.8
Hober, S.9
Kampf, C.10
-
182
-
-
77950900465
-
Systematic discovery of nonobvious human disease models through orthologous phenotypes.
-
McGary KL, Park TJ, Woods JO, Cha HJ, Wallingford JB, Marcotte EM. Systematic discovery of nonobvious human disease models through orthologous phenotypes. Proc Natl Acad Sci U S A 2010, 107: 6544-6549.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 6544-6549
-
-
McGary, K.L.1
Park, T.J.2
Woods, J.O.3
Cha, H.J.4
Wallingford, J.B.5
Marcotte, E.M.6
-
183
-
-
73149109513
-
Harnessing gene expression to identify the genetic basis of drug resistance.
-
Chen BJ, Causton HC, Mancenido D, Goddard NL, Perlstein EO, Pe'er D. Harnessing gene expression to identify the genetic basis of drug resistance. Mol Syst Biol 2009, 5:310.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 310
-
-
Chen, B.J.1
Causton, H.C.2
Mancenido, D.3
Goddard, N.L.4
Perlstein, E.O.5
Pe'er, D.6
-
184
-
-
77956214538
-
Describing the brain in autism in five dimensions-magnetic resonance imaging-assisted diagnosis of autism spectrum disorder using a multiparameter classification approach.
-
Ecker C, Marquand A, Mourao-Miranda J, Johnston P, Daly EM, Brammer MJ, Maltezos S, Murphy CM, Robertson D, Williams SC, et al. Describing the brain in autism in five dimensions-magnetic resonance imaging-assisted diagnosis of autism spectrum disorder using a multiparameter classification approach. J Neurosci 2010, 30:10612-10623.
-
(2010)
J Neurosci
, vol.30
, pp. 10612-10623
-
-
Ecker, C.1
Marquand, A.2
Mourao-Miranda, J.3
Johnston, P.4
Daly, E.M.5
Brammer, M.J.6
Maltezos, S.7
Murphy, C.M.8
Robertson, D.9
Williams, S.C.10
|