메뉴 건너뛰기




Volumn 49, Issue 10, 2011, Pages 3568-3575

Inadequacies of minimum spanning trees in molecular epidemiology

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BOOTSTRAPPING; BORDETELLA PERTUSSIS; CAMPYLOBACTER COLI; CANDIDA ALBICANS; CONTROLLED STUDY; DATA ANALYSIS; DNA SEQUENCE; GENETIC ALGORITHM; GOLD STANDARD; HEPATITIS C VIRUS; IXODES SCAPULARIS; MATHEMATICAL COMPUTING; MATHEMATICAL PARAMETERS; MICROBIAL POPULATION DYNAMICS; MINIMUM SPANNING TREE; MOLECULAR EPIDEMIOLOGY; MULTILOCUS SEQUENCE TYPING; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; OBSERVATIONAL STUDY; POPULATION STRUCTURE; PRIORITY JOURNAL; RELIABILITY; STAPHYLOCOCCUS AUREUS; STREPTOCOCCUS PNEUMONIAE; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 80053498320     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00919-11     Document Type: Article
Times cited : (45)

References (25)
  • 1
    • 46849112263 scopus 로고    scopus 로고
    • Molecular epidemiology of pneumococci obtained from Gambian children aged 2-29 months with invasive pneumococcal disease during a trial of a 9-valent pneumococcal conjugate vaccine
    • Antonio, M., et al. 2008. Molecular epidemiology of pneumococci obtained from Gambian children aged 2-29 months with invasive pneumococcal disease during a trial of a 9-valent pneumococcal conjugate vaccine. BMC Infect. Dis. 8:81.
    • (2008) BMC Infect. Dis. , vol.8 , pp. 81
    • Antonio, M.1
  • 3
    • 0036204680 scopus 로고    scopus 로고
    • Usefulness of multilocus sequence typing for characterization of clinical isolates of Candida albicans
    • DOI 10.1128/JCM.40.4.1290-1297.2002
    • Bougnoux, M.-E., S. Morand, and C. d'Enfert. 2002. Usefulness of multilocus sequence typing for characterization of clinical isolates of Candida albicans. J. Clin. Microbiol. 40:1290-1297. (Pubitemid 34279891)
    • (2002) Journal of Clinical Microbiology , vol.40 , Issue.4 , pp. 1290-1297
    • Bougnoux, M.-E.1    Morand, S.2    D'Enfert, C.3
  • 4
    • 4544373206 scopus 로고    scopus 로고
    • Graphviz and Dynagraph - Static and dynamic graph drawing tools
    • M. Junger and P. Mutzel (ed.), Springer Verlag, Berlin, Germany
    • Ellson, J., E. R. Gasner, E. Koutsofios, S. C. North, and G. Woodhull. 2004. Graphviz and Dynagraph - static and dynamic graph drawing tools, p. 127-148. In M. Junger and P. Mutzel (ed.), Graph drawing software. Springer Verlag, Berlin, Germany.
    • (2004) Graph Drawing Software , pp. 127-148
    • Ellson, J.1    Gasner, E.R.2    Koutsofios, E.3    North, S.C.4    Woodhull, G.5
  • 5
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): An integrated software package for population genetics data analysis
    • Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
    • (2005) Evol. Bioinform. Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 6
    • 0028069723 scopus 로고
    • Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: Molecular variance parsimony
    • Excoffier, L., and P. E. Smouse. 1994. Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics 136:343-359. (Pubitemid 24016698)
    • (1994) Genetics , vol.136 , Issue.1 , pp. 343-359
    • Excoffier, L.1    Smouse, P.E.2
  • 7
    • 34447120219 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Dominant markers and null alleles
    • DOI 10.1111/j.1471-8286.2007.01758.x
    • Falush, D., M. Stephens, and J. K. Pritchard. 2007. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol. Ecol. Notes 7:574-578. (Pubitemid 47035522)
    • (2007) Molecular Ecology Notes , vol.7 , Issue.4 , pp. 574-578
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 8
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data
    • DOI 10.1128/JB.186.5.1518-1530.2004
    • Feil, E. J., B. C. Li, D. M. Aanensen, W. P. Hanage, and B. G. Spratt. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530. (Pubitemid 38248742)
    • (2004) Journal of Bacteriology , vol.186 , Issue.5 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 9
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 0002726668 scopus 로고
    • On the history of the minimum spanning tree problem
    • Graham, R. L., and P. Hell. 1985. On the history of the minimum spanning tree problem. Ann. Hist. Comput. 7:43-57.
    • (1985) Ann. Hist. Comput. , vol.7 , pp. 43-57
    • Graham, R.L.1    Hell, P.2
  • 11
    • 78049513291 scopus 로고    scopus 로고
    • Spoligotype-based comparative population structure analysis of multidrug-resistant and isoniazid-monoresistant Mycobacterium tuberculosis complex clinical isolates in Poland
    • Jagielski, T., E. Augustynowicz-Kopec, T. Zozio, N. Rastogi, and Z. Zwolska. 2010. Spoligotype-based comparative population structure analysis of multidrug-resistant and isoniazid-monoresistant Mycobacterium tuberculosis complex clinical isolates in Poland. J. Clin. Microbiol. 48:3899-3909.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 3899-3909
    • Jagielski, T.1    Augustynowicz-Kopec, E.2    Zozio, T.3    Rastogi, N.4    Zwolska, Z.5
  • 12
    • 70350674995 scopus 로고
    • On the shortest spanning tree of a graph and the traveling salesman problem
    • Kruskal, J. B. 1956. On the shortest spanning tree of a graph and the traveling salesman problem. Proc. Am. Math. Soc. 7:48-50.
    • (1956) Proc. Am. Math. Soc. , vol.7 , pp. 48-50
    • Kruskal, J.B.1
  • 13
    • 78650062347 scopus 로고    scopus 로고
    • Genetic diversity of human isolates of Mycobacterium bovis assessed by spoligotyping and variable number tandem repeat genotyping
    • Lari, N., N. Bimbi, L. Rindi, E. Tortoli, and C. Garzelli. 2011. Genetic diversity of human isolates of Mycobacterium bovis assessed by spoligotyping and variable number tandem repeat genotyping. Infect. Genet. Evol. 11:175-180.
    • (2011) Infect. Genet. Evol. , vol.11 , pp. 175-180
    • Lari, N.1    Bimbi, N.2    Rindi, L.3    Tortoli, E.4    Garzelli, C.5
  • 14
    • 70350752454 scopus 로고    scopus 로고
    • Genetic epidemiology of the sudden oak death pathogen Phytophthora ramorum in California
    • Mascheretti, S., P. J. Croucher, M. Kozanitas, L. Baker, and M. Garbelotto. 2009. Genetic epidemiology of the sudden oak death pathogen Phytophthora ramorum in California. Mol. Ecol. 18:4577-4590.
    • (2009) Mol. Ecol. , vol.18 , pp. 4577-4590
    • Mascheretti, S.1    Croucher, P.J.2    Kozanitas, M.3    Baker, L.4    Garbelotto, M.5
  • 15
    • 44249084217 scopus 로고    scopus 로고
    • Reconstruction of the Sudden Oak Death epidemic in California through microsatellite analysis of the pathogen Phytophthora ramorum
    • DOI 10.1111/j.1365-294X.2008.03773.x
    • Mascheretti, S., P. J. Croucher, A. Vettraino, S. Prospero, and M. Garbelotto. 2008. Reconstruction of the sudden oak death epidemic in California through microsatellite analysis of the pathogen Phytophthora ramorum. Mol. Ecol. 17:2755-2768. (Pubitemid 351724938)
    • (2008) Molecular Ecology , vol.17 , Issue.11 , pp. 2755-2768
    • Mascheretti, S.1    Croucher, P.J.P.2    Vettraino, A.3    Prospero, S.4    Garbelotto, M.5
  • 16
    • 70449592118 scopus 로고    scopus 로고
    • Phylogeographical and molecular characterization of an emerging Mycobacterium tuberculosis clone in Trinidad and Tobago
    • Millet, J., S. Baboolal, P. E. Akpaka, D. Ramoutar, and N. Rastogi. 2009. Phylogeographical and molecular characterization of an emerging Mycobacterium tuberculosis clone in Trinidad and Tobago. Infect. Genet. Evol. 9:1336-1344.
    • (2009) Infect. Genet. Evol. , vol.9 , pp. 1336-1344
    • Millet, J.1    Baboolal, S.2    Akpaka, P.E.3    Ramoutar, D.4    Rastogi, N.5
  • 17
    • 52949129115 scopus 로고    scopus 로고
    • Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus
    • Nubel, U., et al. 2008. Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus. Proc. Natl. Acad. Sci. U. S. A. 105:14130-14135.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 14130-14135
    • Nubel, U.1
  • 18
    • 84911584312 scopus 로고
    • Shortest connection networks and some generalizations
    • Prim, R. C. 1957. Shortest connection networks and some generalizations. Bell Syst. Tech. J. 36:1389-1401.
    • (1957) Bell Syst. Tech. J. , vol.36 , pp. 1389-1401
    • Prim, R.C.1
  • 19
    • 0036200448 scopus 로고    scopus 로고
    • Geographic uniformity of the Lyme disease spirochete (Borrelia burgdorferi) and its shared history with tick vector (Ixodes scapularis) in the Northeastern United States
    • Qiu, W. G., D. E. Dykhuizen, M. S. Acosta, and B. J. Luft. 2002. Geographic uniformity of the Lyme disease spirochete (Borrelia burgdorferi) and its shared history with tick vector (Ixodes scapularis) in the Northeastern United States. Genetics 160:833-849.
    • (2002) Genetics , vol.160 , pp. 833-849
    • Qiu, W.G.1    Dykhuizen, D.E.2    Acosta, M.S.3    Luft, B.J.4
  • 20
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 21
    • 0000871830 scopus 로고
    • The estimation of total fish populations of a lake
    • Schnabel, Z. E. 1938. The estimation of total fish populations of a lake. Am. Math. Mon. 45:348-352.
    • (1938) Am. Math. Mon. , vol.45 , pp. 348-352
    • Schnabel, Z.E.1
  • 22
    • 3843099223 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s
    • DOI 10.1128/JB.186.16.5496-5505.2004
    • Schouls, L. M., H. G. Van der Heide, L. Vauterin, P. Vauterin, and F. R. Mooi. 2004. Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s. J. Bacteriol. 186:5496-5505. (Pubitemid 39038152)
    • (2004) Journal of Bacteriology , vol.186 , Issue.16 , pp. 5496-5505
    • Schouls, L.M.1    Van Der, H.H.G.J.2    Vauterin, L.3    Vauterin, P.4    Mooi, F.R.5
  • 23
    • 4644291611 scopus 로고    scopus 로고
    • Use of the minimum spanning tree model for molecular epidemiological investigation of a nosocomial outbreak of hepatitis C virus infection
    • DOI 10.1128/JCM.42.9.4230-4236.2004
    • Spada, E., et al. 2004. Use of the minimum spanning tree model for molecular epidemiological investigation of a nosocomial outbreak of hepatitis C virus infection. J. Clin. Microbiol. 42:4230-4236. (Pubitemid 39296149)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.9 , pp. 4230-4236
    • Spada, E.1    Sagliocca, L.2    Sourdis, J.3    Garbuglia, A.R.4    Poggi, V.5    De Fusco, C.6    Mele, A.7
  • 24
    • 33747347295 scopus 로고    scopus 로고
    • Molecular epidemiologic investigation of Campylobacter coli in swine production systems, using multilocus sequence typing
    • Thakur, S., W. E. Morgan Morrow, J. A. Funk, P. B. Bahnson, and W. A. Gebreyes. 2006. Molecular epidemiologic investigation of Campylobacter coli in swine production systems, using multilocus sequence typing. Appl. Environ. Microbiol. 72:5666-5669.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5666-5669
    • Thakur, S.1    Morgan Morrow, W.E.2    Funk, J.A.3    Bahnson, P.B.4    Gebreyes, W.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.