Mapping of QTLs involved in resistance to rice blast (magnaporthe grisea) using oryza minuta introgression lines

Czech Journal of Genetics and Plant Breeding

Volumn 47, Issue 3, 2011, Pages 85-94

  Rahman, Lutfor ^a   Khanam, Sakina ^a,b   Roh, Jae Hwan ^c   Koh, Hee Jong ^a  

^a Seoul National University   (South Korea)

^b BANGLADESH INSTITUTE OF NUCLEAR AGRICULTURE   (Bangladesh)

^c National Institute of Animal Science   (South Korea)

Author keywords

Blast; Introgression from oryza minuta; Quantitative trait locus (QTL); Rice

Indexed keywords

FUNGI; JAPONICA; MAGNAPORTHE GRISEA; ORYZA; ORYZA MINUTA; ORYZA SATIVA;

EID: 80053379992     PISSN: 12121975     EISSN: None     Source Type: Journal    
DOI: 10.17221/19/2011-cjgpb     Document Type: Article

References (60)

1. Ahn S.N., Kim Y.K., Hong H.C., Han S.S., Kwon S.J., Choi H.C., Moon H.P., McCouch S.R. (2000): Molecular mapping of a new gene for resistance to rice blast (Pyricularia grisea Sacc.). Euphytica, 116: 17-22.
2. Asaga K. (1981): A procedure for evaluation field resistance to blast in rice varieties. Japan Central Agriculture Experimental Station, 35: 51-138. (in Japanese with English summary)
3. Ballini E., Berruyer R., Morel J.B., Lebrun M.H., Notleghem J.L., Tharreau D. (2007): Modern elite rice verities of the 'Green Revolution' have retained a large introgression from wild rice around the Pi33 rice blast resistance locus. New Phytologist, 175: 340-350.
4. Bonman J.M. (1992): Durable resistance to rice blast disease-environmental influence. Euphytica, 63: 115-123.
5. Brar D.S., Khush G.S. (1997): Alien introgression in rice. Plant Molecular Biology, 35: 35-47.
6. Brar D.S., Khush G.S. (2002): Transferring genes from wild species into rice. In: Kang M.S. (ed.): Quantitative Genetics, Genomics and Plant Breeding. CAB International, Wallingford, 197-217.
7. Chen X., Temnykh S., Xu Y., Cho Y.G., McCouch S.R. (1997): Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.).Theoretical and Applied Genetics, 95: 553-567.
8. Chen H., Wang S., Xing Y., Xu C., Hayes P.M., Zhang Q. (2003): Comparative analysis of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley. Proceedings of the National Academy of Sciences of the United States of America, 100: 2544-2549.
9. Cho Y.C., Choi I.S., Baek M.K., Yanoria M.J.T., Suh J.P., Roh J.H., Kim Y.G., Jena K.K., Choi H.C., Hwang H.G. (2004): Analysis of resistance genes to blast (Magnaporthe griesea) in the Japonica rice cultivar, Ilpumbyeo. Korean Journal of Breeding, 36: 81-89.
10. Cho Y.C., Jeung J.U., Park H.J., Yang C.I., Choi Y.H., Choi I.B., Won Y.J., Yang S.J., Kim Y.G. (2008): Haplotype diversity and durability of resistance genes to blast in Korean Japonica rice varieties. Journal of Crop Science and Biotechnology, 11: 205-214.
11. Fukuoka S., Okuno K. (2001): QTL analysis and mapping of pi21, a recessive gene for field resistance to rice blast in Japanese upland rice. Theoretical and Applied Genetics, 103: 185-190.
12. Gowda M., Barman-Roy S., Chatoo B.B. (2006): Molecular mapping of a novel blast resistance gene Pi38 in rice using SSLP and AFLP markers. Plant Breeding, 125: 596-599.
13. Harushima Y., Yano M., Shomura A., Sato M., Shimano T., Kuboki Y., Yamamoto T., Lin S.Y., Antonio B.A., Parco A., Kajiya H., Huang N., Tamamoto K., Nagamura Y., Kurata N., Khush G.S., Sasaki T. (1998): A high-density rice genetic map with 2 275 markers using a single F2 population. Genetics, 148: 479-494.
14. Hayashi T., Ukai Y. (1999): Method of QTL mapping in an F2 population using phenotype means of F3 lines. Breeding Science, 49: 105-114.
15. Hayashi K., Hashimoto N., Daigen M., Ashikawa I. (2004): Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus. Theoretical and Applied Genetics, 108: 1212-1220.
16. He Y.Y., Li J., Li C., Kiyosawa S., Higashi T., Horisue N. (1989): Gene analysis of blast resistance of Yunnan upland rice variety, Haonaihuan. Oryza, 26: 173-182.
17. Higashi T., Kushibuchi K. (1978): Genetic analysis of field resistance to leaf blast (Pyricularia oryzae) in Japan. Japanese Journal of Breeding, 28: 277-286.
18. Higashi T, Saito S. (1985): Linkage group of field resistance genes upland rice variety Sensho to leaf blast caused by Pyricularia oryzae CAV. Japanese Journal of Breeding, 35: 438-448.
19. Hirano T. (1994): Studies on the field resistance of rice varieties to blast disease. Bulletin Akita Preferential College of Agriculture, 20: 1-41.
20. Ito R., Nakane A. (1973): Basic studies on the rice breeding strategy for durable resistance to blast. In: Kenkyuseika, Vol. 63, Agriculture, Forestry and Fisheries Research Council, Ministry of Agriculture, Forestry and Fisheries of Japan, Tokyo, 291-309.
21. Jeung J.U., Kim B.R., Cho Y.C., Han S.S., Moon H.P., Lee Y.T., Jena K.K. (2007): A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance on rice. Theoretical and Applied Genetics, 115: 1163-1177.
22. Jia Y., Mcadams S.A., Bryan G.T., Hershey H.P., Valent B., (2000): Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO Journal, 19: 4004-4014.
23. Jieyun Z., Wu J., Chai R. (1999): DNA marker based gene mapping for leaf and neck blast resistance and verification of gene effects in rice. In: Proc. General Meeting Int. Program on Rice Biotechnology, Thailand, 297.
24. Kiyosawa S. (1981): Genetic analysis of blast resistance. Oryza, 18: 196-203.
25. Kosambi D.D. (1944): The estimation of map distances from recombination values. Annals of Eugenics, 12: 172-175.
26. Lander E.S., Green P., Abrahhamson J., Barlow A., Daly M.J. (1987): MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1: 174-181.
27. Li Y.B., Wu C.J., Jiang G.H., Wang L.Q., He Y.Q. (2007): Dynamic analysis of rice blast resistance for the assessment of genetic and environmental effects. Plant Breeding, 126: 541-547.
28. Li Y.B., Wu C.J., Xing Y.H., Chen H.L., He Y.Q. (2008): Dynamic QTL analysis for rice blast resistance under natural infections conditions. Australian Journal of Crop Science, 2: 73-82.
29. Lin S.Y., Sasaki T., Yano M. (1998): Mapping of quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using back cross inbred lines. Theoretical and Applied Genetics, 96: 997-1003.
30. Liu G., Lu G., Zeng L., Wang G.L. (2002): Two broad-spectrum blast resistance genes, Pi9(t) and Pi2(t), are physically linked on rice chromosome 6. Molecular Genetics and Genomics, 267: 472-480.
31. Loan L.C., Du P.V., Li Z. (2003): Identification of genes conferring resistance to some Philippine and Vietnamese races of blast. Omon Rice, 11: 49-62.
32. Maruyama K., Kikuchi F., Yokoo M. (1983): Gene analysis of field resistance to rice blast (Pyricularia oryzae) in Rikuto Norin Mochi 4 and its use for breeding. Bulletin of National Agricultural Science, 35: 1-31. (in Japanese)
33. McCouch S.R., Teytelman L., Xu Y., Lobos K.B., Clare K. (2002): Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Research, 9: 257-270.
34. Mew T.V., Parco S., Hittalmani T., Inukai R., Nelson R.S., Huang N. (1994): Fine-mapping of major genes for blast resistance in rice. Rice Genetics Newsletter, 11: 126-128.
35. Miyamoto M., Yano M., Hirasawa H. (2001): Mapping quantitative trait loci conferring blast field resistance in the Japanese upland rice variety Kahei. Breeding Science, 51: 257-261.
36. Murray M.G., Thompson W.F. (1980): Rapid isolation of high molecular-weight plant DNA. Nucleic Acids Research, 8: 4321-4325.
37. Nagato Y., Yoshimura A. (1998): Report of the committee on gene symbolization, nomenclature and linkage group. Rice Genetics Newsletter, 15: 13-74.
38. Nelson J.C. (1997): QGENE: software for marker-based genomic analysis and breeding. Molecular Breeding, 3: 239-245.
39. Ou S.H. (1985): Rice Disease. 2nd Ed. Commonwealth Mycological Institute, Kew.
40. Pan Q.H., Hu Z.D., Takatoshi T., Wang L. (2003): Fine mapping of the rice blast resistance gene Pi15, linked to Pii, on rice chromosome 9. Acta Botanica Sinica, 45: 871-877.
41. Rahman M.L. (2008): Identification of QTLs for some agronomic traits and brown planthopper resistance in rice introgressed from Oryza minuta. [PhD Thesis.] Seoul National University, Korea.
42. Rahman M.L., Jiang W., Chu S.H., Qiao Y., Ham T.H., Woo M.O., Lee J., Khanam M.S., Chin J.H., Jeung J.U., Brar D.S., Jena K.K., Koh H.J. (2009): High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t) and Bph21(t), originating from Oryza minuta. Theoretical and Applied Genetics, 119: 1237-1246.
43. Remington D.L., Thornsberry J.M., Matsuoka Y., Wilson I.M., Whitt S.R., Doebley J., Kresovich S., Goodman M.M., Buckler E.S. (2001): Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proceedings of the National Academy of Sciences of the United States of America, 98: 11479-11484.
44. Roca W., Tohme J., Correa-Victoria F.J. (1996): Turning priorities into feasible programs. In: Proc. Policy Seminar on Agricultural Biotechnology for Latin America, Peru, 74-80.
45. Sallaud C., Lorieux M., Roumen E., Tharreau D., Berruver R., Svestasrani P., Garsmeur O., Ghesquiere A. Notteghem J.L. (2003): Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy. Theoretical and Applied Genetics, 106: 794-803.
46. Sato H., Takeuchi Y., Hirabayashi H., Nemoto H., Hirayama M., Kato H., Imbe T., Ando I. (2006): Mapping QTLs for field resistance to rice blast in the Japanese upland rice variety Norin 12. Breeding Science, 56: 415-418.
47. Sirithunya P., Tragoongung S., Vanavichit A., Pain N., Vongsaprom C., Toojinda T. (2002): Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa). DNA Research, 9: 79-88.
48. Stam P. (1993): Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. The Plant Journal, 5: 739-744.
49. Tabien R.E., Li Z., Paterson A.H., Marchetti M.A., Stansel J.W., Pinson S.R.M. (2002): Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties. Theoretical and Applied Genetics, 105: 313-324.
50. Talukder Z.I., Tharreau D., Price A.H. (2004): Quantitative trait loci analysis suggests that partial resistance to rice blast is mostly determined by race specific interactions. New Phytologist, 162: 197-209.
51. Temnykh S., Park W.D., Ayres N., Cartinhour S., Hauck N., Lipovich L., Cho Y.G., Ishii T., Mccouch S.R. (2000): Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.).Theoretical and Applied Genetics, 100: 697-712.
52. Valnet B., Farrall L., Chumley F.G. (1991): Magnaporthe grisea genes for pathogenicity and virulence identified through a series of backcross. Genetics, 127: 87-101.
53. Wang D.L., Zhu J., Li Z.K., Paterson A.H. (1999): Mapping QTLs with epistatic effets and QTL × environment interactions by mixed linear model approaches. Theoretical and Applied Genetics, 99: 1255-1264.
54. Wang G., Mackill D.J., Bonman M., Mccouch S.R., Champoux M.C., Nelson R.J. (1994): RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics, 136: 1421-1434.
55. Wu J.Z., Maehara T., Shimokawa T., Yamamoto S., Harada C. (2002): A comprehensive rice transcript map containing 6591 ex-pressed sequence tag sited. Plant Cell, 14: 525-535.
56. Wu J.L., Fan Y.Y., Li D.B., Zheng K.L., Leung H., Zhuang J.Y. (2005): Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates. Theoretical and Applied Genetics, 111: 50-56.
57. Yu Z.H., Mackill D.J., Bonman J.M., Mccouch S.R., Guiderdoni E., Notteghem J.L., Tanksley S.D. (1996): Molecular mapping of genes for resistance to rice blast (Pyricularia grisea Sacc.). Theoretical and Applied Genetics, 93: 859-863.
58. Yunoki T., Ezuka A., Sakurai H., Shinoda H., Toriyama K. (1970): Studies on the varietal resistance to rice blast III. Testing methods for field resistance on young seedlings grown in greenhouse. Bulletin of Chugoku National Agriculture Experimental Station, 6: 1-19.
59. Zenbayashi K., Ashizawa T., Tani T., Koizumi S. (2002): Mapping of the QTL (quantitative trait locus) conferring partial resistance to leaf blast in rice cultivar Chubu 32. Theoretical and Applied Genetics, 104: 547-552.
60. Zhou T., Wang Y., Chen J.Q., Araki H., Jing Z., Jiang K., Shen J., Tian D. (2004): Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Molecular Genetics and Genomics, 271: 402-415.