Interaction of a two-transmembrane-helix peptide with lipid bilayers and dodecyl sulfate micelles

Biophysical Chemistry

Volumn 159, Issue 2-3, 2011, Pages 321-327

  Renthal, Robert ^a,b   Brancaleon, Lorenzo ^a   Peña, Isaac ^a   Silva, Frances ^a   Chen, Liao Y ^a  

^a UNIVERSITY OF TEXAS AT SAN ANTONIO   (United States)

^b Mays Cancer Center at UT Health San Antonio   (United States)

Author keywords

FRET; Membrane protein folding; Molecular dynamics simulation; SDS

Indexed keywords

BACTERIORHODOPSIN; DODECYL SULFATE; PHENOL; TRYPTOPHAN; TYROSINE; WATER;

ARTICLE; CRYSTAL STRUCTURE; FLOW KINETICS; FLUORESCENCE RESONANCE ENERGY TRANSFER; HALOBACTERIUM SALINARUM; HYDROGEN BOND; LIPID BILAYER; MICELLE; MOLECULAR DYNAMICS; MOLECULE; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEIN STRUCTURE; QUANTUM CHEMISTRY; SOLUBILIZATION;

ARCHAEAL PROTEINS; BACTERIORHODOPSINS; FLUORESCENCE RESONANCE ENERGY TRANSFER; HALOBACTERIUM SALINARUM; LIPID BILAYERS; MICELLES; MOLECULAR DYNAMICS SIMULATION; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; SODIUM DODECYL SULFATE; SPECTROMETRY, FLUORESCENCE;

EID: 80053345309     PISSN: 03014622     EISSN: 18734200     Source Type: Journal    
DOI: 10.1016/j.bpc.2011.08.005     Document Type: Article

References (41)

1. S. Faham, D. Yang, E. Bare, S. Yohannan, J.P. Whitelegge, and J.U. Bowie Side-chain contributions to membrane protein structure and stability Journal of Molecular Biology 335 2004 297 305 (Pubitemid 37494980)
2. P. Curnow, and P.J. Booth Combined kinetic and thermodynamic analysis of alpha-helical membrane protein unfolding Proceedings of the National Academy of Sciences of the United States of America 104 2007 18970 18975
3. K.R. MacKenzie, J.H. Prestegard, and D.M. Engelman A transmembrane helix dimer: structure and implications Science 276 1997 131 133 (Pubitemid 27161261)
4. D.V. Tulumello, and C.M. Deber SDS micelles as a membrane-mimetic environment for transmembrane segments Biochemistry 48 2009 12096 12103
5. V. Anbazhagan, F. Cymer, and D. Schneider Unfolding a transmembrane helix dimer: a FRET study in mixed micelles Archives of Biochemistry and Biophysics 495 2010 159 164
6. M.L. Riley, B.A. Wallace, S.L. Flitsch, and P.J. Booth Slow alpha helix formation during folding of a membrane protein Biochemistry 36 1997 192 196 (Pubitemid 27024692)
7. F.W. Lau, and J.U. Bowie A method for assessing the stability of a membrane protein Biochemistry 36 1997 5884 5892 (Pubitemid 27214941)
8. G.Q. Chen, and E. Gouaux Probing the folding and unfolding of wild-type and mutant forms of bacteriorhodopsin in micellar solutions: evaluation of reversible unfolding conditions Biochemistry 38 1999 15380 15387 (Pubitemid 129520372)
9. D.E. Otzen Folding of DsbB in mixed micelles: a kinetic analysis of the stability of a bacterial membrane protein Journal of Molecular Biology 330 2003 641 649
10. R. Renthal An unfolding story of helical transmembrane proteins Biochemistry 45 2006 14559 14566 (Pubitemid 44906972)
11. Y. Pan, L. Brown, and L. Konermann Mapping the structure of an integral membrane protein under semi-denaturing conditions by laser-induced oxidative labeling and mass spectrometry Journal of Molecular Biology 394 2009 968 981
12. B.D. Adair, and D.M. Engelman Glycophorin a helical transmembrane domains dimerize in phospholipid bilayers: a resonance energy transfer study Biochemistry 33 1994 5539 5544 (Pubitemid 24162990)
13. C. Choma, H. Gratkowski, J.D. Lear, and W.F. DeGrado Asparagine-mediated self-association of a model transmembrane helix Nature Structural Biology 7 2000 161 166 (Pubitemid 30082515)
14. Y. Yano, T. Takemoto, S. Kobayashi, H. Yasui, H. Sakurai, W. Ohashi, M. Niwa, S. Futaki, Y. Sugiura, and K. Matsuzaki Topological stability and self-association of a completely hydrophobic model transmembrane helix in lipid bilayers Biochemistry 41 2002 3073 3080 (Pubitemid 34184638)
15. S.J. Nannepaga, R. Gawalapu, D. Velasquez, and R. Renthal Estimation of helix-helix association free energy from partial unfolding of bacterioopsin Biochemistry 43 2004 550 559 (Pubitemid 38082579)
16. M. You, E. Li, W.C. Wimley, and K. Hristova Forster resonance energy transfer in liposomes: measurements of transmembrane helix dimerization in the native bilayer environment Analytical Biochemistry 340 2005 154 164 (Pubitemid 40404111)
17. M. Eisenhawer, S. Cattarinussi, A. Kuhn, and H. Vogel Fluorescence resonance energy transfer shows a close helix-helix distance in the transmembrane M13 procoat protein Biochemistry 40 2001 12321 12328 (Pubitemid 32959754)
18. D. Oesterhelt, and W. Stoeckenius Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane Methods in Enzymology 31 1974 667 678
19. G.E. Gerber, R.J. Anderegg, W.C. Herlihy, C.P. Gray, K. Biemann, and H.G. Khorana Partial primary structure of bacteriorhodopsin: sequencing methods for membrane proteins Proceedings of the National Academy of Sciences of the United States of America 76 1979 227 231 (Pubitemid 9081751)
20. T. Marti Refolding of bacteriorhodopsin from expressed polypeptide fragments Journal of Biological Chemistry 273 1998 9312 9322 (Pubitemid 28176226)
21. H. Sigrist, R.H. Wenger, E. Kislig, and M. Wuthrich Refolding of bacteriorhodopsin. Protease V8 fragmentation and chromophore reconstitution from proteolytic V8 fragments European Journal of Biochemistry 177 1988 125 133
22. S. Batzri, and E.D. Korn Single bilayer liposomes prepared without sonication Biochimica et Biophysica Acta 298 1973 1015 1019
23. J. Eisinger Intramolecular energy transfer in adrenocorticotropin Biochemistry 8 1969 3902 3908
24. C.N. Pace, F. Vajdos, L. Fee, G. Grimsley, and T. Gray How to measure and predict the molar absorption coefficient of a protein Protein Science 4 1995 2411 2423
25. R. Renthal, and P. Haas Effect of transmembrane helix packing on tryptophan and tyrosine environments in detergent-solubilized bacterio-opsin Journal of Protein Chemistry 15 1996 281 289 (Pubitemid 26179088)
26. H. Luecke, B. Schobert, H.T. Richter, J.P. Cartailler, and J.K. Lanyi Structure of bacteriorhodopsin at 1.55 A resolution Journal of Molecular Biology 291 1999 899 911
27. J. Kaylor, N. Bodner, S. Edridge, G. Yamin, D.P. Hong, and A.L. Fink Characterization of oligomeric intermediates in alpha-synuclein fibrillation: FRET studies of Y125W/Y133F/Y136F alpha-synuclein Journal of Molecular Biology 353 2005 357 372 (Pubitemid 41356722)
28. R. Braun, D.M. Engelman, and K. Schulten Molecular dynamics simulations of micelle formation around dimeric glycophorin a transmembrane helices Biophysical Journal 87 2004 754 763 (Pubitemid 39095058)
29. W. Humphrey, A. Dalke, and K. Schulten VMD: visual molecular dynamics Journal of Molecular Graphics 14 1996 33 38 27-38. (Pubitemid 26152973)
30. N. Kucerka, S. Tristram-Nagle, and J.F. Nagle Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains Journal of Membrane Biology 208 2005 193 202
31. J.C. Phillips, R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, C. Chipot, R.D. Skeel, L. Kale, and K. Schulten Scalable molecular dynamics with NAMD Journal of Computational Chemistry 26 2005 1781 1802 (Pubitemid 43078511)
32. A.D. MacKerell, D. Bashford, Bellott, R.L. Dunbrack, J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen, B. Prodhom, W.E. Reiher, B. Roux, M. Schlenkrich, J.C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus All-atom empirical potential for molecular modeling and dynamics studies of proteins The Journal of Physical Chemistry. B 102 1998 3586 3616 (Pubitemid 128576688)
33. S.E. Feller, and A.D. MacKerell An improved empirical potential energy function for molecular simulations of phospholipids The Journal of Physical Chemistry. B 104 2000 7510 7515
34. K.V. Pervushin, V. Orekhov, A.I. Popov, L. Musina, and A.S. Arseniev Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy European Journal of Biochemistry 219 1994 571 583 (Pubitemid 24053676)
35. M. Noronha, J.C. Lima, P. Lamosa, H. Santos, C. Maycock, R. Ventura, and A.L. Macanita Intramolecular fluorescence quenching of tyrosine by the peptide alpha-carbonyl group revisited The Journal of Physical Chemistry. A 108 2004 2155 2166
36. J. Luneberg, M. Widmann, M. Dathe, and T. Marti Secondary structure of bacteriorhodopsin fragments. External sequence constraints specify the conformation of transmembrane helices Journal of Biological Chemistry 273 1998 28822 28830 (Pubitemid 28507573)
37. D.K. Struck, D. Hoekstra, and R.E. Pagano Use of resonance energy transfer to monitor membrane fusion Biochemistry 20 1981 4093 4099
38. S.A. Asher, and Z.H. Chi UV Raman determination of the environment and solvent exposure of Tyr and Trp residues The Journal of Physical Chemistry. B 102 1998 9595 9602 (Pubitemid 128611879)
39. J.E. Whitaker, R.P. Haugland, D. Ryan, P.C. Hewitt, and F.G. Prendergast Fluorescent rhodol derivatives: versatile, photostable labels and tracers Analytical Biochemistry 207 1992 267 279 (Pubitemid 23144298)
40. B.Z. Packard, D.D. Toptygin, A. Komoriya, and L. Brand Profluorescent protease substrates: intramolecular dimers described by the exciton model Proceedings of the National Academy of Sciences of the United States of America 93 1996 11640 11645 (Pubitemid 26347175)
41. R. Koradi, M. Billeter, and K. Wuthrich MOLMOL: a program for display and analysis of macromolecular structures Journal of Molecular Graphics 14 1996 51 55 29-32. (Pubitemid 26152976)