DNA detection using functionalized conducting polymers

Methods in Molecular Biology

Volumn 751, Issue , 2011, Pages 437-452

  Travas Sejdic, Jadranka ^a   Peng, Hui ^b   Yu, Hsiao Hua ^c   Luo, Shyh Chyang ^c  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b EAST CHINA NORMAL UNIVERSITY   (China)

^c RIKEN   (Japan)

Author keywords

Biosensing; Conducting polymer thin films; DNA; Electrochemical detection; Fluorescent detection; Polypyrroles; Polythiophenes

Indexed keywords

DNA; POLYMER; BIOTIN; CARBOXYLIC ACID; FUSED HETEROCYCLIC RINGS; N TRIISOPROPYLSILYLPYRROLE; N-TRIISOPROPYLSILYLPYRROLE; OLIGODEOXYRIBONUCLEOTIDE; POLY(3,4 ETHYLENE DIOXYTHIOPHENE); POLY(3,4-ETHYLENE DIOXYTHIOPHENE); PYRROLE DERIVATIVE; SILANE DERIVATIVE; THIOPHENE DERIVATIVE;

BIOSENSOR; DNA DETERMINATION; FILM; MOLECULAR RECOGNITION; SIGNAL TRANSDUCTION; SURFACE PROPERTY; ARTICLE; CHEMISTRY; ELECTRIC CONDUCTIVITY; ELECTROCHEMISTRY; GENETIC PROCEDURES; LIGHT RELATED PHENOMENA; METABOLISM; METHODOLOGY; SPECTROFLUOROMETRY; SYNTHESIS;

BICYCLO COMPOUNDS, HETEROCYCLIC; BIOSENSING TECHNIQUES; BIOTIN; CARBOXYLIC ACIDS; DNA; ELECTRIC CONDUCTIVITY; ELECTROCHEMISTRY; OLIGODEOXYRIBONUCLEOTIDES; OPTICAL PROCESSES; POLYMERS; PYRROLES; SILANES; SPECTROMETRY, FLUORESCENCE; THIOPHENES;

EID: 80053319857     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-151-2_27     Document Type: Chapter

References (30)

1. Gooding, J. J. (2002) Electrochemical DNA hybridization biosensors. Electroanalysis 14, 1149-1156.
2. Christopoulos, T. K. (1999) Nucleic acid analysis. Anal. Chem. 71, 425R-438R.
3. Wang, J. (2002) Electrochemical nucleic acid biosensors. Anal. Chim. Acta 469, 63-71.
4. Wang, J. (2005) Carbon-nanotube based electrochemical biosensors: A review. Electroanalysis 17, 7-14.
5. Wang, J. (2000) From DNA biosensors to gene chips. Nucleic Acids Res. 28, 3011-3016.
6. Sassolas, A., Leca-Bouvier, B. D., and Blum, L. J. (2008) DNA biosensors and microarrays. Chem. Rev. 108, 109-139.
7. Katz, E. and Willner, I. (2003) Probing biomolecular interactions at conductive and semiconductive surfaces by impedance spectroscopy: Routes to impedimetric immunosensors, DNASensors, and enzyme biosensors. Electroanalysis 15, 913-947.
8. Kjallman, T. H. M., Peng, H., Soeller, C., and Travas-Sejdic, J. (2008) Effect of probe density and hybridization temperature on the response of an electrochemical hairpin-DNA sensor. Anal. Chem. 80, 9460-9466.
9. Fan, C., Plaxco, K. W., and Heeger, A. J. (2003) Electrochemical interrogation of conformational changes as a reagentless method for the sequence-specific detection of DNA. Proc. Natl. Acad. Sci. USA 100, 9134-9137.
10. Everett, W. R., Welch, T. L., Reed, L., and Fritschfaules, I. (1995) Potential-dependent stability of self-assembled organothiols on gold electrodes in methylene-chloride. Anal. Chem. 67, 292-298.
11. Beulen, M. W. J., Kastenberg, M. I., van Veggel, F., and Reinhoudt, D. N. (1998) Electrochemical stability of self-assembled monolayers on gold. Langmuir 14, 7463-7467.
12. Zhong, C. J. and Porter, M. D. (1997) Fine structure in the voltammetric desorption curves of alkanethiolate monolayers chemisorbed at gold. J. Electroanal. Chem. 425, 147-153.
13. Kirchmeyer, S., and Reuter, K. (2005) Scientific importance, properties and growing applications of poly(3,4-ethylenedioxythiophene). J. Mater. Chem. 15, 2077-2088.
14. Groenendaal, L., Zotti, G., Aubert, P. H., Waybright, S. M., and Reynolds, J. R. (2003) Electrochemistry of poly(3,4-alkylenedioxythiophene) derivatives. Adv. Mater. 15, 855-879.
15. Groenendaal, B. L., Jonas, F., Freitag, D., Pielartzik, H. and Reynolds, J. R. (2000) Poly(3,4-ethylenedioxythiophene) and its derivatives: Past, present, and future. Adv. Mater. 12, 481-494.
16. Pei, Q. B., Zuccarello, G., Ahlskog, M., and Inganas, O. (1994) Electrochromic and highly stable poly(3,4-ethylenedioxythiophene) switches between opaque blue-black and transparent sky blue. Polymer 35, 1347-1351.
17. Travas-Sejdic, J. and Soeller, C. (2008) Sensing genes using conducting polymers, nanoparticles, and nanotubes. In Handbook of Organic Electronics and Photonics, Volume 1 (Nalwa, H.S., ed.), American Scientific Publishers, Valencia, CA, pp. 365-403.
18. Luo, S. C., Ali, E. M., Tansil, N. C., Yu, H. H., Gao, S., Kantchev, E. A. B., and Ying, J. Y. (2008) Poly(3,4-ethylenedioxythiophene) (PEDOT) nanobiointerfaces: Thin, ultrasmooth, and functionalized PEDOT films with in vitro and in vivo biocompatibility. Langmuir 24, 8071-8077.
19. Peng, H., Soeller, C., Cannell, M. B., Bowmaker, G. A., Cooney, R. P., and Travas-Sejdic, J. (2006) Electrochemical detection of DNA hybridization amplified by nanoparticles. Biosens. Bioelectron. 21, 1727-1736.
20. Peng, H.; Soeller, C., Vigar, N., Kilmartin, P. A., Cannell, M. B., Bowmaker, G. A., Cooney, R. P. and Travas-Sejdic, J. (2005) Label-free electrochemical DNA sensor based on functionalized conducting copolymer. Biosens. Bioelectron. 20, 1821-1828.
21. Martin, D. C. (2007) Organic electronics: Polymers manipulate cells. Nat. Mater. 6, 626-627.
22. 2+ signaling in neuronal cells using an organic electronic ion pump. Nat. Mater. 6, 673-679.
23. Richardson-Burns, S. M., Hendricks, J. L., Foster, B., Povlich, L. K., Kim, D. H., and Martin, D. C. (2007) Polymerization of the conducting polymer poly(3,4-ethylenedioxythiophene) (PEDOT) around living neural cells. Biomaterials 28, 1539-1552.
24. Peng, H., Soeller, C., and Travas-Sejdic, J. (2007) Novel conducting polymers for DNA sensing. Macromolecules 40, 909-914.
25. Peng, H., Soeller, C., Vigar, N. A., Caprio, V., and Travas-Sejdic, J. (2007) Label-free detection of DNA hybridization based on a novel functionalized conducting polymer. Biosens. Bioelectron 22, 1868-1873.
26. Ali, E. M., Kantchev, E. A. B., Yu, H. H., and Ying, J. Y., (2007) Conductivity shift of polyethylenedioxythiophenes in aqueous solutions from side-chain charge perturbation. Macromolecules 40, 6025-6027.
27. Luo, S. C., Xie, H., Chen, N. Y. and Yu, H. H. (2009) Trinity DNA detection platform by ultrasmooth and functionalized PEDOT biointerfaces. ACS Appl. Mater. Interfaces 1, 1414-1419.
28. Lima, A., Schottland, P., Sadki, S., and Chevrot, C. (1998) Electropolymerization of 3,4-ethylenedioxythiophene and 3,4-ethylenedioxythiophene methanol in the presence of dodecylbenzenesulfonate. Synth. Met. 93, 33-41.
29. Gao, Z. Q., Binyamin, G., Kim, H. H., Barton, S. C., Zhang, Y. C., and Heller, A., (2002) Electrodeposition of redox polymers and coelectrodeposition of enzymes by coordinative crosslinking. Angew. Chem. Int. Ed. Engl. 41, 810-813.
30. Lassalle, N., Mailley, P., Vieil, E., Livache, T., Roget, A., Correia, J. P., and Abrantes, L. M. (2001) Electronically conductive polymer grafted with oligonucleotides as electrosensors of DNA: Preliminary study of real time monitoring by in situ techniques. J. Electroanal. Chem. 509, 48-57.