Recent long-distance transgene flow into wild populations conforms to historical patterns of gene flow in cotton (Gossypium hirsutum) at its centre of origin

Molecular Ecology

Volumn 20, Issue 19, 2011, Pages 4182-4194

  Wegier, A ^a,b   Pineyro Nelson A ^a,b,c   Alarcon J ^b,d   Galvez Mariscal A ^b,c   Alvarez Buylla E R ^a,b,c   Pinero D ^a,b  

^a INSTITUTO DE ECOLOGÍA   (Mexico)

^b INSTITUTO NACIONAL DE INVESTIGACIONES FORESTALES   (Mexico)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^d NONE   (Mexico)

Author keywords

Gossypium hirsutum; long distance gene flow; metapopulations; Mexico; transgene flow

Indexed keywords

RECOMBINANT PROTEIN; VEGETABLE PROTEIN;

ARTICLE; BAYES THEOREM; ENVIRONMENTAL PROTECTION; GENE FLOW; GENETICS; GEOGRAPHY; GOSSYPIUM; HAPLOTYPE; PHYSIOLOGY; SEED DISPERSAL; TRANSGENE;

BAYES THEOREM; CONSERVATION OF NATURAL RESOURCES; GENE FLOW; GEOGRAPHY; GOSSYPIUM; HAPLOTYPES; PLANT PROTEINS; RECOMBINANT PROTEINS; SEED DISPERSAL; TRANSGENES;

GOSSYPIUM HIRSUTUM; GOSSYPIUM THURBERI;

EID: 80053276472     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05258.x     Document Type: Article

References (72)

1. Anderson RP, Lew D, Peterson AT, (2003) Evaluating predictive models of species' distributions: criteria for selecting optimal models. Ecological Modeling, 162, 211-232. (Pubitemid 36400305)
2. Andersson MS, de Vicente CM, (2010) Gene Flow Between Crops and Their Wild Relatives, 564 pp. Johns Hopkins University, Baltimore.
3. Applequist WL, Cronn R, Wendel JF, (2001) Comparative development of fiber in wild and cultivated cotton. Evolution & Development, 3, 3-17. (Pubitemid 32143441)
4. Arnaud J-F, Fénart S, Godé C, Deledicque S, Touzet P, Cuguen J, (2009) Fine-scale geographical structure of genetic diversity in inland wild beet populations. Molecular Ecology, 18, 3201-3215.
5. Baltazar BM, Sanchez-Gonzalez JD, Cruz-Larios L, Schoper JB, (2005) Pollination between maize and teosinte: an important determinant of gene flow in Mexico. Theoretical and Applied Genetics, 110, 519-526. (Pubitemid 40564263)
6. Bartsch D, Lehnen M, Clegg J, Pohl-Orf M, Schuphan I, Ellstrand NC, (1999) Impact of gene flow from cultivated beet on genetic diversity of wild sea beet populations. Molecular Ecology, 8, 1733-1741. (Pubitemid 29514712)
7. Beasley JO, (1940) Hybridization of American 26 chromosome and Asiatic 13 chromosome species of Gossypium. Journal of Agricultural Research, 69, 175-181.
8. Beasley JO, (1942) Meiotic chromosome behavior in species hybrids, haploids, and induced polyploids of Gossypium. Genetics, 27, 25-54.
9. Beekman M, Ratnieks LF, (2000) Long-range foraging by the honey-bee, Apis mellifera L. Functional Ecology, 14, 490-496.
10. Broquet T, Petit EJ, (2009) Molecular estimation of dispersal for ecology and population genetics. Annual Review of Ecology, Evolution, and Systematics, 40, 193-216.
11. Brubaker CL, Wendel JF, (1994) Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs). American Journal of Botany, 81, 1309-1326. (Pubitemid 2151314)
12. CERA (2010) GM Crop Database. Center for Environmental Risk Assessment (CERA), ILSI Research Foundation, Washington DC. (Accessed on February 1, 2011).
13. Clement M, Posada D, Crandall K, (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
14. Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (2003) México: Imagen desde el espacio. CONABIO, México, DF.
15. Corander J, Marttinen P, Sirén J, Tang J, (2008) Enhanced Bayesian modeling in BAPS software for learning genetic structures of populations. BMC Bioinformatics, 9, 539.
16. Dyer RJ, (2009) GeneticStudio: a suite of programs for the spatial analysis of genetic marker data. Molecular Ecology Resources, 9, 110-113.
17. Dyer RJ, Nason JD, (2004) Population graphs: the graph theoretic shape of genetic structure. Molecular Ecology, 13, 1713-1727. (Pubitemid 38847581)
18. Dyer JA, Taylor JE, (2008) A crop population perspective on maize seed systems in Mexico. Proceedings of the National Academy of Sciences, USA, 105, 470-475. (Pubitemid 351171732)
19. Dyer G, Serratos-Hernández A, Perales H, et al. (2009) Dispersal of transgenes through maize seed systems in Mexico. PLoS ONE, 4 (5), e5734.
20. Ebert D, Haag D, Kirkpatrick M, Riek M, Hottinger JW, Pajunen VI, (2002) A selective advantage to immigrant genes in a Daphnia metapopulation. Science, 295, 485-487.
21. Ehrlich R, Raven PH, (1969) Differentiation of populations. Science, 165, 1228-1232.
22. Ellstrand NC, (2003) Dangerous liaisons? When Cultivated Plants Mate With Their Wild Relatives, 244 pp. Johns Hopkins University, Baltimore.
23. Ellstrand NC, Garner LC, Hegde S, Guardagnuolo R, Blancas L, (2007) Spontaneous hybridization between maize and teosinte. Journal of Heredity, 98, 183-187. (Pubitemid 47356038)
24. Excoffier L, Lischer HEL, (2010) Arlequin suite v3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
25. FAOSTAT (2009) Statistical Databases. Food and Agriculture Organization of the United Nations, Rome, Italy. (accessed on February 1, 2011).
26. Fénart S, Austerlitz F, Cuguen J, Arnaud J-F, (2007) Long distance pollen-mediated gene flow at a landscape level: the weed beet as a case study. Molecular Ecology, 16, 3801-3813. (Pubitemid 47397329)
27. Freckleton RP, Watkinson A, (2002) Large-scale spatial dynamics of plants: metapopulations, regional ensembles and patchy populations. Ecology, 90, 419-434. (Pubitemid 34616942)
28. Freckleton RP, Watkinson AR, (2003) Are all plant populations metapopulations? Journal of Ecology, 91, 321-324. (Pubitemid 36453398)
29. Fryxell PA, (1979) The Natural History of the Cotton Tribe, 245 pp. Texas A & M University Press, College Station/London.
30. Hanski I, (1998) Metapopulation dynamics. Nature, 396, 41-49. (Pubitemid 28520441)
31. Hanski I, Gaggiotti O, (2004) Ecology, Genetics and Evolution of Metapopulations. Elsevier Academic Press, London, UK.
32. van Heerwaarden J, Van Eeuwijk FA, Ross-Ibarra J, (2009) Genetic diversity in a crop metapopulation. Heredity, 104, 28-39.
33. Honnay O, Jacquemyn H, Van Looy K, Vandepitte K, Breyne P, (2009) Temporal and spatial genetic variation in a metapopulation of the annual Erysimum cheiranthoides on stony river banks. Journal of Ecology, 97, 131-141.
34. JÃrgensen RB, Andersen B, (1994) Spontaneous hybridization between oilseed rape (Brassica napus) and weedy B. campestris (Brassicaceae). American Journal of Botany, 81, 1620-1626.
35. Kalinowsky ST, (2004) Counting alleles with rarefaction: private alleles and hierarchical sampling designs. Conservation Genetics, 5, 539-543.
36. Levins R, (1969) Some demographic and genetic consequences of environmental heterogeneity for biological control. Bulletin of the Entomological Society of America, 15, 237-240.
37. Londo JP, Chiang YC, Hung KH, Chiang TY, Schaal BA, (2006) Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. Proceedings of the National Academy of Sciences, USA, 103 (25), 9578-9583. (Pubitemid 43955867)
38. Manel S, Schwartz K, Luikart G, Taberlet P, (2003) Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology and Evolution, 18, 189-197. (Pubitemid 36345738)
39. McGregor SE, (1976) Insect Pollination of Cultivated Crop Plants. US Department of Agriculture, Agriculture Handbook, 496, 411.
40. Meirmans PG, Bousquet J, Isabel N, (2009) A metapopulation model for the introgression from genetically modified plants into their wild relatives. Evolutionary Applications, 2, 160-171. doi:.
41. Paetkau D, Slade R, Burdens M, Estoup A, (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55-65. (Pubitemid 38106473)
42. Palstra FP, O'connell MF, Ruzzante DE, (2007) Population structure and gene flow reversals in Atlantic salmon (Salmo salar) over contemporary and long-term temporal scales: effects of population size and life history. Molecular Ecology, 16, 4504-4522. (Pubitemid 47620528)
43. Petit RJ, Mousadirk A, Pons O, (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855. (Pubitemid 28395189)
44. Piñeyro-Nelson A, Van Heerwaarden J, Perales HR, et al. (2009) Transgenes in Mexican maize: molecular evidence and methodological considerations for GMO detection in landrace populations. Molecular Ecology, 18, 750-761.
45. Reddy OU, Pepper AE, Abdurakmonov I, et al. (2001) New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal Cotton Science, 5, 103-113. (Pubitemid 38908003)
46. Rogers DJ, Reid RE, Rogers JJ, Addison SJ, (2007) Prediction of the naturalization potential and weediness risk of transgenic cotton in Australia. Agriculture Ecosystems and Environment, 119, 177-189. (Pubitemid 44909286)
47. Rosenberg NA, Nordborg M, (2002) Genealogical trees, coalescent theory, and the analysis of genetic polymorphisms. Nature Reviews Genetics, 3, 380-390. (Pubitemid 34506719)
48. SAGARPA (2010) (Accessed on February 1, 2011).
49. Sahoo L, Schmidt JJ, Pedersen JF, Lee DJ, Lindquist JL, (2010) Growth and fitness components of wild x cultivated Sorghum bicolor (Poaceae) hybrids in Nebraska. American Journal Botany, 97, 1610-1617.
50. Sasu MA, Ferrari MJ, Du D, Winsor JA, Stephenson AG, (2009) Indirect costs of a nontarget pathogen mitigate the direct benefits of a virus-resistant transgene in wild Cucurbita. Proceedings of the National Academy of Sciences, USA, 106, 19067-19071.
51. Scachetti-Pereira R, (2001) Desktop GARP. (Accessed on July 2010).
52. Seelanan T, Schnabel A, Wendel JF, (1997) Congruence and consensus in the cotton tribe (Malvaceae). Systematic Botany, 22, 259-290. (Pubitemid 27493198)
53. Serratos-Hernández JA, Gómez-Olivares JL, Salinas-Arreortua N, Buendía-Rodríguez E, Islas-Gutiérrez F, de-Ita A, (2007) Transgenic proteins in maize in the soil conservation area of Federal District, México. Frontiers in Ecology and the Environment, 5, 247-252. (Pubitemid 46878807)
54. Simpson D, (1954) Natural cross-pollination in cotton. US Department of Agriculture Technical Bulletin, 1094.
55. Slatkin M, (1987) Gene flow and the geographic structure of natural populations. Science, 236, 787-792. (Pubitemid 17071150)
56. Smith C, Stephens S, (1971) Critical identification of Mexican archaeological cotton remains. Economic Botany, 25, 160-168.
57. Snow AA, Andersen B, Jorgensen RB, (1999) Costs of transgenic herbicide resistance introgressed from Brassica napus into weedy B. rapa. Molecular Ecology, 8, 605-615. (Pubitemid 29208112)
58. Stephens SG, (1958) Factors affecting seed dispersal in Gossypium and their possible evolutionary significance. North Carolina Agricultural Experiment Station Technical Bulletin, No. 131. 32 pp.
59. Stephens SG, (1966) The potentiality for long range oceanic dispersal of cotton seeds. The American Naturalist, 100, 199-210.
60. Stephens SG, Finkner MD, (1953) Natural crossing in cotton. Economic Botany, 7, 257-269.
61. Sul IW, Korban SS, (1996) A highly efficient method for isolating genomic DNA from plant tissues. Plant Tissue Culture Biotechnology, 2, 113-116.
62. Szpiech ZA, Jakobsson M, Rosenberg NA, (2008) ADZE: a rarefaction approach for counting alleles private to combinations of populations. Bioinformatics, 24, 2498-2504.
63. Templeton AR, Sing CF, (1993) 'A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659-669. (Pubitemid 23156958)
64. Traxler G, Godoy-Avila S, (2004) Transgenic cotton in Mexico. AgBioForum, 7, 57-62. (Pubitemid 39526768)
65. Viard F, Arnaud J-F, Delescluse M, Cuguen J, (2004) Tracing back seed and pollen flow within the crop-wild Beta vulgaris complex: genetic distinctiveness Vs. hot spots of hybridization over a regional scale. Molecular Ecology, 13, 1357-1364. (Pubitemid 38688890)
66. Weising K, Gardner RC, (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledenous angiosperms. Genome, 42, 9-19. (Pubitemid 29167282)
67. Wendel JF, (1989) New World tetraploid cottons contain Old World cytoplasm. Proceedings of the National Academy of Science of USA, 86, 4132-4136.
68. Wendel JF, Albert VA, (1992) Phylogenetics of the cotton genus (Gossypium L.): character-state weighted parsimony analysis of chloroplast DNA restriction site data and its systematic and biogeographic implications. Systematic Botany, 17, 115-143.
69. Wendel JF, Brubaker CL, Álvarez I, Cronn RC, Stewart J McD, (2009) Evolution and natural history of the cotton genus. In: Genetics and Genomics of cotton, Plant Genetics and Genomics: Crops and Models 3 (ed., Paterson AH,), pp. 1-20. Springer, New York.
70. Wendel JF, Brubaker CL, Seelanan T, (2010) The origin and evolution of Gossypium, Chapter 1. In: Physiology of Cotton (eds, Stewart JM, Oosterhuis D, Heitholt JJ, Mauney JR,), pp. 3-22. Springer, Netherlands.
71. ST doesn't equal 1/(4Nm+1). Heredity, 82, 117-125. (Pubitemid 29120325)
72. Wiley EO, McNyset KM, Peterson AT, Robins CR, Stewart AM, (2003) Niche modeling and geographic range predictions in the marine environment using a machine-learning algorithm. Oceanography, 16, 120-127. (Pubitemid 37261165)