-
1
-
-
0141903547
-
Boolean dynamics of networks with scale-free topology
-
Aldana, M. (2003). Boolean dynamics of networks with scale-free topology. Physica D, 185, 45-66.
-
(2003)
Physica D
, vol.185
, pp. 45-66
-
-
Aldana, M.1
-
2
-
-
0042808605
-
A natural class of robust networks
-
DOI 10.1073/pnas.1536783100
-
Aldana, M., & Cluzel, P. (2003). A natural class of robust networks. Proceedings of the National Academy of Sciences of the United States of America, 100, 8710-8714. (Pubitemid 36899163)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.15
, pp. 8710-8714
-
-
Aldana, M.1
Cluzel, P.2
-
3
-
-
27244432005
-
Boolean dynamics with random couplings
-
In E. Kaplan, J. E. Marsden, & K. R. Sreenivasan (Eds.). Berlin: Springer
-
Aldana-González, M., Coppersmith, S., & Kadanoff, L. P. (2003). Boolean dynamics with random couplings. In E. Kaplan, J. E. Marsden, & K. R. Sreenivasan (Eds.), Perspectives and problems in nonlinear science. A celebratory volume in honor of Lawrence Sirovich. Berlin: Springer.
-
(2003)
Perspectives and Problems in Nonlinear Science. A Celebratory Volume in Honor of Lawrence Sirovich
-
-
Aldana-González, M.1
Coppersmith, S.2
Kadanoff, L.P.3
-
5
-
-
49649117268
-
Critical dynamics in genetic regulatory networks: Examples from four kingdoms
-
Balleza, E., Alvarez-Buylla, E. R., Chaos, A., Kauffman, S., Shmulevich, I., & Aldana, M. (2008). Critical dynamics in genetic regulatory networks: Examples from four kingdoms. PLoS ONE, 3, e2456.
-
(2008)
PLoS ONE
, vol.3
-
-
Balleza, E.1
Alvarez-Buylla, E.R.2
Chaos, A.3
Kauffman, S.4
Shmulevich, I.5
Aldana, M.6
-
6
-
-
0000676885
-
The modular structure of Kauffman networks
-
PII S016727899700242X
-
Bastolla, U., & Parisi, G. (1998). The modular structure of Kauffman networks. Physica D: Nonlinear Phenomena, 115, 219-233. (Pubitemid 128676556)
-
(1998)
Physica D: Nonlinear Phenomena
, vol.115
, Issue.3-4
, pp. 219-233
-
-
Bastolla, U.1
Parisi, G.2
-
7
-
-
77957271217
-
Dynamic-module redundancy confers robustness to the gene regulatory network involved in hair patterning of Arabidopsis epidermis
-
Benítez, M., & Alvarez-Buylla, E. R. (2010). Dynamic-module redundancy confers robustness to the gene regulatory network involved in hair patterning of Arabidopsis epidermis. Biosystems, 102, 11-15.
-
(2010)
Biosystems
, vol.102
, pp. 11-15
-
-
Benítez, M.1
Alvarez-Buylla, E.R.2
-
9
-
-
1542699802
-
Critical computation, phase transitions, and hierarchical learning
-
In M. Yamaguti (Ed.), New York: Elsevier
-
Crutchfield, J. (1994). Critical computation, phase transitions, and hierarchical learning. In M. Yamaguti (Ed.), Towards the harnessing of chaos (pp. 29-46). New York: Elsevier.
-
(1994)
Towards the Harnessing of Chaos
, pp. 29-46
-
-
Crutchfield, J.1
-
11
-
-
78349243200
-
Information transfer among coupled random Boolean networks
-
In S. Bandini, S. Manzoni, H. Umeo, & G. Vizzari (Eds.), Berlin: Springer
-
Damiani, C., Kauffman, S., Serra, R., Villani, M., & Colacci, A. (2010). Information transfer among coupled random Boolean networks. In S. Bandini, S. Manzoni, H. Umeo, & G. Vizzari (Eds.), Cellular automata (pp. 1-11). Berlin: Springer.
-
(2010)
Cellular Automata
, pp. 1-11
-
-
Damiani, C.1
Kauffman, S.2
Serra, R.3
Villani, M.4
Colacci, A.5
-
12
-
-
84956252965
-
Random networks of automata: A simple annealed approximation
-
Derrida, B., & Pomeau, Y. (1986). Random networks of automata: A simple annealed approximation. Europhysics Letters, 1, 45-49.
-
(1986)
Europhysics Letters
, vol.1
, pp. 45-49
-
-
Derrida, B.1
Pomeau, Y.2
-
14
-
-
33846864345
-
The role of computation in complex regulatory networks
-
In E. V. Koonin, Y. I. Wolf, & G. P. Karev (Eds.), Austin, TX: Landes Bioscience
-
Fernández, P., & Solé, R. (2004). The role of computation in complex regulatory networks. In E. V. Koonin, Y. I. Wolf, & G. P. Karev (Eds.), Power laws, scale-free networks and genome biology. Austin, TX: Landes Bioscience.
-
(2004)
Power Laws, Scale-Free Networks and Genome Biology
-
-
Fernández, P.1
Solé, R.2
-
15
-
-
2442576146
-
Classification of random Boolean networks
-
In R. K. Standish, M. A. Bedau, & H. A. Abbass (Eds.), Cambridge, MA: MIT Press
-
Gershenson, C. (2002). Classification of random Boolean networks. In R. K. Standish, M. A. Bedau, & H. A. Abbass (Eds.), Artificial Life VIII: Proceedings of the Eighth International Conference on Artificial Life (pp. 1-8). Cambridge, MA: MIT Press.
-
(2002)
Artificial Life VIII: Proceedings of the Eighth International Conference on Artificial Life
, pp. 1-8
-
-
Gershenson, C.1
-
16
-
-
33845617819
-
Introduction to random Boolean networks
-
In M. Bedau, P. Husbands, T. Hutton, S. Kumar, & H. Suzuki (Eds.)
-
Gershenson, C. (2004). Introduction to random Boolean networks. In M. Bedau, P. Husbands, T. Hutton, S. Kumar, & H. Suzuki (Eds.), Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALife IX) (pp. 160-173).
-
(2004)
Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALife IX)
, pp. 160-173
-
-
Gershenson, C.1
-
17
-
-
33344471461
-
Updating schemes in random Boolean networks: Do they really matter?
-
In J. Pollack, M. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Cambridge, MA: MIT Press
-
Gershenson, C. (2004). Updating schemes in random Boolean networks: Do they really matter? In J. Pollack, M. Bedau, P. Husbands, T. Ikegami, & R. A. Watson (Eds.), Artificial Life IX, Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems (pp. 238-243). Cambridge, MA: MIT Press.
-
(2004)
Artificial Life IX, Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems
, pp. 238-243
-
-
Gershenson, C.1
-
19
-
-
84865114650
-
Guiding the self-organization of random Boolean networks
-
in press
-
Gershenson, C. (in press). Guiding the self-organization of random Boolean networks. Theory in Biosciences.
-
Theory in Biosciences
-
-
Gershenson, C.1
-
20
-
-
53149126994
-
The role of redundancy in the robustness of random Boolean networks
-
In L. M. Rocha, L. S. Yaeger, M. A. Bedau, D. Floreano, R. L. Goldstone, & A. Vespignani (Eds.), Cambridge, MA: MIT Press
-
Gershenson, C., Kauffman, S. A., & Shmulevich, I. (2006). The role of redundancy in the robustness of random Boolean networks. In L. M. Rocha, L. S. Yaeger, M. A. Bedau, D. Floreano, R. L. Goldstone, & A. Vespignani (Eds.), Artificial Life X, Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (pp. 35-42). Cambridge, MA: MIT Press.
-
(2006)
Artificial Life X, Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems
, pp. 35-42
-
-
Gershenson, C.1
Kauffman, S.A.2
Shmulevich, I.3
-
21
-
-
85040473565
-
A Model of Transcriptional Regulatory Networks Based on Biases in the Observed Regulation Rules
-
DOI 10.1002/cplx.10022
-
Harris, S. E., Sawhill, B. K., Wuensche, A., & Kauffman, S. (2002). A model of transcriptional regulatory networks based on biases in the observed regulation rules. Complexity, 7, 23-40. (Pubitemid 34961265)
-
(2002)
Complexity
, vol.7
, Issue.4
, pp. 23-40
-
-
Harris, S.E.1
Sawhill, B.K.2
Wuensche, A.3
Kauffman, S.4
-
22
-
-
23844547726
-
Stochastic coupling of two random Boolean networks
-
DOI 10.1016/j.physleta.2005.05.100, PII S037596010500928X
-
Ho, M., Hung, Y., & Jiang, I. (2005). Stochastic coupling of two random Boolean networks. Physics Letters A, 344, 36-42. (Pubitemid 41160434)
-
(2005)
Physics Letters, Section A: General, Atomic and Solid State Physics
, vol.344
, Issue.1
, pp. 36-42
-
-
Ho, M.-C.1
Hung, Y.-C.2
Jiang, I.-M.3
-
23
-
-
0034715919
-
Shape-dependent control of cell growth, differentiation, and apoptosis: Switching between attractors in cell regulatory networks
-
R. Poblanno-Balp and C. Gershenson Modular Random Boolean Networks Artificial Life Volume 17, Number 4 347
-
Huang, S., & Ingber, D. E. (2000). Shape-dependent control of cell growth, differentiation, and apoptosis: Switching between attractors in cell regulatory networks. Experimental Cell Research, 261, 91-103. R. Poblanno-Balp and C. Gershenson Modular Random Boolean Networks Artificial Life Volume 17, Number 4 347
-
(2000)
Experimental Cell Research
, vol.261
, pp. 91-103
-
-
Huang, S.1
Ingber, D.E.2
-
24
-
-
33745203066
-
Chaos synchronization of two stochastically coupled random Boolean networks
-
DOI 10.1016/j.physleta.2006.03.025, PII S0375960106004014
-
Hung, Y.-C., Ho, M.-C., Lih, J.-S., & Jiang, I.-M. (2006). Chaos synchronization of two stochastically coupled random Boolean networks. Physics Letters A, 356, 35-43. (Pubitemid 43913010)
-
(2006)
Physics Letters, Section A: General, Atomic and Solid State Physics
, vol.356
, Issue.1
, pp. 35-43
-
-
Hung, Y.-C.1
Ho, M.-C.2
Lih, J.-S.3
Jiang, I.-M.4
-
25
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
Kauffman, S. A. (1969). Metabolic stability and epigenesis in randomly constructed genetic nets. Journal of Theoretical Biology, 22, 437-467.
-
(1969)
Journal of Theoretical Biology
, vol.22
, pp. 437-467
-
-
Kauffman, S.A.1
-
27
-
-
0003737454
-
-
Oxford, UK: Oxford University Press
-
Kauffman, S. A. (2000). Investigations. Oxford, UK: Oxford University Press.
-
(2000)
Investigations
-
-
Kauffman, S.A.1
-
29
-
-
10344259662
-
Genetic networks with canalyzing Boolean rules are always stable
-
DOI 10.1073/pnas.0407783101
-
Kauffman, S. A., Peterson, C., Samuelsson, B., & Troein, C. (2004). Genetic networks with canalyzing Boolean rules are always stable. Proceedings of the National Academy of Sciences of the United States of America, 101, 17102-17107. (Pubitemid 39627781)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.49
, pp. 17102-17107
-
-
Kauffman, S.1
Peterson, C.2
Samuelsson, B.3
Troein, C.4
-
30
-
-
45149138762
-
Computation at the edge of chaos: Phase transitions and emergent computation
-
Langton, C. (1990). Computation at the edge of chaos: Phase transitions and emergent computation. Physica D, 42, 12-37.
-
(1990)
Physica D
, vol.42
, pp. 12-37
-
-
Langton, C.1
-
31
-
-
84874582088
-
The information dynamics of phase transitions in random Boolean networks
-
In S. Bullock, J. Noble, R. Watson, & M. A. Bedau (Eds.), Cambridge, MA: MIT Press
-
Lizier, J., Prokopenko, M., & Zomaya, A. (2008). The information dynamics of phase transitions in random Boolean networks. In S. Bullock, J. Noble, R. Watson, & M. A. Bedau (Eds.), Artificial Life XI-Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems (pp. 374-381). Cambridge, MA: MIT Press.
-
(2008)
Artificial Life XI-Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems
, pp. 374-381
-
-
Lizier, J.1
Prokopenko, M.2
Zomaya, A.3
-
32
-
-
0002891702
-
Phase transitions in random networks: Simple analytic determination of critical points
-
Luque, B., & Solé, R. V. (1997). Phase transitions in random networks: Simple analytic determination of critical points. Physical Review E, 55, 257-260. (Pubitemid 127607434)
-
(1997)
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics
, vol.55
, Issue.1 SUPPL. A
, pp. 257-260
-
-
Luque, B.1
Sole, R.V.2
-
33
-
-
0034273128
-
Lyapunov exponents in random Boolean networks
-
Luque, B., & Solé, R. V. (2000). Lyapunov exponents in random Boolean networks. Physica A, 284, 33-45.
-
(2000)
Physica A
, vol.284
, pp. 33-45
-
-
Luque, B.1
Solé, R.V.2
-
34
-
-
33746778773
-
Effects of topology on network evolution
-
DOI 10.1038/nphys359, PII NPHYS359
-
Oikonomou, P., & Cluzel, P. (2006). Effects of topology on network evolution. Nature Physics, 2, 532-536. (Pubitemid 44167277)
-
(2006)
Nature Physics
, vol.2
, Issue.8
, pp. 532-536
-
-
Oikonomou, P.1
Cluzel, P.2
-
36
-
-
80053237200
-
Modular random Boolean networks
-
In H. Fellermann, M. Dörr, M. M. Hanczyc, L. L. Laursen, S. Maurer, D. Merkle, P.-A. Monnard, K. Støy, & S. Rasmussen (Eds.), Cambridge, MA: MIT Press
-
Poblanno-Balp, R., & Gershenson, C. (2010). Modular random Boolean networks. In H. Fellermann, M. Dörr, M. M. Hanczyc, L. L. Laursen, S. Maurer, D. Merkle, P.-A. Monnard, K. Støy, & S. Rasmussen (Eds.), Artificial Life XII: Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems (pp. 303-304). Cambridge, MA: MIT Press.
-
(2010)
Artificial Life XII: Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems
, pp. 303-304
-
-
Poblanno-Balp, R.1
Gershenson, C.2
-
38
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
DOI 10.1038/ng1165
-
Segal, E., Shapira, M., Regev, A., Pe'er, D., Botstein, D., Koller, D., & Friedman, N. (2003). Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data. Nature Genetics, 34, 166-176. (Pubitemid 36666927)
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
39
-
-
53049084454
-
The diffusion of perturbations in a model of coupled random boolean networks
-
In H. Umeo, S. Morishita, K. Nishinari, T. Komatsuzaki, & S. Bandini (Eds.), Berlin: Springer
-
Serra, R., Villani, M., Damiani, C., Graudenzi, A., & Colacci, A. (2008). The diffusion of perturbations in a model of coupled random boolean networks. In H. Umeo, S. Morishita, K. Nishinari, T. Komatsuzaki, & S. Bandini (Eds.), Cellular automata (pp. 315-322). Berlin: Springer.
-
(2008)
Cellular Automata
, pp. 315-322
-
-
Serra, R.1
Villani, M.2
Damiani, C.3
Graudenzi, A.4
Colacci, A.5
-
41
-
-
4344706221
-
Activities and sensitivities in Boolean network models
-
Shmulevich, I., & Kauffman, S. A. (2004). Activities and sensitivities in Boolean network models. Physical Review Letters, 93, 048701.
-
(2004)
Physical Review Letters
, vol.93
, pp. 048701
-
-
Shmulevich, I.1
Kauffman, S.A.2
-
43
-
-
21344490636
-
Evolution by damage spreading in Kauffmanmodel
-
Stauffer,D. (1994). Evolution by damage spreading inKauffmanmodel. Journal of Statistical Physics, 74, 1293-1299.
-
(1994)
Journal of Statistical Physics
, vol.74
, pp. 1293-1299
-
-
Stauffer, D.1
-
44
-
-
0018080896
-
Logical analysis of systems comprising feedback loops
-
DOI 10.1016/0022-5193(78)90127-3
-
Thomas, R. (1978). Logical analysis of systems comprising feedback loops. Journal of Theoretical Biology, 73, 631-656. (Pubitemid 9012584)
-
(1978)
Journal of Theoretical Biology
, vol.73
, Issue.4
, pp. 631-656
-
-
Thomas, R.1
-
45
-
-
33750248629
-
Coupled random boolean network forming an artificial tissue
-
Cellular Automata - 7th International Conference on Cellular Automata for Research and Industry, ACRI 2006, Proceedings
-
Villani, M., Serra, R., Kauffman, S. A., & Ingrami, P. (2006). Coupled random Boolean network forming an artificial tissue. In Cellular Automata (pp. 548-556). Berlin: Springer. (Pubitemid 44608819)
-
(2006)
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
, vol.4173
, pp. 548-556
-
-
Villani, M.1
Serra, R.2
Ingrami, P.3
Kauffman, S.A.4
-
46
-
-
14344263352
-
Distributed robustness versus redundancy as causes of mutational robustness
-
DOI 10.1002/bies.20170
-
Wagner, A. (2005). Distributed robustness versus redundancy as causes of mutational robustness. BioEssays, 27, 176-188. (Pubitemid 40292389)
-
(2005)
BioEssays
, vol.27
, Issue.2
, pp. 176-188
-
-
Wagner, A.1
-
48
-
-
36248936497
-
The road to modularity
-
DOI 10.1038/nrg2267, PII NRG2267
-
Wagner, G. P., Pavlicev, M., & Cheverud, J. M. (2007). The road to modularity. Nature Reviews. Genetics, 8, 921-931. R. Poblanno-Balp and C. Gershenson Modular Random Boolean Networks 348 Artificial Life Volume 17, Number 4 (Pubitemid 350129175)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.12
, pp. 921-931
-
-
Wagner, G.P.1
Pavlicev, M.2
Cheverud, J.M.3
-
49
-
-
84874716128
-
A Fisher information study of phase transitions in random Boolean networks
-
In H. Fellermann, M. Dörr, M. M. Hanczyc, L. L. Laursen, S. Maurer, D. Merkle, P.-A. Monnard, K. Støy, & S. Rasmussen (Eds.), Cambridge, MA: MIT Press
-
Wang, X. R., Lizier, J., & Prokopenko, M. (2010). A Fisher information study of phase transitions in random Boolean networks. In H. Fellermann, M. Dörr, M. M. Hanczyc, L. L. Laursen, S. Maurer, D. Merkle, P.-A. Monnard, K. Støy, & S. Rasmussen (Eds.), Artificial Life XII: Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems (pp. 305-312). Cambridge, MA: MIT Press.
-
(2010)
Artificial Life XII: Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems
, pp. 305-312
-
-
Wang, X.R.1
Lizier, J.2
Prokopenko, M.3
-
51
-
-
77649342383
-
Degeneracy: A design principle for robustness and evolvability
-
Whitacre, J. M., & Bender, A. (2010). Degeneracy: A design principle for robustness and evolvability. Journal of Theoretical Biology, 263, 143-153.
-
(2010)
Journal of Theoretical Biology
, vol.263
, pp. 143-153
-
-
Whitacre, J.M.1
Bender, A.2
-
53
-
-
3242680975
-
Discrete dynamical networks and their attractor basins
-
In R. Standish, B. Henry, S. Watt, R. Marks, R. Stocker, rfvn1 D. Green, S. Keen, & T. Bossomaier (Eds.). Sydney, Australia: University of New South Wales
-
Wuensche, A. (1998). Discrete dynamical networks and their attractor basins. In R. Standish, B. Henry, S. Watt, R. Marks, R. Stocker, D. Green, S. Keen, & T. Bossomaier (Eds.), Complex systems '98 (pp. 3-21). Sydney, Australia: University of New South Wales.
-
(1998)
Complex systems '98
, pp. 3-21
-
-
Wuensche, A.1
|