Centennial olive trees as a reservoir of genetic diversity

Annals of Botany

Volumn 108, Issue 5, 2011, Pages 797-807

  Dez, Concepcin M ^a,d   Trujillo, Isabel ^a   Barrio, Eladio ^b   Belaj, Angjelina ^c   Barranco, Diego ^a   Rallo, Luis ^a  

^a Campus Universitario de Rabanales   (Spain)

^b UNIVERSITY OF VALENCIA   (Spain)

^c IFAPA CENTRO ALAMEDA DEL OBISPO   (Spain)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

domestication; in situ conservation; intracultivar variability; microsatellite markers; Olea europaea; traditional cultivars; wild olives

Indexed keywords

MICROSATELLITE DNA;

CLONE; CULTIVAR; DOMESTICATION; GENETIC MARKER; GENETIC VARIATION; GERMPLASM; GRAFTING; PHYLOGENETICS; SAMPLING; SHRUB; WILD POPULATION;

ARTICLE; GENETIC VARIABILITY; GENETICS; OLIVE TREE; PHYLOGENY; PLANT GENE; PLANT LEAF; PLANT ROOT; SPAIN;

GENES, PLANT; GENETIC VARIATION; MICROSATELLITE REPEATS; OLEA; PHYLOGENY; PLANT LEAVES; PLANT ROOTS; SPAIN;

SPAIN;

OLEA EUROPAEA; OLEA EUROPAEA VAR. SYLVESTRIS; OLEACEAE;

EID: 80053246729     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcr194     Document Type: Article

References (75)

1. Angiolillo A, Mencuccini M, Baldoni L. 1999. Olive genetic diversity assessed using amplified fragment length polymorphisms. Theoretical and Applied Genetics 98: 411-421. (Pubitemid 29172802)
2. Baldoni L, Cultrera NG, Mariotti R, et al. 2009. A consensus list of microsatellite markers for olive genotyping. Molecular Breeding 24: 213-231.
3. Baldoni L, Tosti N, Ricciolini C, et al. 2006. Genetic structure of wild and cultivated olives in the central Mediterranean basin. Annals of Botany 98: 935-942. (Pubitemid 44656800)
4. Banilas G, Minas J, Gregoriou C, Demoliou C, Kourti A, Hatzopoulos P. 2003. Genetic diversity among accessions of an ancient olive variety of Cyprus. Genome 46: 370-376. (Pubitemid 36953236)
5. Barazani A, Dag A, Kerem Z, Lavee S, Kadereit J. 2008. Local old olive landrace varieties in Israel: valuable plant genetic resources in olive cultivation. Israel Journal of Plant Sciences 56: 265-271.
6. Barranco D. 2008. Variedades y Patrones. In: Barranco D, Fernandez-Escobar R, Rallo L, eds. El cultivo del olivo, 6th edn). Madrid: Mundi-Prensa y Junta de Andalucia, 37-62.
7. Barranco D, Rallo L. 1984. Las variedades de olivo cultivadas en Andalucia. Madrid, Spain: Ministerio de Agricultura, Junta de Andalucia.
8. Barranco D, Rallo L. 2000. Olive cultivars in Spain. HortTechnology 10: 107-110. (Pubitemid 30031343)
9. Barranco D, Trujillo I, Rallo L. 2005. Elaiografa Hispanica. In: Rallo L, Caballero JM, Del Rio C, Martin A, Tous J, Trujillo I, eds. Variedades de olivo en Espana. Madrid: Junta de Andaluca, MAPA y Ediciones Mundi-Prensa, 45-231.
10. Belaj A, Rallo L, Trujillo I, Baldoni L. 2004. Using RAPD and AFLP markers to distinguish individuals obtained by clonal selection of 'Arbequina' and 'Manzanilla de Sevilla' olive. Hortscience 39: 1566-1570. (Pubitemid 39547654)
11. Belaj A, Munoz-Dez C, Baldoni L, Porceddu A, Barranco D, Satovic Z. 2007. Genetic diversity and population structure of wild olives from the north-western Mediterranean assessed by SSR markers. Annals of Botany 100: 449-458. (Pubitemid 47327691)
12. Belaj A, Munoz-Dez C, Baldoni L, Satovic Z, Barranco D. 2010. Genetic diversity and relationships of wild and cultivated olives at regional level in Spain. Scientia Horticulturae 124: 323-330.
13. Besnard G, Baradat P, Berville A. 2001. Genetic relationships in the olive (Olea europaea L.) reflect multilocal selection of cultivars. Theoretical and Applied Genetics 102: 251-258. (Pubitemid 32205443)
14. Botstein D, White RL, Skolnick M, Davis RW. 1980. Construction of a genetic-linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics 32: 314-331. (Pubitemid 11105557)
15. Bracci T, Sebastiani L, Busconi M, Fogher C, Belaj A, Trujillo I. 2009. SSR markers reveal the uniqueness of olive cultivars from the Italian region of Liguria. Scientia Horticulturae 122: 209-215.
16. Breton C, Tersac M, Berville A. 2006. Genetic diversity and gene flow between the wild olive (oleaster, Olea europaea L.) and the olive: several Plio-Pleistocene refuge zones in the Mediterranean basin suggested by simple sequence repeats analysis. Journal of Biogeography 33: 1916-1928. (Pubitemid 44536359)
17. Bronzini de Caraffa V, Giannettini J, Gambotti C, Maury J. 2002a. Genetic relationships between cultivated and wild olives of Corsica and Sardinia using RAPD markers. Euphytica 123: 263-271. (Pubitemid 34432190)
18. Bronzini de Caraffa V, Maury J, Gambotti C, Breton C, Berville A, Giannettini J. 2002b. Mitochondrial DNA variation and RAPD mark oleasters, olive and feral olive from Western and Eastern Mediterranean. Theoretical and Applied Genetics 104: 1209-1216. (Pubitemid 36080378)
19. Burley AL, Phillips S, Ooi MKJ. 2007. Can age be predicted from diameter for the obligate seeder Allocasuarina littoralis (Casuarinaceae) by using dendrochronological techniques? Australian Journal of Botany 55: 433-438. (Pubitemid 46975693)
20. Charafi J, El Meziane A, Moukhli A, Boulouha B, El Modafar C, Khadari B. 2008. Menara gardens: a Moroccan olive germplasm collection identified by a SSR locus-based genetic study. Genetic Resources and Crop Evolution 55: 893-900.
21. Cipriani G, Marrazzo MT, Marconi R, Cimato A, Testolin R. 2002. Microsatellite markers isolated in olive (Olea europaea L.) are suitable for individual fingerprinting and reveal polymorphism within ancient cultivars. Theoretical and Applied Genetics 104: 223-228. (Pubitemid 36065047)
22. Claros MG, Crespillo R, Aguilar ML, Canovas FM. 2000. DNA fingerprinting and classification of geographically related genotypes of olive-tree (Olea europaea L.). Euphytica 116: 131-142.
23. Corander J, Marttinen P. 2006. Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology 15: 2833-2843. (Pubitemid 44215457)
24. Corander J, Waldmann P, Sillanpaa MJ. 2003. Bayesian analysis of genetic differentiation between populations. Genetics 163: 367-374. (Pubitemid 36222679)
25. Corander J, Marttinen P, Siren J, Tang J. 2008. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9: 539. doi:10.1186/1471-2105-9-539.
26. Crespan M. 2004. Evidence on the evolution of polymorphism of microsatellite markers in varieties of Vitis vinifera L. Theoretical and Applied Genetics 108: 231-237. (Pubitemid 38162204)
27. Dice LR. 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302.
28. Doebley JF, Gaut BS, Smith BD. 2006. The molecular genetics of crop domestication. Cell 127: 1309-1321. (Pubitemid 44960415)
29. Elbaum R, Melamed-Bessudo C, Boaretto E, Galili E, Lev-Yadun S, Levy AA, Weiner S. 2006. Ancient olive DNA in pits: preservation, amplification and sequence analysis. Journal of Archaeological Science 33: 77-88. (Pubitemid 43124647)
30. Erre P, Chessa I, Munoz-Diez C, Belaj A, Rallo L, Trujillo I. 2010. Genetic diversity and relationships between wild and cultivated olives (Olea europaea L.) in Sardinia as assessed by SSR markers. Genetic Resources and Crop Evolution 57: 41-54.
31. Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 2611-2620. (Pubitemid 40886055)
32. Franks T, Botta R, Thomas MR. 2002. Chimerism in grapevines: implications for cultivar identity, ancestry and genetic improvement. Theoretical and Applied Genetics 104: 192-199. (Pubitemid 36065044)
33. Garcia-Diaz A, Oya R, Sanchez A, Luque F. 2003. Effect of prolonged vegetative reproduction of olive tree cultivars (Olea europaea L.) in mitochondrial homoplasmy and heteroplasmy. Genome 46: 377-381. (Pubitemid 36953237)
34. Gill DE, Chao L, Perkins SL, Wolf JB. 1995. Genetic mosaicism in plants and clonal animals. Annual Review of Ecology and Systematics 26: 423-444. (Pubitemid 3019633)
35. Guzman-Alvarez JR. 2004. El palimpsesto cultivado: historia de los paisajes del olivar andaluz. Sevilla: Consejeria de Agricultura y Pesca.
36. Hagidimitriou M, Katsiotis A, Menexes G, Pontikis C, Loukas M. 2005. Genetic diversity of major Greek olive cultivars using molecular (AFLPs and RAPDs) markers and morphological traits. Journal of the American Society for Horticultural Science 130: 211-217. (Pubitemid 40351032)
37. Hansson MC, Foley BP. 2008. Ancient DNA fragments inside Classical Greek amphoras reveal cargo of 2400-year-old shipwreck. Journal of Archaeological Science 35: 1169-1176.
38. Harris SA, Robinson JP, Juniper BE. 2002. Genetic clues to the origin of the apple. Trends in Genetics 18: 426-430. (Pubitemid 34874541)
39. International Olive Council. 2010. Statistical series. http://www. internationaloliveoil.org/estaticos/view/131-world-olive-oil-figures (accessed 6 February 2011).
40. International Union for the Protection of New Varieties of Plants. 1991.
41. International convention for the protection of new varieties of plants of 2 December 1961, as revised at Geneva on 10 November 1972, on 23 October 1978 and on 19 March 1991. http://www.upov.int/en/publications (accessed 6 February 2011).
42. Jakobsson M, Rosenberg NA. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806. (Pubitemid 47250313)
43. Liu KJ, Muse SV. 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129. (Pubitemid 40668066)
44. Lumaret R, Ouazzani N, Michaud H, Vivier G, Deguilloux MF, Di Giusto F. 2004. Allozyme variation of oleaster populations (wild olive tree) (Olea europaea L.) in the Mediterranean Basin. Heredity 92: 343-351. (Pubitemid 38484999)
45. McKey D, Elias M, Pujol B, Duputie A. 2010. The evolutionary ecology of clonally propagated domesticated plants. New Phytologist 186: 318-332.
46. Mazzalupo I, Chiappetta A, Benicasa C, Perri E. 2010. Intra-cultivar variability of three major olive cultivars grown in different areas of centralsouthern Italy and studies using microsatellite markers. Scientia Horticulturae 126: 324-329.
47. Montemurro C, Simeone R, Pasqualone A, Ferrara E, Blanco A. 2005. Genetic relationships and cultivar identification among 112 olive accessions using AFLP and SSR markers. Journal of Horticultural Science & Biotechnology 80: 105-110.
48. Munoz-Dez C. 2008. Prospeccion, diversidad genetica y conservacion de ejemplares monumentales y poblaciones silvestres de olivo (Olea europaea L.). PhD Thesis, University of Cordoba, Spain.
49. Munoz-Dez C, Belaj A, Barranco D, Rallo L. 2004. Olivos monumentales de Espana. Madrid: Mundiprensa-UnoEdiciones.
50. Nikoloudakis N, Banilas G, Gazis F, Hatzopoulos P, Metzidakis J. 2003. Discrimination and genetic diversity among cultivated olives of Greece using RAPD markers. Journal of the American Society for Horticultural Science 128: 741-746. (Pubitemid 36941410)
51. Noormohammadi Z, Hosseini-Mazinani M, Trujillo I, Ratio L, Belaj A, Sadeghizadeh M. 2007. Identification and classification of main Iranian olive cultivars using microsatellite markers. Hortscience 42: 1545-1550. (Pubitemid 350177714)
52. van Oosterhout C, Weetman D, Hutchinson WF. 2006. Estimation and adjustment of microsatellite null alleles in nonequilibrium populations. Molecular Ecology Notes 6: 255-256. (Pubitemid 43373817)
53. Paetkau D, Strobeck C. 1994. Microsatellite analysis of genetic-variation in black bear populations. Molecular Ecology 3: 489-495. (Pubitemid 2152897)
54. Petit RJ, Hampe A. 2006. Some evolutionary consequences of being a tree. Annual Review of Ecology, Evolution and Systematics 37: 187-214. (Pubitemid 44907617)
55. Pineda-Krch M, LehtilaK. 2004. Costs and benefits of genetic heterogeneity within organisms. Journal of Evolutionary Biology 17: 1167-1177. (Pubitemid 39474422)
56. Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
57. Rallo L. 2005. Variedades de olivo en Espana: una aproximacion cronologica. In: Rallo L, Caballero JM, Del Rio C, Martin A, Tous J, Trujillo I, eds. Variedades de olivo en Espana. Madrid: Junta de Andaluca, MAPA y Ediciones Mundi-Prensa, 17-44.
58. Rallo L, Munoz-Dez C. 2010. Olive growing in a time of change. In: Verheye H, ed. Soils, plant growth and crop production. In: Encyclopedia of life support systems (EOLSS), developed under the auspices of the UNESCO. Oxford: Eolss Publishers. http://www.eolss.net (accessed 8 February 2011).
59. Red de Informacion Agroclimatica de Andalucia. 2010. Series de datos climaticos. Sevilla: Consejeria de Agricultura y Pesca de Andalucia web. http://www.juntadeandalucia.es/agriculturaypesca/ifapa/ria/servlet/ FrontController (accessed 6 February 2011).
60. Regner F, Stadlbauer A, Eisenheld C, Kaserer H. 2000a. Genetic relationships among Pinots and related cultivars. American Journal of Enology and Viticulture 51: 7-14. (Pubitemid 30610190)
61. Regner F, Wiedeck E, Stadlbauer A. 2000b. Differentiation and identification of White Riesling clones by genetic markers. Vitis 39: 103-107.
62. Remesal-Rodriguez J. 2008. El aceite betico en el imperio romano. In: Tierras del olivo. Granada: El Legado Andalusi, 66-81.
63. Rodriguez-Ariza MO, Moya EM. 2005. On the origin and domestication of Olea europaea L. (olive) in Andalusia, Spain, based on the biogeographical distribution of its finds. Vegetation History and Archaeobotany 14: 551-561. (Pubitemid 43336081)
64. Rohlf FJ. 1998. NTSYS-pc. Numerical taxonomy and multivariate analysis system, version 2.00. New York, NY: Exeter Software, Setauket.
65. de la Rosa R, James C, Tobutt KR. 2002. Isolation and characterization of polymorphic microsatellites in olive Olea europaea L. and their transferability to other genera in the Oleaceae. Molecular Ecology Notes 2: 265-267.
66. Rosenberg NA. 2004. DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes 4: 137-138. (Pubitemid 38261335)
67. Rozas V. 2003. Tree age estimates in Fagus sylvatica and Quercus robur: testing previous and improved methods. Plant Ecology 167: 193-212. (Pubitemid 36774716)
68. Rozas V. 2004. A dendroecological reconstruction of age structure and past management in an old-growth pollarded parkland in northern Spain. Forest Ecology and Management 195: 205-219. (Pubitemid 38722504)
69. Rubio de Casas R, Besnard G, Schoenswetter P, Balaguer L, Vargas P. 2006. Extensive gene flow blurs phylogeographic but not phylogenetic signal in Olea europaea L. Theoretical and Applied Genetics 113: 575-583. (Pubitemid 44127001)
70. Terral JF. 2000. Exploitation and management of the olive tree during prehistoric times in Mediterranean France and Spain. Journal of Archaeological Science 27: 127-133.
71. Terral JF, Mengual X. 1999. Reconstruction of Holocene climate in southern France and eastern Spain using quantitative anatomy of olive wood and archaeological charcoal. Palaeogeography, Palaeoclimatology, Palaeoecology 153: 71-92. (Pubitemid 29447123)
72. Trapero A, Lopez Doncel LM. 2005. Resistencia y susceptibilidad al repilo. In: Rallo L, Caballero JM, Del Rio C, Martin A, Tous J, Trujillo I, eds. Variedades de olivo en Espana. Madrid: Junta de Andaluca, MAPA y Ediciones Mundi-Prensa, 321-328.
73. Trillo-San Jose C. 2008. El olivo en Al-Andalus: tradicion latina e islamica. In: Tierras del olivo. Granada: El Legado Andalusi, 104-115.
74. Valiere N. 2002. GIMLET: a computer program for analysing genetic individual identification data. Molecular Ecology Notes 2: 377-379.
75. Zohary D, Spiegel-Roy P. 1975. Beginnings of fruit growing in the Old World. Science 187: 319-327.