Evaluating dependency representation for event extraction

Coling 2010 - 23rd International Conference on Computational Linguistics, Proceedings of the Conference

Volumn 2, Issue , 2010, Pages 779-787

  Miwa, Makoto ^a   Pyysalo, Sampo ^a   Hara, Tadayoshi ^a   Tsujii, Jun'ichi ^a,b,c  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

^c National Center for Text Mining   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-MOLECULAR; DOMAIN SPECIFIC; EVALUATION RESULTS; EVENT EXTRACTION; INFORMATION EXTRACTION; SENTENCE STRUCTURES; STATE-OF-THE-ART PERFORMANCE;

COMPUTATIONAL LINGUISTICS;

DATA MINING;

EID: 80053226733     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (20)

1. Bikel, Daniel M. 2004. A distributional analysis of a lexicalized statistical parsing model. In In EMNLP, pages 182-189.
2. Björne, Jari, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, and Tapio Salakoski. 2009. Extracting complex biological events with rich graph-based feature sets. In Proceedings of the BioNLP'09 Shared Task on Event Extraction, pages 10-18.
3. Clegg, Andrew B. and Adrian J. Shepherd. 2007. Benchmarking natural-language parsers for biological applications using dependency graphs. BMC Bioinformatics, 8.
4. de Marneffe, Marie-Catherine and Christopher D. Manning. 2008. Stanford typed dependencies manual. Technical report, September.
5. de Marneffe, Marie-Catherine, Bill MacCartney, and Christopher D. Manning. 2006. Generating typed dependency parses from phrase structure parses. In Proceedings of the IEEE/ACL 2006 Workshop on Spoken Language Technology.
6. Johansson, Richard and Pierre Nugues. 2007. Extended constituent-to- dependency conversion for English. In Proceedings of NODALIDA 2007, Tartu, Estonia, May 25-26.
7. Kim, Jin-Dong, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, and Jun'ichi Tsujii. 2009. Overview of bionlp'09 shared task on event extraction. In BioNLP'09: Proceedings of the Workshop on BioNLP, pages 1-9.
8. Klein, Dan and Christopher D. Manning. 2003. Accurate unlexicalized parsing. In ACL'03: Proceedings of the 41st Annual Meeting on Association for Computational Linguistics, pages 423-430, Morristown, NJ, USA. Association for Computational Linguistics.
9. McClosky, David. 2009. Any Domain Parsing: Automatic Domain Adaptation for Natural Language Parsing. Ph.D. thesis, Department of Computer Science, Brown University.
10. Miwa, Makoto, Sampo Pyysalo, Tadayoshi Hara, and Jun'ichi Tsujii. 2010a. A comparative study of syntactic parsers for event extraction. In BioNLP2010: Proceedings of the Workshop on BioNLP, Uppsala, Sweden, July.
11. Miwa, Makoto, Rune Sætre, Jin-Dong Kim, and Jun'ichi Tsujii. 2010b. Event extraction with complex event classification using rich features. Journal of Bioinformatics and Computational Biology (JBCB), 8(1):131-146, February.
12. Miyao, Yusuke, Kenji Sagae, Rune Sætre, Takuya Matsuzaki, and Junichi Tsujii. 2009. Evaluating contributions of natural language parsers to protein-protein interaction extraction. Bioinformatics, 25(3):394-400.
13. Önder Eker. 2009. Parser evaluation using textual entailments. Master's thesis, Boǧaziçi Üniversitesi, August.
14. Pyysalo, Sampo, Filip Ginter, Veronika Laippala, Katri Haverinen, Juho Heimonen, and Tapio Salakoski. 2007. On the unification of syntactic annotations under the stanford dependency scheme: A case study on bioinfer and genia. In Biological, translational, and clinical language processing, pages 25-32, Prague, Czech Republic, June. Association for Computational Linguistics.
15. Riedel, Sebastian, Hong-Woo Chun, Toshihisa Takagi, and Jun'ichi Tsujii. 2009. A markov logic approach to bio-molecular event extraction. In BioNLP'09: Proceedings of the Workshop on BioNLP, pages 41-49, Morristown, NJ, USA. Association for Computational Linguistics.
16. Rimell, Laura and Stephen Clark. 2009. Porting a lexicalized-grammar parser to the biomedical domain. J. of Biomedical Informatics, 42(5):852-865.
17. Rimell, Laura, Stephen Clark, and Mark Steedman. 2009. Unbounded dependency recovery for parser evaluation. In Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing, pages 813-821, Singapore, August. Association for Computational Linguistics.
18. Sagae, Kenji and Jun'ichi Tsujii. 2007. Dependency parsing and domain adaptation with LR models and parser ensembles. In EMNLP-CoNLL 2007.
19. Tateisi, Yuka, Akane Yakushiji, Tomoko Ohta, and Junfichi Tsujii. 2005. Syntax annotation for the genia corpus. In Proceedings of the IJCNLP 2005, Companion volume, pages 222-227, Jeju Island, Korea, October.
20. Tsuruoka, Yoshimasa, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John McNaught, Sophia Ananiadou, and Jun'ichi Tsujii. 2005. Developing a robust part-of-speech tagger for biomedical text. In Bozanis, Panayiotis and Elias N. Houstis, editors, Panhellenic Conference on Informatics, volume 3746 of Lecture Notes in Computer Science, pages 382-392. Springer.