Erratum: Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP (Nucleic Acids Research (2011) 39:17 (7576-7585) DOI: 10.1093/nar/gkr461);Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP

Nucleic Acids Research

Volumn 39, Issue 17, 2011, Pages 7576-7585

  Russo, Annapina ^a,b   Catillo, Morena ^a   Esposito, Davide ^a   Briata, Paola ^c   Pietropaolo, Concetta ^a   Russo, Giulia ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b CEINGE BIOTECNOLOGIE AVANZATE   (Italy)

^c UNIVERSITY OF GENOA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H1; K HOMOLOGY SPLICING REGULATOR PROTEIN; NUCLEOPHOSMIN; REGULATOR PROTEIN; RNA; UNCLASSIFIED DRUG;

ALTERNATIVE RNA SPLICING; ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; GENE; GENE CONTROL; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE IDENTIFICATION; HUMAN; HUMAN CELL; INTRON; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN INTERACTION; REGULATORY MECHANISM; RPL3 GENE; TRANSCRIPTION REGULATION;

EUKARYOTA;

EID: 80053211077     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx1099     Document Type: Erratum

References (32)

1. Grabowski, P.J. and Black, D.L. (2001) Alternative RNA splicing in the nervous system. Prog. Neurobiol., 65, 289-308. (Pubitemid 32709987)
2. Keren, H., Lev-Maor, G. and Ast, G. (2010) Alternative splicing and evolution: diversification, exon definition and function. Nat. Rev. Genet., 11, 345-355.
3. Caceres, J.F. and Kornblihtt, A.R. (2002) Alternative splicing: multiple control mechanisms and involvement in human disease. Trends Genet., 18, 186-193. (Pubitemid 34273739)
4. Long, J.C. and Caceres, J.F. (2009) The SR protein family of splicing factors: master regulators of gene expression. Biochem. J., 417, 15-27.
5. Martinez-Contreras, R., Cloutier, P., Shkreta, L., Fisette, J.F., Revil, T. and Chabot, B. (2007) hnRNP proteins and splicing control. Adv. Exp. Med. Biol., 623, 123-147.
6. Expert-Bezancon, A., Sureau, A., Durosay, P., Salesse, R., Groeneveld, H., Lecaer, J.P. and Marie, J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J. Biol. Chem., 279, 38249-38259. (Pubitemid 39295972)
7. McGlincy, N.J. and Smith, C.W. (2008) Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense? Trends Biochem. Sci., 33, 385-393.
8. Chang, Y.F., Imam, J.S. and Wilkinson, M.F. (2007) The nonsense-mediated decay RNA surveillance pathway. Annu. Rev. Biochem., 76, 51-74.
9. Nicholson, P., Yepiskoposyan, H., Metze, S., Zamudio Orozco, R., Kleinschmidt, N. and Muhlemann, O. (2010) Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell. Mol. Life Sci., 67, 677-700.
10. Lewis, B.P., Green, R.E. and Brenner, S.E. (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl Acad. Sci. USA, 100, 189-192. (Pubitemid 36078050)
11. Licatalosi, D.D. and Darnell, R.B. (2010) RNA processing and its regulation: global insights into biological networks. Nat. Rev. Genet., 11, 75-87.
12. Wood, M.J., Gait, M.J. and Yin, H. (2010) RNA-targeted splice-correction therapy for neuromuscular disease. Brain, 133, 957-972.
13. Mitrovich, Q.M. and Anderson, P. (2000) Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans. Genes Dev., 14, 2173-2184.
14. Cuccurese, M., Russo, G., Russo, A. and Pietropaolo, C. (2005) Alternative splicing and nonsense-mediated mRNA decay regulate mammalian ribosomal gene expression. Nucleic Acids Res., 33, 5965-5977. (Pubitemid 41742616)
15. Russo, A., Siciliano, G., Catillo, M., Giangrande, C., Amoresano, A., Pucci, P., Pietropaolo, C. and Russo, G. (2010) hnRNP H1 and intronic G runs in the splicing control of the human rpL3 gene. Biochim. Biophys. Acta, 1799, 419-428.
16. Gherzi, R., Lee, K.Y., Briata, P., Wegmuller, D., Moroni, C., Karin, M. and Chen, C.Y. (2004) A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery. Mol. Cell, 14, 571-583. (Pubitemid 38739081)
17. Russo, G., Cuccurese, M., Monti, G., Russo, A., Amoresano, A., Pucci, P. and Pietropaolo, C. (2005) Ribosomal protein L7a binds RNA through two distinct RNA-binding domains. Biochem. J., 385, 289-299.
18. Wang, Z. and Burge, C.B. (2008) Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. RNA, 14, 802-813. (Pubitemid 351574901)
19. Pan, Q., Shai, O., Lee, L.J., Frey, B.J. and Blencowe, B.J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet., 40, 1413-1415.
20. Russo, A., Russo, G., Cuccurese, M., Garbi, C. and Pietropaolo, C. (2006) The 30-untranslated region directs ribosomal protein-encoding mRNAs to specific cytoplasmic regions. Biochim. Biophys. Acta, 1763, 833-843. (Pubitemid 44209391)
21. Russo, A., Cirulli, C., Amoresano, A., Pucci, P., Pietropaolo, C. and Russo, G. (2008) cis-acting sequences and trans-acting factors in the localization of mRNA for mitochondrial ribosomal proteins. Biochim. Biophys. Acta, 1779, 820-829.
22. Wang, Z., Cotney, J. and Shadel, G.S. (2007) Human mitochondrial ribosomal protein MRPL12 interacts directly with mitochondrial RNA polymerase to modulate mitochondrial gene expression. J. Biol. Chem., 282, 12610-12618. (Pubitemid 47103114)
23. Chaudhuri, S., Vyas, K., Kapasi, P., Komar, A.A., Dinman, J.D., Barik, S. and Mazumder, B. (2007) Human ribosomal protein L13a is dispensable for canonical ribosome function, but indispensable for efficient rRNA methylation. RNA, 13, 2224-2237. (Pubitemid 350127563)
24. Colombo, E., Alcalay, M. and Pelicci, P.G. (2011) Nucleophosmin and its complex network: a possible therapeutic target in hematological diseases. Oncogene, doi: 10.1038/onc.2010.646 Jan 31.
25. Lindstrom, M.S. and Zhang, Y. (2008) Ribosomal protein S9 is a novel B23/NPM-binding protein required for normal cell proliferation. J. Biol. Chem., 283, 15568-15576.
26. Wanzel, M., Russ, A.C., Kleine-Kohlbrecher, D., Colombo, E., Pelicci, P.G. and Eilers, M. (2008) A ribosomal protein L23-nucleophosmin circuit coordinates Miz1 function with cell growth. Nat. Cell Biol., 10, 1051-1061.
27. Tarapore, P., Shinmura, K., Suzuki, H., Tokuyama, Y., Kim, S.H., Mayeda, A. and Fukasawa, K. (2006) Thr199 phosphorylation targets nucleophosmin to nuclear speckles and represses pre-mRNA processing. FEBS Lett., 580, 399-409. (Pubitemid 43089663)
28. Briata, P., Chen, C.Y., Giovarelli, M., Pasero, M., Trabucchi, M., Ramos, A. and Gherzi, R. (2011) KSRP, many functions for a single protein. Front. Biosci., 16, 1787-1796.
29. Trabucchi, M., Briata, P., Garcia-Mayoral, M., Haase, A.D., Filipowicz, W., Ramos, A., Gherzi, R. and Rosenfeld, M.G. (2009) The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature, 459, 1010-1014.
30. Holzmann, K., Korosec, T., Gerner, C., Grimm, R. and Sauermann, G. (1997) Identification of human common nuclear-matrix proteins as heterogeneous nuclear ribonucleoproteins H and H0 by sequencing and mass spectrometry. Eur. J. Biochem., 244, 479-486. (Pubitemid 27110751)
31. Markovtsov, V., Nikolic, J.M., Goldman, J.A., Turck, C.W., Chou, M.Y. and Black, D.L. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol. Cell. Biol., 20, 7463-7479.
32. Garcia-Mayoral, M.F., Hollingworth, D., Masino, L., Diaz-Moreno, I., Kelly, G., Gherzi, R., Chou, C.F., Chen, C.Y. and Ramos, A. (2007) The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. Structure, 15, 485-498. (Pubitemid 46551731)