SCOPUS 정보 검색 플랫폼

Methods in Enzymology

Volumn 500, Issue , 2011, Pages 3-11

Systems biology left and right

(1) Westerhoff, Hans V a,b

a UNIVERSITY OF MANCHESTER (United Kingdom)

b VU UNIVERSITY AMSTERDAM (Netherlands)

Author keywords

Biochemistry; Genomics; In vivo; Molecular biology; Systems biology

Indexed keywords

ARTICLE; HUMAN; METHODOLOGY; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PUBLICATION; SCIENTIFIC LITERATURE; SYNTHETIC BIOLOGY; SYSTEMS BIOLOGY; TRAINING;

EID: 80053089722 PISSN: 00766879 EISSN: 15577988 Source Type: Book Series
DOI: 10.1016/B978-0-12-385118-5.00001-3 Document Type: Chapter

Times cited : (16)

References (35)

1
- 32044452595
- Springer-Verlag/GmbH & Co. K Berlin/Heidelberg
- L. Alberghina, and H.V. Westerhoff Systems Biology: Definitions and Perspectives (Topics in Current Genetics) 2005 Springer-Verlag/GmbH & Co. K Berlin/Heidelberg
- (2005) Systems Biology: Definitions and Perspectives (Topics in Current Genetics)
- Alberghina, L.¹ Westerhoff, H.V.²

2
- 34249079154
- Network motifs: Theory and experimental approaches
- DOI 10.1038/nrg2102, PII NRG2102
- U. Alon Network motifs: Theory and experimental approaches Nat. Rev. Genet. 8 2007 450 461 (Pubitemid 46789247)
- (2007) Nature Reviews Genetics , vol.8 , Issue.6 , pp. 450-461
- Alon, U.¹

3
- 0034102066
- Compartmentation protects trypanosomes from the dangerous design of glycolysis
- DOI 10.1073/pnas.030539197
- B.M. Bakker, F.I.C. Mensonides, B. Teusink, P. van Hoek, P.A.M. Michels, and H.V. Westerhoff Compartmentation protects trypanosomes from the dangerous design of glycolysis Proc. Natl. Acad. Sci. USA 97 2000 2087 2092 (Pubitemid 30134026)
- (2000) Proceedings of the National Academy of Sciences of the United States of America , vol.97 , Issue.5 , pp. 2087-2092
- Bakker, B.M.¹ Mensonides, F.I.C.² Teusink, B.³ Van Hoek, P.⁴ Michels, P.A.M.⁵ Westerhoff, H.V.⁶

4
- 85133419883
- Elsevier Science Amsterdam
- F.C. Boogerd, F.J. Bruggeman, J.H.S. Hofmeyr, and H.V. Westerhoff Systems Biology: Philosophical Foundations 2007 Elsevier Science Amsterdam
- (2007) Systems Biology: Philosophical Foundations
- Boogerd, F.C.¹ Bruggeman, F.J.² Hofmeyr, J.H.S.³ Westerhoff, H.V.⁴

5
- 17444406291
- The multifarious short-term regulation of ammonium assimilation of Escherichia coli: Dissection using an in silico replica
- DOI 10.1111/j.1742-4658.2005.04626.x
- F.J. Bruggeman, F.C. Boogerd, and H.V. Westerhoff The multifarious short-term regulation of ammonium assimilation of Escherichia coli: Dissection using an in silico replica FEBS J. 272 2005 1965 1985 (Pubitemid 40547252)
- (2005) FEBS Journal , vol.272 , Issue.8 , pp. 1965-1985
- Bruggeman, F.J.¹ Boogerd, F.C.² Westerhoff, H.V.³

6
- 0040661654
- On the method of theoretical physics
- A. Einstein On the method of theoretical physics Philos. Sci. 1 1934 163 169
- (1934) Philos. Sci. , vol.1 , pp. 163-169
- Einstein, A.¹

7
- 0347365859
- Control analysis of trophic chains
- DOI 10.1016/S0304-3800(03)00208-4
- W.M. Getz, H.V. Westerhoff, J.H.S. Hofmeyr, and J.L. Snoep Control analysis of trophic chains Ecol. Modell. 168 2003 153 171 (Pubitemid 37537931)
- (2003) Ecological Modelling , vol.168 , Issue.1-2 , pp. 153-171
- Getz, W.M.¹ Westerhoff, H.V.² Hofmeyr, J.-H.S.³ Snoep, J.L.⁴

8
- 56649116028
- Compartmentation prevents a lethal turbo-explosion of glycolysis in trypanosomes
- J.R. Haanstra, A. van Tuijl, P. Kessler, W. Reijnders, P.A.M. Michels, H.V. Westerhoff, M. Parsons, and B.M. Bakker Compartmentation prevents a lethal turbo-explosion of glycolysis in trypanosomes Proc. Natl. Acad. Sci. USA 105 2008 17718 17723
- (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 17718-17723
- Haanstra, J.R.¹ Van Tuijl, A.² Kessler, P.³ Reijnders, W.⁴ Michels, P.A.M.⁵ Westerhoff, H.V.⁶ Parsons, M.⁷ Bakker, B.M.⁸

9
- 70349231195
- Simplified yet highly accurate enzyme kinetics for cases of low substrate concentrations
- H.M. Hardin, A. Zagaris, K. Krab, and H.V. Westerhoff Simplified yet highly accurate enzyme kinetics for cases of low substrate concentrations FEBS J. 276 2009 5491 5506
- (2009) FEBS J. , vol.276 , pp. 5491-5506
- Hardin, H.M.¹ Zagaris, A.² Krab, K.³ Westerhoff, H.V.⁴

10
- 0029113159
- Signal transduction in bacteria: Phospho-neural network(s) in Escherichia coli?
- K.J. Hellingwerf, P.W. Postma, J. Tommassen, and H.V. Westerhoff Signal transduction in bacteria: Phospho-neural network(s) in Escherichia coli? FEMS Microbiol. Rev. 16 1995 309 321
- (1995) FEMS Microbiol. Rev. , vol.16 , pp. 309-321
- Hellingwerf, K.J.¹ Postma, P.W.² Tommassen, J.³ Westerhoff, H.V.⁴

11
- 0023051670
- Metabolic control analysis of moiety-conserved cycles
- J.H. Hofmeyr, H. Kacser, and K.J. van der Merwe Metabolic control analysis of moiety-conserved cycles Eur. J. Biochem. 155 1986 631 641
- (1986) Eur. J. Biochem. , vol.155 , pp. 631-641
- Hofmeyr, J.H.¹ Kacser, H.² Van Der Merwe, K.J.³

12
- 0034609791
- The large-scale organization of metabolic networks
- H. Jeong, B. Tombor, R. Albert, Z.N. Oltvai, and A.L. Barabasi The large-scale organization of metabolic networks Nature 407 2000 651 654
- (2000) Nature , vol.407 , pp. 651-654
- Jeong, H.¹ Tombor, B.² Albert, R.³ Oltvai, Z.N.⁴ Barabasi, A.L.⁵

13
- 33644524741
- Cell-signalling dynamics in time and space
- B.N. Kholodenko Cell-signalling dynamics in time and space Nat. Rev. Mol. Cell Biol. 7 2006 165 176
- (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 165-176
- Kholodenko, B.N.¹

14
- 84889389880
- Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
- E. Klipp, R. Herwig, A. Kowald, C. Wierling, and H. Lehrach Systems Biology in Practice: Concepts, Implementation, and Application 2005 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
- (2005) Systems Biology in Practice: Concepts, Implementation, and Application
- Klipp, E.¹ Herwig, R.² Kowald, A.³ Wierling, C.⁴ Lehrach, H.⁵

15
- 78650646102
- Design principles of nuclear receptor signaling: How complex networking improves signal transduction
- A.N. Kolodkin, F.J. Bruggeman, N. Plant, M.J. Mone, B.M. Bakker, M.J. Campbell, J.P. van Leeuwen, C. Carlberg, J.L. Snoep, and H.V. Westerhoff Design principles of nuclear receptor signaling: How complex networking improves signal transduction Mol. Syst. Biol. 6 2010 446
- (2010) Mol. Syst. Biol. , vol.6 , pp. 446
- Kolodkin, A.N.¹ Bruggeman, F.J.² Plant, N.³ Mone, M.J.⁴ Bakker, B.M.⁵ Campbell, M.J.⁶ Van Leeuwen, J.P.⁷ Carlberg, C.⁸ Snoep, J.L.⁹ Westerhoff, H.V.¹⁰

16
- 0019996706
- Amplification and adaptation in regulatory and sensory systems
- D.E. Koshland Jr., A. Goldbeter, and J.B. Stock Amplification and adaptation in regulatory and sensory systems Science 217 1982 220 225 (Pubitemid 12091224)
- (1982) Science , vol.217 , Issue.4556 , pp. 220-225
- Koshland Jr., D.E.¹ Goldbeter, A.² Stock, J.B.³

17
- 0003945869
- University of Chicago Press Chicago
- T.S. Kuhn The Structure of Scientific Revolutions 1962 University of Chicago Press Chicago
- (1962) The Structure of Scientific Revolutions
- Kuhn, T.S.¹

18
- 0034625005
- Cell signaling pathways as control modules: Complexity for simplicity?
- DOI 10.1073/pnas.97.10.5031
- D.A. Lauffenburger Cell signaling pathways as control modules: Complexity for simplicity? Proc. Natl. Acad. Sci. USA 97 2000 5031 5033 (Pubitemid 30313665)
- (2000) Proceedings of the National Academy of Sciences of the United States of America , vol.97 , Issue.10 , pp. 5031-5033
- Lauffenburger, D.A.¹

19
- 35748968807
- Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling
- DOI 10.1038/ncb1652, PII NCB1652
- C.I. Maeder, M.A. Hink, A. Kinkhabwala, R. Mayr, P.I.H. Bastiaens, and M. Knop Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling Nat. Cell Biol. 9 2007 1319 1326 (Pubitemid 350042364)
- (2007) Nature Cell Biology , vol.9 , Issue.11 , pp. 1319-1326
- Maeder, C.I.¹ Hink, M.A.² Kinkhabwala, A.³ Mayr, R.⁴ Bastiaens, P.I.H.⁵ Knop, M.⁶

20
- 36949083936
- Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism
- P. Mitchell Coupling of phosphorylation to electron and hydrogen transfer by a chemi-osmotic type of mechanism Nature 191 1961 144 148
- (1961) Nature , vol.191 , pp. 144-148
- Mitchell, P.¹

21
- 0032485826
- Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions
- DOI 10.1016/S0301-4622(98)00133-1, PII S0301462298001331
- B. Novak, A. Csikasz-Nagy, B. Gyorffy, K. Chen, and J.J. Tyson Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions Biophys. Chem. 72 1998 185 200 (Pubitemid 28267527)
- (1998) Biophysical Chemistry , vol.72 , Issue.1-2 , pp. 185-200
- Novak, B.¹ Csikasz-Nagy, A.² Gyorffy, B.³ Chen, K.⁴ Tyson, J.J.⁵

22
- 9744248681
- Yeast glycolytic oscillations that are not controlled by a single oscillophore: A new definition of oscillophore strength
- DOI 10.1016/j.jtbi.2004.08.019, PII S0022519304004011
- K.A. Reijenga, Y.M. van Megen, B.W. Kooi, B.M. Bakker, J.L. Snoep, H.W. van Verseveld, and H.V. Westerhoff Yeast glycolytic oscillations that are not controlled by a single oscillophore: A new definition of oscillophore strength J. Theor. Biol. 232 2005 385 398 (Pubitemid 39585158)
- (2005) Journal of Theoretical Biology , vol.232 , Issue.3 , pp. 385-398
- Reijenga, K.A.¹ Van Megen, Y.M.G.A.² Kooi, B.W.³ Bakker, B.M.⁴ Snoep, J.L.⁵ Van Verseveld, H.W.⁶ Westerhoff, H.V.⁷

23
- 0024569342
- Regulation of Escherichia coli glutamine synthetase
- S.G. Rhee, P.B. Chock, and E.R. Stadtman Regulation of Escherichia coli glutamine synthetase Adv. Enzymol. Relat. Areas Mol. Biol. 62 1989 37 92
- (1989) Adv. Enzymol. Relat. Areas Mol. Biol. , vol.62 , pp. 37-92
- Rhee, S.G.¹ Chock, P.B.² Stadtman, E.R.³

24
- 33846088428
- Ecological control analysis: Being(s) in control of mass flux and metabolite concentrations in anaerobic degradation processes
- DOI 10.1111/j.1462-2920.2006.01167.x
- W.F.M. Roling, B.M. van Breukelen, F.J. Bruggeman, and H.V. Westerhoff Ecological control analysis: Being(s) in control of mass flux and metabolite concentrations in anaerobic degradation processes Environ. Microbiol. 9 2007 500 511 (Pubitemid 46072136)
- (2007) Environmental Microbiology , vol.9 , Issue.2 , pp. 500-511
- Roling, W.F.M.¹ Van Breukelen, B.M.² Bruggeman, F.J.³ Westerhoff, H.V.⁴

25
- 32044435851
- Towards building the silicon cell: A modular approach
- DOI 10.1016/j.biosystems.2005.07.006, PII S0303264705001292
- J.L. Snoep, F. Bruggeman, B.G. Olivier, and H.V. Westerhoff Towards building the silicon cell: A modular approach Biosystems 83 2006 207 216 (Pubitemid 43199821)
- (2006) BioSystems , vol.83 , Issue.2-3 SPEC. ISS. , pp. 207-216
- Snoep, J.L.¹ Bruggeman, F.² Olivier, B.G.³ Westerhoff, H.V.⁴

26
- 0032077442
- The danger of metabolic pathways with turbo design
- DOI 10.1016/S0968-0004(98)01205-5
- B. Teusink, M.C. Walsh, K. van Dam, and H.V. Westerhoff The danger of metabolic pathways with turbo design Trends Biochem. Sci. 23 1998 162 169 (Pubitemid 28261032)
- (1998) Trends in Biochemical Sciences , vol.23 , Issue.5 , pp. 162-169
- Teusink, B.¹ Walsh, M.C.² Van Dam, K.³ Westerhoff, H.V.⁴

27
- 0035656416
- Network dynamics and cell physiology
- DOI 10.1038/35103078
- J.J. Tyson, K. Chen, and B. Novak Network dynamics and cell physiology Nat. Rev. Mol. Cell Biol. 2 2001 908 916 (Pubitemid 33674090)
- (2001) Nature Reviews Molecular Cell Biology , vol.2 , Issue.12 , pp. 908-916
- Tyson, J.J.¹ Chen, K.² Novak, B.³

28
- 75149190447
- Measuring enzyme activities under standardized in vivo-like conditions for systems biology
- K. van Eunen, J. Bouwman, P. Daran-Lapujade, J. Postmus, A.B. Canelas, F.I. Mensonides, R. Orij, I. Tuzun, J. van den Brink, and G.J. Smits Measuring enzyme activities under standardized in vivo-like conditions for systems biology FEBS J. 277 2010 749 760
- (2010) FEBS J. , vol.277 , pp. 749-760
- Van Eunen, K.¹ Bouwman, J.² Daran-Lapujade, P.³ Postmus, J.⁴ Canelas, A.B.⁵ Mensonides, F.I.⁶ Orij, R.⁷ Tuzun, I.⁸ Van Den Brink, J.⁹ Smits, G.J.¹⁰

29
- 5044227742
- The evolution of molecular biology into systems biology
- DOI 10.1038/nbt1020
- H.V. Westerhoff, and B.O. Palsson The evolution of molecular biology into systems biology Nat. Biotechnol. 22 2004 1249 1252 (Pubitemid 39336777)
- (2004) Nature Biotechnology , vol.22 , Issue.10 , pp. 1249-1252
- Westerhoff, H.V.¹ Palsson, B.O.²

30
- 0003717352
- Elsevier Science Publishers B.V. (Biomedical Division) Amsterdam
- H.V. Westerhoff, and K. Van Dam Thermodynamics and Control of Biological Free-Energy Transduction 1987 Elsevier Science Publishers B.V. (Biomedical Division) Amsterdam
- (1987) Thermodynamics and Control of Biological Free-Energy Transduction
- Westerhoff, H.V.¹ Van Dam, K.²

31
- 0019882128
- The hypothesis of localized chemiosmosis is unsatisfactory
- H.V. Westerhoff, A.L.M. Simonetti, and K. Van Dam The hypothesis of localized chemiosmosis is unsatisfactory Biochem. J. 200 1981 193 202
- (1981) Biochem. J. , vol.200 , pp. 193-202
- Westerhoff, H.V.¹ Simonetti, A.L.M.² Van Dam, K.³

32
- 0021720658
- A minimal hypothesis for membrane-linked free-energy transduction. The role of independent, small coupling units
- DOI 10.1016/0304-4173(84)90019-3
- H.V. Westerhoff, B.A. Melandri, G. Venturoli, G.F. Azzone, and D.B. Kell A minimal-hypothesis for membrane-linked free-energy transduction - The role of independent, small coupling units Biochim. Biophys. Acta 768 1984 257 292 (Pubitemid 15194363)
- (1984) Biochimica et Biophysica Acta - Reviews on Bioenergetics , vol.768 , Issue.3-4 , pp. 257-292
- Westerhoff, H.V.¹ Melandri, B.A.² Venturoli, G.³

33
- 0023895057
- DNA supercoiling by DNA gyrase - A static head analysis
- H.V. Westerhoff, M.H. Odea, A. Maxwell, and M. Gellert DNA supercoiling by DNA gyrase - A static head analysis Cell Biophys. 12 1988 157 181
- (1988) Cell Biophys. , vol.12 , pp. 157-181
- Westerhoff, H.V.¹ Odea, M.H.² Maxwell, A.³ Gellert, M.⁴

34
- 71149097660
- Systems Biology: The elements and principles of life
- H.V. Westerhoff, C. Winder, H. Messiha, E. Simeonidis, M. Adamczyk, M. Verma, F.J. Bruggeman, and W. Dunn Systems Biology: The elements and principles of life FEBS Lett. 583 24 2009 3882 3890
- (2009) FEBS Lett. , vol.583 , Issue.24 , pp. 3882-3890
- Westerhoff, H.V.¹ Winder, C.² Messiha, H.³ Simeonidis, E.⁴ Adamczyk, M.⁵ Verma, M.⁶ Bruggeman, F.J.⁷ Dunn, W.⁸

35
- 77957278546
- Systems biochemistry in practice: Experimenting with modelling and understanding, with regulation and control
- H.V. Westerhoff, M. Verma, M. Nardelli, M. Adamczyk, K. van Eunen, E. Simeonidis, and B.M. Bakker Systems biochemistry in practice: Experimenting with modelling and understanding, with regulation and control Biochem. Soc. Trans. 38 2010 1189 1196
- (2010) Biochem. Soc. Trans. , vol.38 , pp. 1189-1196
- Westerhoff, H.V.¹ Verma, M.² Nardelli, M.³ Adamczyk, M.⁴ Van Eunen, K.⁵ Simeonidis, E.⁶ Bakker, B.M.⁷

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.