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Volumn 6833 LNBI, Issue , 2011, Pages 76-91

Removing noise from gene trees

Author keywords

[No Author keywords available]

Indexed keywords

GENE FAMILIES; GENE TREE; OPTIMIZATION PROBLEMS; POLYNOMIAL-TIME ALGORITHMS; SIMULATED DATASETS; SPECIAL CLASS;

EID: 80053016207     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-23038-7_8     Document Type: Conference Paper
Times cited : (10)

References (29)
  • 1
    • 0006683426 scopus 로고    scopus 로고
    • Maximum agreement subtree in a set of evolutionary trees: Matrics and efficient algorithms
    • Amir, A., Keselman, D.: Maximum agreement subtree in a set of evolutionary trees: matrics and efficient algorithms. SIAM J. Computing 26, 1656-1669 (1997)
    • (1997) SIAM J. Computing , vol.26 , pp. 1656-1669
    • Amir, A.1    Keselman, D.2
  • 3
    • 27844468683 scopus 로고    scopus 로고
    • Reconciling a gene tree to a species tree under the duplication cost model
    • Bonizzoni, P., Della Vedova, G., Dondi, R.: Reconciling a gene tree to a species tree under the duplication cost model. Theoretical Computer Science 347, 36-53 (2005)
    • (2005) Theoretical Computer Science , vol.347 , pp. 36-53
    • Bonizzoni, P.1    Della Vedova, G.2    Dondi, R.3
  • 4
    • 52449122374 scopus 로고    scopus 로고
    • Gene family evolution by duplication, speciation and loss
    • Chauve, C., Doyon, J.-P., El-Mabrouk, N.: Gene family evolution by duplication, speciation and loss. J. Comput. Biol. 15, 1043-1062 (2008)
    • (2008) J. Comput. Biol. , vol.15 , pp. 1043-1062
    • Chauve, C.1    Doyon, J.-P.2    El-Mabrouk, N.3
  • 5
    • 67650324396 scopus 로고    scopus 로고
    • New perspectives on gene family evolution: Losses in reconciliation and a link with supertrees
    • Batzoglou, S. (ed.) RECOMB 2009. Springer, Heidelberg
    • Chauve, C., El-Mabrouk, N.: New perspectives on gene family evolution: Losses in reconciliation and a link with supertrees. In: Batzoglou, S. (ed.) RECOMB 2009. LNCS, vol. 5541, pp. 46-58. Springer, Heidelberg (2009)
    • (2009) LNCS , vol.5541 , pp. 46-58
    • Chauve, C.1    El-Mabrouk, N.2
  • 7
    • 0035189546 scopus 로고    scopus 로고
    • An o(n log n) algorithm for the maximum agreement subtree problem for binary trees
    • Cole, R., Farach-Colton, M., Hariharan, R., Przytycka, T., Thorup, M.: An o(n log n) algorithm for the maximum agreement subtree problem for binary trees. SIAM J. Computing 30(5), 1385-1404 (2000)
    • (2000) SIAM J. Computing , vol.30 , Issue.5 , pp. 1385-1404
    • Cole, R.1    Farach-Colton, M.2    Hariharan, R.3    Przytycka, T.4    Thorup, M.5
  • 10
    • 33645981936 scopus 로고    scopus 로고
    • A hybrid micro-macroevolutionary approach to gene tree reconstruction
    • Durand, D., Haldórsson, B.V., Vernot, B.: A hybrid micro-macroevolutionary approach to gene tree reconstruction. Journal of Computational Biology 13, 320-335 (2006)
    • (2006) Journal of Computational Biology , vol.13 , pp. 320-335
    • Durand, D.1    Haldórsson, B.V.2    Vernot, B.3
  • 11
    • 0042027896 scopus 로고    scopus 로고
    • Structural dynamics of eukaryotic chromosome evolution
    • Eichler, E.E., Sankoff, D.: Structural dynamics of eukaryotic chromosome evolution. Science 301, 793-797 (2003)
    • (2003) Science , vol.301 , pp. 793-797
    • Eichler, E.E.1    Sankoff, D.2
  • 12
  • 13
    • 0000365320 scopus 로고
    • Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
    • Goodman, M., Czelusniak, J., Moore, G.W., Romero-Herrera, A.E., Matsuda, G.: Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Systematic Zoology 28, 132-163 (1979)
    • (1979) Systematic Zoology , vol.28 , pp. 132-163
    • Goodman, M.1    Czelusniak, J.2    Moore, G.W.3    Romero-Herrera, A.E.4    Matsuda, G.5
  • 14
    • 33746345337 scopus 로고    scopus 로고
    • DLS-trees: A model of evolutionary scenarios
    • Gorecki, P., Tiuryn, J.: DLS-trees: a model of evolutionary scenarios. Theoretical Computer Science 359, 378-399 (2006)
    • (2006) Theoretical Computer Science , vol.359 , pp. 378-399
    • Gorecki, P.1    Tiuryn, J.2
  • 16
    • 37249034790 scopus 로고    scopus 로고
    • Bias in phylogenetic tree reconciliation methods: Implications for vertebrate genome evolution
    • Hahn, M.W.: Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution. Genome Biology 8(R141) (2007)
    • (2007) Genome Biology , vol.8 , Issue.R141
    • Hahn, M.W.1
  • 17
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 drosophilia genomes
    • Hahn, M.W., Han, M.V., Han, S.-G.: Gene family evolution across 12 drosophilia genomes. PLoS Genetics 3, e197 (2007)
    • (2007) PLoS Genetics , vol.3
    • Hahn, M.W.1    Han, M.V.2    Han, S.-G.3
  • 18
    • 2442573762 scopus 로고    scopus 로고
    • Simultaneous identification of duplications and lateral transfers
    • ACM, New York
    • Hallett, M., Lagergren, J., Tofigh, A.: Simultaneous identification of duplications and lateral transfers. In: RECOMB. ACM, New York (2004)
    • (2004) RECOMB
    • Hallett, M.1    Lagergren, J.2    Tofigh, A.3
  • 19
    • 0035865239 scopus 로고    scopus 로고
    • Evolutionary analysis of the human genome
    • Li, W.H., Gu, Z., Wang, H., Nekrutenko, A.: Evolutionary analysis of the human genome. Nature 409, 847-849 (2001)
    • (2001) Nature , vol.409 , pp. 847-849
    • Li, W.H.1    Gu, Z.2    Wang, H.3    Nekrutenko, A.4
  • 20
    • 0034938644 scopus 로고    scopus 로고
    • From gene trees to species trees
    • Ma, B., Li, M., Zhang, L.: From gene trees to species trees. SIAM J. on Comput. 30, 729-752 (2000)
    • (2000) SIAM J. on Comput. , vol.30 , pp. 729-752
    • Ma, B.1    Li, M.2    Zhang, L.3
  • 22
    • 12044253257 scopus 로고
    • Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas
    • Page, R.D.M.: Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas. Systematic Biology 43, 58-77 (1994)
    • (1994) Systematic Biology , vol.43 , pp. 58-77
    • Page, R.D.M.1
  • 23
    • 0031774059 scopus 로고    scopus 로고
    • Genetree: Comparing gene and species phylogenies using reconciled trees
    • Page, R.D.M.: Genetree: comparing gene and species phylogenies using reconciled trees. Bioinformatics 14, 819-820 (1998)
    • (1998) Bioinformatics , vol.14 , pp. 819-820
    • Page, R.D.M.1
  • 25
    • 34248217100 scopus 로고    scopus 로고
    • Inferring angiosperm phylogeny from EST data with widespread gene duplication
    • Sanderson, M.J., McMahon, M.M.: Inferring angiosperm phylogeny from EST data with widespread gene duplication. BMC Evolutionary Biology 7, S3 (2007)
    • (2007) BMC Evolutionary Biology , vol.7
    • Sanderson, M.J.1    McMahon, M.M.2
  • 26
    • 0027912455 scopus 로고
    • Kaikoura tree theorems:computing the maximum agreement subtree
    • Steel, M., Warnow, T.: Kaikoura tree theorems:computing the maximum agreement subtree. Inform. Process. Lett. 48, 77-82 (1993)
    • (1993) Inform. Process. Lett. , vol.48 , pp. 77-82
    • Steel, M.1    Warnow, T.2
  • 28
    • 34548501747 scopus 로고    scopus 로고
    • Natural history and evolutionary principles of gene duplication in fungi
    • Wapinski, I., Pfeffer, A., Friedman, N., Regev, A.: Natural history and evolutionary principles of gene duplication in fungi. Nature 449, 54-61 (2007)
    • (2007) Nature , vol.449 , pp. 54-61
    • Wapinski, I.1    Pfeffer, A.2    Friedman, N.3    Regev, A.4
  • 29
    • 0030762443 scopus 로고    scopus 로고
    • On Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies
    • Zhang, L.X.: On Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. Journal of Computational Biology 4, 177-188 (1997)
    • (1997) Journal of Computational Biology , vol.4 , pp. 177-188
    • Zhang, L.X.1


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