Response of a summertime Antarctic marine bacterial community to glucose and ammonium enrichment

Aquatic Microbial Ecology

Volumn 64, Issue 3, 2011, Pages 205-220

  Ducklow, Hugh W ^a   Myers, Kristen M S ^a   Erickson, Matthew ^a   Ghiglione, Jean François ^b,c   Murray, Alison E ^d  

^a MARINE BIOLOGICAL LABORATORY   (United States)

^b CNRS   (France)

^c SORBONNE UNIVERSITÉ   (France)

^d DESERT RESEARCH INSTITUTE   (United States)

Author keywords

Antarctica; Bacterial community composition; Bioassay; Marine bacterioplankton

Indexed keywords

ALGAE; BACTERIA (MICROORGANISMS);

EID: 80053016177     PISSN: 09483055     EISSN: None     Source Type: Journal    
DOI: 10.3354/ame01519     Document Type: Review

References (86)

1. Abell GCJ, Bowman JP (2005) Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol 51: 265-277 (Pubitemid 40038386)
2. Alonso-Sáez L, Vázquez-Domínguez E, Cardelús C, Pinhassi J and others (2008) Factors controlling the year-round variability in carbon flux through bacteria in a coastal marine system. Ecosystems 11: 397-409
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410
4. Bano N, Hollibaugh JT (2002) Phylogenetic Composition of bacterioplankton assemblages from the Arctic Ocean. Appl Environ Microbiol 68: 505-518 (Pubitemid 34113034)
5. Billen G, Becquevort S (1991) Phytoplankton-bacteria relationship in the Antarctic marine ecosystem. Polar Res 10: 245-253 (Pubitemid 23398419)
6. Billen G, Servais P, Becquevort S (1990) Dynamics of bacterio - plankton in oligotrophic and eutrophic aquatic environments: bottom-up or top-down control? Hydrobiologia 207: 37-42
7. Carlson CA (2001) Production, consumption and cycling of dissolved organic matter in the ocean. In: Hansell DA, Carlson CA (eds) Biogeochemistry of marine dissolved organic matter, Chap 15. Academic Press, New York, NY
8. Carlson CA, Ducklow HW (1996) Growth of bacterioplankton and consumption of dissolved organic carbon in the Sargasso Sea. Aquat Microb Ecol 10: 69-85
9. Carlson CA, Hansell DA, Peltzer ET, Smith J, Walker O (2000) Stocks and dynamics of dissolved and particulate organic matter in the southern Ross Sea, Antarctica. Deep-Sea Res II 47: 3201-3225 (Pubitemid 32039886)
10. Chrost RJ, Adamczewski T, Kalinowska K, Skowronska A (2009) Effect of organic phosphorus and nitrogen enrichment of mesotrophic lake water on dynamics and diversity of planktonic microbial communities-DNA and protein case studies (mesocosm experiments). Pol J Microbiol 58: 163-180
11. Church MJ (2008) Resource control of bacterial dynamics in the sea. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, Hoboken, NJ, p 335-382
12. Church MJ, Hutchins DA, Ducklow HW (2000) Limitation of bacterial growth by dissolved organic matter and iron in the Southern Ocean. Appl Environ Microbiol 66: 455-466 (Pubitemid 30082727)
13. Church MJ, Ducklow HW, Karl DM (2002) Temporal variability in dissolved organic matter stocks in the Central North Pacific Gyre. Limnol Oceanogr 47: 1-10 (Pubitemid 34115269)
14. Church MJ, DeLong EF, Ducklow HW, Karner MB, Preston CM, Karl DM (2003) Abundance and distribution of planktonic Archaea and Bacteria in the waters west of the Antarctic Peninsula. Limnol Oceanogr 48: 1893-1902 (Pubitemid 37207595)
15. Cole JJ, Likens GE, Strayer DL (1982) Photosynthetically produced dissolved organic carbon: an important carbon source for planktonic bacteria. Limnol Oceanogr 27: 1080-1090
16. Cole JJ, Caracao NF, Strayer DL, Ochss C, Nolan S (1989) A detailed organic carbon budget as an ecosystem-level calibration of bacterial respiration in an oligotrophic lake during midsummer. Limnol Oceanogr 34: 286-297
17. del Giorgio PA, Cole JJ (2000) Bacterial energetics and growth efficiency. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, NY, p 289-325
18. Delbès C, Godon JJ, Moletta R (1998) 16S rDNA sequence diversity of a culture-accessible part of anaerobic digestor bacterial community. Anaerobe 4: 267-275 (Pubitemid 29353672)
19. DeSantis TZ Jr, Hugenholtz P, Keller K, Brodie EL and others (2006) NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 34: W394-W399 (Pubitemid 44529801)
20. Ducklow HW (2008) Long-term studies of the marine ecosystem along the west Antarctic Peninsula. Deep-Sea Res II 55: 1945-1948
21. Ducklow HW, Yager PL (2006) Pelagic bacterial processes in polynyas. In: Smith WO, Barber JD (eds) Polynyas: Windows into polar oceans. Elsevier/CRC, New York, NY
22. Ducklow HW, Carlson CA, Bates NR, Knap AH, Michaels AF (1995) Dissolved organic carbon as a component of the biological pump in the North Atlantic Ocean. Philos Trans R Soc Lond B Biol Sci 348: 161-167 (Pubitemid 26438009)
23. Ducklow HW, Dickson ML, Kirchman DL, Steward G, Orchardo J, Marra J, Azam F (2000) Constraining bacterial production, conversion efficiency and respiration in the Ross Sea, Antarctica, January-February 1997. Deep-Sea Res II 47: 3227-3247 (Pubitemid 32039887)
24. Ducklow HW, Carlson C, Church M, Kirchman D, Smith D, Steward G (2001) The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica, 1994-1997. Deep-Sea Res II 48: 4199-4221 (Pubitemid 34029737)
25. Ducklow HW, Baker K, Martinson DG, Quetin LB and others (2007) Marine ecosystems: The West Antarctic Peninsula. Philos Trans R Soc Lond B Biol Sci 362: 67-94 (Pubitemid 47055512)
26. Ducklow HW, Moran XAG, Murray AE (2010) Bacteria in the greenhouse: marine microbes and climate change. In: Gu RMaj-D (ed) Environmental microbiology, 2nd edn. Wiley-Blackwell, Hoboken, NJ, p 363
27. Ducklow H, Clarke A, Dickhut R, Doney SC and others (2011) The Marine ecosystem of the West Antarctic Peninsula. In: Rogers A, Johnston N, Clarke A, Murphy E (eds) Antarctica: an extreme environment in a changing world. Wiley- Blackwell, London (in press)
28. Fandino LB, Riemann L, Steward GF, Long RA, Azam F (2001) Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat Microb Ecol 23: 119-130 (Pubitemid 34253476)
29. 2 measurements. PICES Special Publication 3; Tech rep, section SOP 7:1-5, Sidney (BC, Canada)
30. Fisher MM, Klug JL, Lauster G, Newton M, Triplett EW (2000) Effects of resources and trophic interactions on freshwater bacterioplankton diversity. Microb Ecol 40: 125-138
31. Flaten GAF, Castberg T, Tanaka T, Thingstad TF (2003) Interpretation of nutrient-enrichment bioassays by looking at sub-populations in a marine bacterial community. Aquat Microb Ecol 33: 11-18 (Pubitemid 37171946)
32. Fuchs BM, Zubkov MV, Sahm K, Burkill PH, Amann R (2000) Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environ Microbiol 2: 191-201 (Pubitemid 33136714)
33. Fuhrman JA (2009) Microbial community structure and its functional implications. Nature 459: 193-199
34. Fuhrman JA, Azam F (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California. Appl Environ Microbiol 39: 1085-1095 (Pubitemid 10001970)
35. Fuhrman JA, Ammerman JW, Azam F (1980) Bacterioplankton in the coastal euphotic zone: distribution, activity and possible relationships with phytoplankton. Mar Biol 60: 201-207
36. Garneau ME, Roy S, Lovejoy C, Gratton Y, Vincent WF (2008) Seasonal dynamics of bacterial biomass and production in a coastal arctic ecosystem: Franklin Bay, western Cana dian Arctic. J Geophys Res 113:C07S91 doi: 10.1029/2007JC 004281
37. Gasol JM, del Giorgio PA (2000) Using flow cytrometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar 64:197-224 (Pubitemid 30615216)
38. Ghiglione JF, Larcher M, Lebaron P (2005) Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea. Aquat Microb Ecol 40: 229-240 (Pubitemid 41652965)
39. Goldman JC, Dennett MR (1991) Ammonium regeneration and carbon utilization by marine bacteria grown on mixed substrates. Mar Biol 109: 369-378
40. Goldman JC, Caron DA, Dennett MR (1987) Regulation of gross growth efficiency and ammonium regeneration in bacteria by substrate C: N ratio. Limnol Oceanogr 32: 1239-1252
41. Judd KE, Crump BC, Kling GW (2006) Variation in dissolved organic matter controls bacterial production and community composition. Ecology 87: 2068-2079 (Pubitemid 44215732)
42. Karl DM (1993) Microbial processes in the southern oceans. In: Friedman IE (ed) Antarctic microbiology. Wiley-Liss, New York, NY, p 1-63
43. Karl DM, Christian JR, Dore JE, Letelier RM (1996) Microbiological oceanography in the region west of the Antarctic Peninsula: microbial dynamics, nitrogen cycle and carbon flux. In: Ross RM, Hofmann EE, Quetin LB (eds) Foundations for ecological research west of the Antarctic Peninsula, Vol 70. American Geophysical Union, Washington, DC, p 303-332
44. Kent AD, Jones SE, Lauster GH, Graham JM, Newton RJ, McMahon KD (2006) Experimental manipulations of microbial food web interactions in a humic lake: shift - ing biological drivers of bacterial community structure. Environ Microbiol 8: 1448-1459 (Pubitemid 44025337)
45. Kirchman D, K'nees E, Hodson R (1985) Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Appl Environ Microbiol 49: 599-607 (Pubitemid 15138048)
46. Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100 (Pubitemid 34251208)
47. Kirchman DL, Meon B, Ducklow HW, Carlson CA, Hansell DA, Steward GF (2001) Glucose fluxes and concentrations of dissolved combined neutral sugars (polysaccharides) in the Ross Sea and Polar Front Zone, Antarctica. Deep-Sea Res II 48: 4179-4197 (Pubitemid 34029736)
48. Kirchman DL, Malmstrom RR, Cottrell MT (2005) Control of bacterial growth by temperature and organic matter in the Western Arctic. Deep-Sea Res II 52: 3386-3395 (Pubitemid 41767555)
49. Kirchman DL, Moran XAG, Ducklow H (2009) Microbial growth in the polar oceans: role of temperature and potential impact of climate change. Nat Rev Microbiol 7: 451-459
50. Kottmeier ST, Sullivan CW (1987) Late winter primary production and bacterial production in sea ice and seawater west of the Antarctic Peninsula. Mar Ecol Prog Ser 36: 287-298
51. Leakey RJG, Archer SD, Grey J (1996) Microbial dynamics in coastal waters of East Antarctica: bacterial production and nanoflagellate bacterivory. Mar Ecol Prog Ser 142: 3-17
52. Lebaron P, Servais P, Troussellier M, Courties C and others (1999) Changes in bacterial community structure in seawater mesocosm differing in their nutrient status. Aquat Microb Ecol 19: 255-267
53. Lee DH, Zo YG, Kim SJ (1996) Non-radioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism. Appl Environ Microbiol 62: 3112-3120
54. Ley RE, Harris JK, Wilcox J, Spear JR and others (2006) Unexpected diversity and complexity of the Guerrero Negro Hypersaline Microbial Mat. Appl Environ Microbiol 72: 3685-3695 (Pubitemid 43728026)
55. Manganelli M, Malfatti F, Samo TJ, Mitchell BG, Wang H, Azam F (2009) Major role of microbes in carbon fluxes during Austral winter in the Southern Drake Passage. PLoS ONE 4: e6941
56. Meredith MP, King JC (2005) Rapid climate change in the ocean west of the Antarctic Peninsula during the second half of the 20th century. Geophys Res Lett 32: L19604 doi: 10.1029/ 2005GL024042
57. Moline MA, Prézelin BB (1996) Long-term monitoring and analyses of physical factors regulating variability in coastal Antarctic phytoplankton biomass, in situ productivity and taxonomic composition over subseasonal, seasonal and interannual time scales. Mar Ecol Prog Ser 145: 143-160
58. Montes-Hugo M, Doney SC, Ducklow HW, Fraser W, Martinson D, Stammerjohn SE, Schofield O (2009) Recent changes in phytoplankton communities associated with rapid regional climate change along the Western Antarctic Peninsula. Science 323: 1470-1473
59. Morán XAG, Gasol JM, Pédros-AliÓ C, Estrada M (2001) Dissolved and particulate primary production and bacterial production in offshore Antarctic waters during Austral summer: coupled or uncoupled? Mar Ecol Prog Ser 222: 25-39 (Pubitemid 33141571)
60. Morán XAG, Sebastián M, PedrÓs-AliÓ C, Estrada M (2006) Response of Southern Ocean phytoplankton and bacterioplankton production to short-term experimental warming. Limnol Oceanogr 51: 1791-1800 (Pubitemid 44185730)
61. Murray AE, Grzymski JJ (2007) Diversity and genomics of Antarctic marine micro-organisms. Philos Trans R Soc Lond B Biol Sci 362: 2259-2271
62. Murray AE, Hollibaugh JT, Orrego C (1996) Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl Environ Microbiol 62: 2676-2680 (Pubitemid 26235282)
63. Murray AE, Preston CM, Massana R, Taylor LT, Blakis A, Wu K, DeLong EF (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters off Anvers Island, Antarctica. Appl Environ Microbiol 64: 2585-2595 (Pubitemid 28303304)
64. Murray AE, Arnosti C, De La Rocha CL, Grossart HP, Passow U (2007) Microbial dynamics in autotrophic and heterotrophic seawater mesocosms. II. Bacterioplankton community structure and hydrolytic enzyme activities. Aquat Microb Ecol 49: 123-141 (Pubitemid 351525783)
65. Nagata T (2008) Organic matter-bacteria interactions in seawater. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley-Blackwell, Hoboken, NJ, p 207-242
66. Pomeroy LR, Wiebe WJ (2001) Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria. Aquat Microb Ecol 23: 187-204 (Pubitemid 34253481)
67. Pomeroy LR, Macko SA, Ostrom PH, Dunphy J (1990) The microbial food web in Arctic seawater: concentration of dissolved free amino acids and bacterial abundance and activity in the Arctic Ocean and in Resolute Passage. Mar Ecol Prog Ser 61: 31-40
68. Rich J, Gosselin M, Sherr E, Sherr B, Kirchman DL (1997) High bacterial production, uptake and concentrations of dissolved organic matter in the Central Arctic Ocean. Deep Sea Res II 44: 1645-1663 (Pubitemid 28159081)
69. Rivkin RB (1991) Seasonal patterns of planktonic production in McMurdo Sound, Antarctica. Am Zool 3: 5-16
70. Rivkin RB, Anderson RM (1997) Inorganic nutrient limitation of oceanic bacterioplankton. Limnol Oceanogr 42: 730-740 (Pubitemid 27468396)
71. Robinson C (2008) Heterotrophic bacterial respiration. In: Kirchman DL (ed) Microbial ecology of the oceans, 2nd edn. Wiley, Hoboken, NJ, p 299-334
72. Ross RM, Hofmann EE, Quetin LB (eds) (1996) Foundations for ecological research west of the Antarctic Peninsula, Vol 70. American Geophysical Union, Washington, DC
73. Sandaa RA, GÓmez-Consarnau L, Pinhassi J, Riemann L and others (2009) Viral control of bacterial biodiversity-evidence from a nutrient-enriched marine mesocosm experiment. Environ Microbiol 11: 2585-2597
74. Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506 (Pubitemid 40396689)
75. Sharp JH, Benner R, Carlson CA, Dow R, Fitzwater SE (1993) Re-evaluation of high-temperature combustion and chemical oxidation measurements of dissolved organic carbon in seawater. Limnol Oceanogr 38: 1774-1782
76. Smith RC, Stammerjohn SE, Baker KS (1996) Surface air temperature variations in the western Antarctic peninsula region. In: Ross RM, Hofmann EE, Quetin LB (eds) Foundations for ecological research west of the Antarctic Peninsula, Vol 70. American Geophysical Union, Washington, DC, p 105-121
77. Smith RC, Martinson DG, Stammerjohn SE, Iannuzzi RA, Ireson K (2008) Bellingshausen and western Antarctic Peninsula region: pigment biomass and sea-ice spatial/temporal distributions and interannual variabilty. Deep-Sea Res II 55: 1949-1963
78. Smith WO Jr, Marra J, Hiscock MR, Barber RT (2000) The seasonal cycle of phytoplankton biomass and primary productivity in the Ross Sea, Antarctica. Deep-Sea Res II 47: 3119-3140 (Pubitemid 32039883)
79. Straza TRA, Ducklow HW, Murray AE, Kirchman DL (2010) Abundance and single-cell activity of bacterial groups in Antarctic coastal waters. Limnol Oceanogr 55: 2513-2525
80. SunamuraM, Higashi Y, Miyako C, Ishibashi Ji, Maruyama A (2004) Two bacteria phylotypes are predominant in the Suiyo Seamount Hydrothermal Plume. Appl Environ Microbiol 70: 1190-1198 (Pubitemid 38568248)
81. Suzuki M, Rappé MS, Giovannoni SJ (1998) Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64: 4522-4529 (Pubitemid 28538028)
82. Teira E, Martínez-Garcia S, Lønborg C, Álvarez- Salgado XA (2009) Growth rates of different phylogenetic bacterioplankton groups in a coastal upwelling system. Environ Microbiol Rep 1: 545-554
83. Thingstad TF, Hagstrom A, Rassoulzadegan F (1997) Accumulation of degradable DOC in surface waters: Is it caused by a malfunctioning microbial loop? Limnol Oceanogr 42: 398-404 (Pubitemid 27422914)
84. Vaughan DG, Marshall GJ, Connolley WM, Parkinson C and others (2003) Recent rapid regional climate warming on the Antarctic Peninsula. Clim Change 60: 243-274 (Pubitemid 37365191)
85. Vernet M, Martinson D, Iannuzzi R, Stammerjohn S and others (2008) Primary production within the sea-ice zone west of the Antarctic Peninsula: I-Sea ice, summer mixed layer, and irradiance. Deep-Sea Res II 55: 2068-2085
86. Walsh DA, Zaikova E, Howes CG, Song YC and others (2009) Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326: 578-582