Podzolisation and exportation of organic matter in black waters of the Rio Negro (upper Amazon basin, Brazil)

Biogeochemistry

Volumn 106, Issue 1, 2011, Pages 71-88

  Bardy, Marion ^a,b   Derenne, Sylvie ^a   Allard, Thierry ^b   Benedetti, Marc F ^c   Fritsch, Emmanuel ^b  

^a UPMC University Paris 06   (France)

^b UNIVERSITÉ PIERRE ET MARIE CURIE   (France)

^c UNIVERSITÉ PARIS DESCARTES   (France)

Author keywords

Amazon basin; Black waters; Podzols; Water extractable organic matter

Indexed keywords

COLOR; DRAINAGE NETWORK; HYDROLYSIS; LATERITE; METHYLATION; MOLECULAR ANALYSIS; NUCLEAR MAGNETIC RESONANCE; ORGANIC MATTER; PODZOL; PODZOLIZATION; REMOBILIZATION; SOIL PROFILE; SOIL WATER; WATER TABLE;

AMAZON BASIN; BRAZIL; RIO NEGRO [SOUTH AMERICA];

EID: 80052965052     PISSN: 01682563     EISSN: 1573515X     Source Type: Journal    
DOI: 10.1007/s10533-010-9564-9     Document Type: Article

References (77)

1. Amblès A, Jambu P, Parlanti E, Joffre J, Riffe C (1994) Incorporation of natural monoacids from plant residues into an hydromorphic forest podzol. Eur J Soil Sci 45: 175-182.
2. Augris N, Balesdent J, Mariotti A, Derenne S, Largeau C (1998) Structure and origin of insoluble and non-hydrolyzable, aliphatic organic matter in a forest soil. Org Geochem 28: 119-124.
3. 27Al MAS and MQMAS NMR study. Geochim Cosmochim Acta 71: 3211-3222.
4. Bardy M, Fritsch E, Derenne S, Allard T, do Nascimento NR, Bueno GT (2008a) Micromorphology and spectroscopic characteristics of organic matter in waterlogged podzols of the upper Amazon basin. Geoderma 145: 222-230.
5. Bardy M, Derenne S, Fritsch E (2008b) Evolution of lipid abundance and molecular composition during the podzolisation of laterites in the upper Amazon basin. Biogeochemistry 92: 95-118.
6. Benedetti MF, Ranville JF, Ponthieu M, Paulo Pinheiro J (2002) Field-flow fractionation characterization and binding properties of particulate and colloidal organic matter from the Rio Amazon and Rio Negro. Org Geochem 33: 269-279.
7. Boom A, Sinninghe Damste JS, de Leeuw JW (2005) Cutan, a common aliphatic biopolymer in cuticles of drought-adapted plants. Org Geochem 36: 595-601.
8. Briand G (1995) Etude de la matière organique transferee des sols aux suspensions fluviales: application à de petits basin versants de la region de Manaus (Amazonie, Brésil). PhD thesis, University of Paris 6.
9. Buurman P, Jongmans AG (2005) Podzolisation and soil organic matter dynamics. Geoderma 125: 71-83.
10. Challinor JM (1995) Characterization of wood by pyrolysis derivatisation-gas chromatography/mass spectrometry. J Anal Appl Pyrolysis 35: 93-107.
11. Chauvel A, Lucas Y, Boulet R (1987) On the genesis of the soil mantle of the region of Manaus, Central Amazonia, Brazil. Experientia 43: 234-240.
12. Chefetz B, Chen Y, Clapp CE, Hatcher PG (2000) Characterization of organic matter in soils by thermochemolysis using tetramethylammonium hydroxide (TMAH). Soil Sci Soc Am J 64: 583-589.
13. Clifford DJ, Carson DM, McKinney DE, Bortiatynski JM, Hatcher PG (1995) A new rapid technique for the characterization of lignin in vascular plants: thermochemolysis with tetramethylammonium hydroxide (TMAH). Org Geochem 23: 169-175.
14. Cortes J, Schnitzer M (1979) Purines and pyrimidines in soils and humic substances. Soil Sci Soc Am J 43: 958-961.
15. del Rio JC, McKinney DE, Knicker H, Nanny MA, Minard RD, Hatcher PG (1998) Structural characterization of bio- and geo-macromolecules by off-line thermochemolysis with tetramethylammonium hydroxide. J Chromatogr A 823: 433-448.
16. Deniau I, Derenne S, Beaucaire C, Pitsch H, Largeau C (2004) Occurrence and nature of thermolabile compounds in the Boon Clay kerogen (Oligocene, underground Mol Laboratory, Belgium). Org Geochem 35: 91-107.
17. Derenne S, Largeau C (2001) A review of some important families of refractory macromolecules: composition, origin, and fate in soils and sediments. Soil Sci 166: 833-847.
18. Deshmukh AP, Simpson AJ, Hada CM, Hatcher P (2005) Insights into the structure of cutin and cutan from Agave americana leaf cuticle using HRMAS NMR spectroscopy. Org Geochem 36: 1072-1085.
19. do Nascimento NR, Bueno GT, Fritsch E, Herbillon AJ, Allard T, Melfi AJ, Astolfo R, Boucher H, Li Y (2004) Podzolization as a deferralitization process: a study of an acrisol-podzol sequence derived from Palaeozoic sandstones in the northern upper Amazon basin. Eur J Soil Sci 55: 523-538.
20. do Nascimento NR, Fritsch E, Bueno GT, Bardy M, Grimaldi C, Melfi AJ (2008) Podzolisation as a deferralitisation process: dynamics and chemistry of ground and surface waters in an acrisol-podzol sequence of the upper Amazon basin. Eur J Soil Sci 59: 911-924.
21. Eyrolle F, Benedetti MF, Benaim JY, Février D (1996) The distribution of colloidal and dissolved organic carbon, major elements, and trace elements in small tropical catchments. Geochim Cosmochim Acta 60: 3643-3656.
22. Fabbri D, Helleur R (1999) Characterization of the tetramethylammonium hydroxide thermochemolysis products of carbohydrates. J Anal Appl Pyrolysis 49: 277-293.
23. Fabbri D, Chiavari G, Galletti GC (1996) Characterization of soil humin by pyrolysis(/methylation)-gas chromatography/mass spectrometry: structural relationships with humic acids. J Anal Appl Pyrolysis 37: 161-172.
24. Filley TR, Nierop KGJ, Wang Y (2006) The contribution of polyhydroxyl aromatic compounds to tetramethylammonium hydroxide lignin-based proxies. Org Geochem 37: 711-727.
25. Frazier SW, Nowack KO, Goins KM, Cannon FS, Kaplan LA, Hatcher PG (2003) Characterization of organic matter from natural water using tetramethylammonium hydroxide thermochemolysis GC-MS. J Anal Appl Pyrolysis 70: 99-128.
26. Fritsch E, Montes-Lauar CR, Boulet R, Melfi AJ, Balan E, Magat P (2002) Lateritic and redoximorphic features in a faulted landscape near Manaus, Brazil. Eur J Soil Sci 53: 203-217.
27. Gallois N, Templier J, Derenne S (2007) Pyrolysis-gas chromatography-mass spectrometry of the 20 protein amino acids in the presence of TMAH. J Anal Appl Pyrolysis 80: 216-230.
28. Garcette-Lepecq A, Derenne S, Largeau C, Bouloubassi I, Saliot A (2001) Thermally assisted hydrolysis and methylation of kerogen-like organic matter in a recent sediment off the Danube delta (northwestern Black Sea). J Anal Appl Pyrolysis 61: 147-164.
29. 13C NMR spectroscopy, conventional pyrolysis and TMAH thermochemolysis. J Anal Appl Pyrolysis 67: 277-293.
30. Gobé V, Lemée L, Amblès A (2000) Structure elucidation of soil macromolecular lipids by preparative pyrolysis and thermochemolysis. Org Geochem 31: 409-419.
31. Guggenberger G, Zech W (1994) Composition and dynamics of dissolved carbohydrates and lignin-degradation products in two coniferous forests, N. E. Bavaria, Germany. Soil Biol Biochem 26: 19-27.
32. Haack SK, Garchow H, Odelson DA, Forney LJ, Klug MJ (1994) Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl Environ Microbiol 60: 2483-2493.
33. Hatcher PG, Minard RD (1995) Comment on the origin of benzenecarboxylic acids in pyrolysis methylation studies. Org Geochem 23: 991-994.
34. Hedges JI, Mann DC (1979) The characterization of plant tissues by their lignin oxidation products. Geochim Cosmochim Acta 43: 1803-1807.
35. Hedges JI, Parker PL (1976) Land-derived organic matter in surface sediments from the Gulf of Mexico. Geochim Cosmochim Acta 40: 1019-1029.
36. Hu WG, Mao J, Xing B, Schmidt-Rohr K (2000) Poly(methylene) crystallites in humic substances detected by nuclear magnetic resonance. Environ Sci Technol 34: 530-534.
37. Jambu P, Mouçawi J, Fustec E, Amblès A, Jacquesy R (1985) Inter-relation entre le pH et la nature des composés lipidiques du sol: étude comparée d'une rendzine et d'un sol lessivé glossique. Agrochimica 29: 186-198.
38. 13C nuclear magnetic resonance (DP/CP NMR) and the benzenepolycarboxylic acid (BPCA) method. Org Geochem 39: 1415-1426.
39. Knicker H, Hatcher PG (1997) Survival of protein in an organic-rich sediment: possible protection by encapsulation in organic matter. Naturwissenschaften 84: 231-234.
40. Kolattukudy PE (1980) Biopolyester membranes of plants: cutin and suberin. Science 208: 990-1000.
41. Kolattukudy PE, Croteau R, Buckner JS (1976) Chemistry and biochemistry of natural waxes. Elsevier Science, Amsterdam.
42. Laor Y, Avnimelech Y (2002) Fractionation of compost-derived dissolved organic matter by flocculation process. Org Geochem 33: 257-263.
43. Largeau C, Derenne S, Casadevall E, Kadouri E, Sellier N (1986) Pyrolysis of immature torbanite and the resistant biopolymer (PRB A) isolates from extant alga Botryococcus braunii. Mechanism of formation and structure of torbanite. In: Leythaeuser D, Rullkötter J (eds) Advances in organic geochemistry. Pergamon Press, Oxford, pp 1023-1032.
44. Lehtonen T, Peuravuori J, Pihlaja K (2000) Degradation of TMAH treated aquatic humic matter at different temperatures. J Anal Appl Pyrolysis 55: 151-160.
45. Lucas Y, Boulet R, Chauvel A, Veillon L (1987) Systèmes sols ferralitiques-podzols en région amazonienne. In: Righi D, Chauvel A (eds) Podzols et podzolization. AFES-INRA, Paris, pp 53-65.
46. Mannino A, Harvey HR (2000) Terrigenous dissolved organic matter along an estuarine gradient and its flux to the coastal ocean. Org Geochem 31: 1611-1625.
47. Martin F, del Rio JC, González-Vila FJ, Verdejo T (1995) Pyrolysis derivatization of humic substances 2. Pyrolysis of soil humic acids in the presence of tetramethylammonium hydroxide. J Anal Appl Pyrolysis 31: 75-83.
48. McClain ME, Richey JE, Brandes JA (1997) Dissolved organic matter and terrestrial-lotic linkages in the central Amazon basin of Brazil. Global Biogeochem Cycles 11: 295-311.
49. McKinney DE, Bortiatynski JM, Carson DM, Clifford DJ, de Leeuw JW, Hatcher PG (1996) Tetramethylammonium hydroxide (TMAH) thermochemolysis of the aliphatic biopolymer cutan: insights into the chemical structure. Org Geochem 24: 641-650.
50. Metz G, Wu XL, Smith SO (1994) Ramped-amplitude cross polarization in magic-angle-spinning NMR. J Magn Reson A 110: 219-227.
51. Naafs DFW, van Bergen PF, Boogert SJ, de Leeuw JW (2004) Solvent-extractable lipids in an acid andic forest soil; variations with depth and season. Soil Biol Biochem 36: 297-308.
52. Nierop KGJ (2001) Temporal and vertical organic matter differentiation along a vegetation succession as revealed by pyrolysis and thermally assisted hydrolysis and methylation. J Anal Appl Pyrolysis 61: 111-132.
53. Nierop KGJ, Buurman P (1998) Composition of soil organic matter and its water-soluble fraction under young vegetation on drift sand, central Netherlands. Eur J Soil Sci 49: 605-615.
54. Nierop KGJ, Buurman P (2007) Thermally assisted hydrolysis and methylation of organic matter in two allophanic volcanic ash soils from the Azores Islands. In: Arnalds Ó, Óskarsson H, Bartoli F, Buurman P, Stoops G, García-Rodeja E (eds) Soils of volcanic regions in Europe. Springer, Berlin, pp 411-422.
55. Nierop KGJ, Pulleman MM, Marinissen JCY (2001) Management induced organic matter differentiation in grassland and arable soil: a study using pyrolysis techniques. Soil Biol Biochem 33: 755-764.
56. Nierop KGJ, Preston CM, Kaal J (2005a) Thermally assisted hydrolysis and methylation of purified tannins from plants. Anal Chem 77: 5604-5614.
57. Nierop KGJ, Naafs DFW, van Bergen PF (2005b) Origin, occurrence and fate of extractable lipids in Dutch coastal dune soils along a pH gradient. Org Geochem 36: 555-566.
58. Nip M, Tegelaar EW, Brinkhuis H, de Leeuw JW, Schenck PA, Holloway PJ (1985) Analysis of modern and fossil plant cuticles by Curie point Py-GC and Curie point Py-GC-MS: recognition of a new, highly aliphatic and resistant biopolymer. Adv Org Geochem 10: 769-778.
59. Pastorova I, Botto RE, Arisz PW, Boon JJ (1994) Cellulose char structure: a combines analytical Py-GC-MS, FTIR and NMR study. Carbohydr Res 262: 27-47.
60. Piccolo A, Nardi S, Concheri G (1996) Macromolecular changes of humic substances induced by interaction with organic acids. Eur J Soil Sci 47: 319-328.
61. Quénéa K, Derenne S, Largeau C, Rumpel C, Mariotti A (2004) Variation in lipid relative abundance and composition among different particle size fractions of a forest soil. Org Geochem 35: 1355-1370.
62. Quénéa K, Derenne S, Largeau C, Rumpel C, Mariotti A (2005) Spectroscopic and pyrolytic features and abundance of the macromolecular refractory fraction in a sandy acid forest soil (Landes de Gascogne, France). Org Geochem 36: 349-362.
63. Righi D, Bravard S, Chauvel A, Ranger J, Robert M (1990) In situ study of soil processes in an oxisol-spodosol sequence of Amazonia (Brazil). Soil Sci 150: 438-445.
64. Rodriguez-Zuniga UF, Pereira Milori DMB, Da Silva WTL, Martin-Neto L, Oliveira LC, Rocha JC (2008) Changes in optical properties caused by UV-irradiation of aquatic humic substances from the Amazon River basin: seasonal variability evaluation. Environ Sci Technol 42: 1948-1953.
65. Saiz-Jimenez C (1995a) The origin of alkylbenzenes and thiophenes in pyrolysates of geochemical samples. Org Geochem 23: 81-85.
66. Saiz-Jimenez C (1995b) Reactivity of the aliphatic humic moiety in analytical pyrolysis. Org Geochem 23: 955-961.
67. Saiz-Jimenez C, Hermosin B (1999) Thermally assisted hydrolysis and methylation of dissolved organic matter in dripping waters from the Altamira Cave. J Anal Appl Pyrol 49: 337-347.
68. Saiz-Jimenez C, Hermosin B, Trubetskaya OE, Reznikova OI, Afanas'eva GV, Trubetskoj OA (2006) Thermochemolysis of genetically different soil humic acids and their fractions obtained by tandem size exclusion chromatography-polyacrylamide gel electrophoresis. Geoderma 131: 22-32.
69. Schwarzinger C, Tanczos I, Schmidt H (2002) Levoglucosan, cellobiose and their acetates as model compounds for the thermally assisted hydrolysis and methylation of cellulose and cellulose acetate. J Anal Appl Pyrol 62: 179-196.
70. 13C nuclear magnetic resonance spectroscopy. Aust J Soil Res 30: 667-681.
71. Tegelaar EW, Hollman G, van der Vegt P, de Leeuw JW, Holloway PJ (1995) Chemical characterization of the periderm tissue of some angiosperm species: recognition of an insoluble, non-hydrolyzable, aliphatic biomacromolecule (suberan). Org Geochem 23: 239-250.
72. 13C CP/MAS NMR approach. Org Geochem 36: 1418-1442.
73. van Bergen PF, Bull ID, Poulton PR, Evershed RP (1997) Organic geochemical studies of soils from the Rothamsted classical experiments-I. Total lipid extracts, solvent insoluble residues and humic acids from Broadbalk Wilderness. Org Geochem 26: 117-135.
74. van Heemst JDH, del Rio JC, Hatcher PG, de Leeuw JW (2000) Characterization of estuarine and fluvial dissolved organic matter by thermochemolysis using tetramethylammonium hydroxide. Acta Hydrochim Hydrobiol 28: 69-76.
75. Zang X, van Heemst JDH, Dria KJ, Hatcher PG (2000) Encapsulation of protein in humic acid from a histosol as an explanation for the occurrence of organic nitrogen in soil and sediment. Org Geochem 31: 679-695.
76. Zegouagh Y, Derenne S, Largeau C, Saliot A (1996) Organic matter sources and early diagenetic alterations in Arctic surface sediments (Lena River delta and Laptev Sea, Eastern Siberia)-I. Analysis of the carboxylic acids released via sequential treatments. Org Geochem 24: 841-857.
77. Zsolnay A (1996) Dissolved humus in soil waters. In: Piccolo A (ed) Humic substances in terrestrial ecosystems. Elsevier, Amsterdam, pp 225-264.