-
2
-
-
27644596457
-
Predicting in vivo drug interactions from in vitro drug discovery data
-
L.C. Wienkers, and T.G. Heath Predicting in vivo drug interactions from in vitro drug discovery data Nat. Rev. Drug Discov. 4 2005 825 833
-
(2005)
Nat. Rev. Drug Discov.
, vol.4
, pp. 825-833
-
-
Wienkers, L.C.1
Heath, T.G.2
-
3
-
-
27444434892
-
MetaSite: Understanding metabolism in human cytochromes from the perspective of the chemist
-
G. Cruciani, E. Carosati, B.B. De, K. Ethirajulu, C. Mackie, T. Howe, and R. Vianello MetaSite: understanding metabolism in human cytochromes from the perspective of the chemist J. Med. Chem. 48 2005 6970 6979
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6970-6979
-
-
Cruciani, G.1
Carosati, E.2
De, B.B.3
Ethirajulu, K.4
MacKie, C.5
Howe, T.6
Vianello, R.7
-
4
-
-
17444411955
-
Cytochrome p450 in silico: An integrative modeling approach
-
G.C. de, N.P. Vermeulen, and K.A. Feenstra Cytochrome p450 in silico: an integrative modeling approach J. Med. Chem. 48 2005 2725 2755
-
(2005)
J. Med. Chem.
, vol.48
, pp. 2725-2755
-
-
De, G.C.1
Vermeulen, N.P.2
Feenstra, K.A.3
-
5
-
-
65549171233
-
CypScore: Quantitative prediction of reactivity toward cytochromes P450 based on semiempirical molecular orbital theory
-
M. Hennemann, A. Friedl, M. Lobell, J. Keldenich, A. Hillisch, T. Clark, and A.H. Goller CypScore: quantitative prediction of reactivity toward cytochromes P450 based on semiempirical molecular orbital theory ChemMedChem 4 2009 657 669
-
(2009)
ChemMedChem
, vol.4
, pp. 657-669
-
-
Hennemann, M.1
Friedl, A.2
Lobell, M.3
Keldenich, J.4
Hillisch, A.5
Clark, T.6
Goller, A.H.7
-
6
-
-
57349106476
-
Impact of plasticity and flexibility on docking results for cytochrome P450 2D6: A combined approach of molecular dynamics and ligand docking
-
J. Hritz, R.A. de, and C. Oostenbrink Impact of plasticity and flexibility on docking results for cytochrome P450 2D6: a combined approach of molecular dynamics and ligand docking J. Med. Chem. 51 2008 7469 7477
-
(2008)
J. Med. Chem.
, vol.51
, pp. 7469-7477
-
-
Hritz, J.1
De, R.A.2
Oostenbrink, C.3
-
7
-
-
45749087429
-
Regioselectivity prediction of CYP1A2-mediated phase i metabolism
-
J. Jung, N.D. Kim, S.Y. Kim, I. Choi, K.H. Cho, W.S. Oh, D.N. Kim, and K.T. No Regioselectivity prediction of CYP1A2-mediated phase I metabolism J. Chem. Inf. Model. 48 2008 1074 1080
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1074-1080
-
-
Jung, J.1
Kim, N.D.2
Kim, S.Y.3
Choi, I.4
Cho, K.H.5
Oh, W.S.6
Kim, D.N.7
No, K.T.8
-
8
-
-
68149168645
-
EaMEAD: Activation energy prediction of cytochrome P450 mediated metabolism with effective atomic descriptors
-
D.N. Kim, K.H. Cho, W.S. Oh, C.J. Lee, S.K. Lee, J. Jung, and K.T. No EaMEAD: activation energy prediction of cytochrome P450 mediated metabolism with effective atomic descriptors J. Chem. Inf. Model. 49 2009 1643 1654
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1643-1654
-
-
Kim, D.N.1
Cho, K.H.2
Oh, W.S.3
Lee, C.J.4
Lee, S.K.5
Jung, J.6
No, K.T.7
-
9
-
-
0025150366
-
Theoretical-studies on cytochrome-P-450 mediated hydroxylation - A predictive model for hydrogen-atom abstractions
-
K.R. Korzekwa, J.P. Jones, and J.R. Gillette Theoretical-studies on cytochrome-P-450 mediated hydroxylation - A predictive model for hydrogen-atom abstractions J. Am. Chem. Soc. 112 1990 7042 7046
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 7042-7046
-
-
Korzekwa, K.R.1
Jones, J.P.2
Gillette, J.R.3
-
10
-
-
33750486521
-
Prediction of activation energies for hydrogen abstraction by cytochrome p450
-
L. Olsen, P. Rydberg, T.H. Rod, and U. Ryde Prediction of activation energies for hydrogen abstraction by cytochrome p450 J. Med. Chem. 49 2006 6489 6499
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6489-6499
-
-
Olsen, L.1
Rydberg, P.2
Rod, T.H.3
Ryde, U.4
-
12
-
-
0037431382
-
A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules
-
S.B. Singh, L.Q. Shen, M.J. Walker, and R.P. Sheridan A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules J. Med. Chem. 46 2003 1330 1336
-
(2003)
J. Med. Chem.
, vol.46
, pp. 1330-1336
-
-
Singh, S.B.1
Shen, L.Q.2
Walker, M.J.3
Sheridan, R.P.4
-
13
-
-
0141611170
-
Prediction of drug metabolism: The case of cytochrome P450 2D6
-
N.P.E. Vermeulen Prediction of drug metabolism: the case of cytochrome P450 2D6 Curr. Top. Med. Chem. 3 2003 1227 1239
-
(2003)
Curr. Top. Med. Chem.
, vol.3
, pp. 1227-1239
-
-
Vermeulen, N.P.E.1
-
14
-
-
0038440502
-
Predicting drug metabolism: A site of metabolism prediction tool applied to the cytochrome P4502C9
-
I. Zamora, L. Afzelius, and G. Cruciani Predicting drug metabolism: a site of metabolism prediction tool applied to the cytochrome P4502C9 J. Med. Chem. 46 2003 2313 2324
-
(2003)
J. Med. Chem.
, vol.46
, pp. 2313-2324
-
-
Zamora, I.1
Afzelius, L.2
Cruciani, G.3
-
15
-
-
77953322016
-
Site of metabolism prediction on cytochrome P450 2C9: A knowledge-based docking approach
-
A. Tarcsay, R. Kiss, and G.M. Keseru Site of metabolism prediction on cytochrome P450 2C9: a knowledge-based docking approach J. Comput. Aid. Mol. Des. 24 2010 399 408
-
(2010)
J. Comput. Aid. Mol. Des.
, vol.24
, pp. 399-408
-
-
Tarcsay, A.1
Kiss, R.2
Keseru, G.M.3
-
16
-
-
39749093726
-
Prediction of metabolism by cytochrome P450 2C9: Alignment and docking studies of a validated database of substrates
-
M.J. Sykes, R.A. McKinnon, and J.O. Miners Prediction of metabolism by cytochrome P450 2C9: alignment and docking studies of a validated database of substrates J. Med. Chem. 51 2008 780 791
-
(2008)
J. Med. Chem.
, vol.51
, pp. 780-791
-
-
Sykes, M.J.1
McKinnon, R.A.2
Miners, J.O.3
-
17
-
-
61949197836
-
Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands
-
P. Vasanthanathan, J. Hritz, O. Taboureau, L. Olsen, F.S. Jorgensen, N.P. Vermeulen, and C. Oostenbrink Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands J. Chem. Inf. Model. 49 2009 43 52
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 43-52
-
-
Vasanthanathan, P.1
Hritz, J.2
Taboureau, O.3
Olsen, L.4
Jorgensen, F.S.5
Vermeulen, N.P.6
Oostenbrink, C.7
-
18
-
-
53249095707
-
Considerations and recent advances in QSAR models for cytochrome P450-mediated drug metabolism prediction
-
H. Li, J. Sun, X. Fan, X. Sui, L. Zhang, Y. Wang, and Z. He Considerations and recent advances in QSAR models for cytochrome P450-mediated drug metabolism prediction J. Comput. Aid. Mol. Des. 22 2008 843 855
-
(2008)
J. Comput. Aid. Mol. Des.
, vol.22
, pp. 843-855
-
-
Li, H.1
Sun, J.2
Fan, X.3
Sui, X.4
Zhang, L.5
Wang, Y.6
He, Z.7
-
19
-
-
33847035148
-
State-of-the-art tools for computational site of metabolism predictions: Comparative analysis, mechanistical insights, and future applications
-
L. Afzelius, C.H. Arnby, A. Broo, L. Carlsson, C. Isaksson, U. Jurva, B. Kjellander, K. Kolmodin, K. Nilsson, F. Raubacher, and L. Weidolf State-of-the-art tools for computational site of metabolism predictions: comparative analysis, mechanistical insights, and future applications Drug Metab. Rev. 39 2007 61 86
-
(2007)
Drug Metab. Rev.
, vol.39
, pp. 61-86
-
-
Afzelius, L.1
Arnby, C.H.2
Broo, A.3
Carlsson, L.4
Isaksson, C.5
Jurva, U.6
Kjellander, B.7
Kolmodin, K.8
Nilsson, K.9
Raubacher, F.10
Weidolf, L.11
-
20
-
-
33745741280
-
Computational approaches for predicting CYP-related metabolism properties in the screening of new drugs
-
P. Crivori, and I. Poggesi Computational approaches for predicting CYP-related metabolism properties in the screening of new drugs Eur. J. Med. Chem. 41 2006 795 808
-
(2006)
Eur. J. Med. Chem.
, vol.41
, pp. 795-808
-
-
Crivori, P.1
Poggesi, I.2
-
21
-
-
45949107967
-
Computational prediction of drug binding and rationalisation of selectivity towards cytochromes P450
-
E. Stjernschantz, N.P. Vermeulen, and C. Oostenbrink Computational prediction of drug binding and rationalisation of selectivity towards cytochromes P450 Expert Opin. Drug Metab. Toxicol. 4 2008 513 527
-
(2008)
Expert Opin. Drug Metab. Toxicol.
, vol.4
, pp. 513-527
-
-
Stjernschantz, E.1
Vermeulen, N.P.2
Oostenbrink, C.3
-
22
-
-
84888464415
-
Computational models for cytochrome P450: A predictive electronic model for aromatic oxidation and hydrogen atom abstraction
-
J.P. Jones, M. Mysinger, and K.R. Korzekwa Computational models for cytochrome P450: a predictive electronic model for aromatic oxidation and hydrogen atom abstraction FASEB J. 17 2003 A608
-
(2003)
FASEB J.
, vol.17
, pp. 608
-
-
Jones, J.P.1
Mysinger, M.2
Korzekwa, K.R.3
-
23
-
-
58149166592
-
Prediction of activation energies for aromatic oxidation by cytochrome P450
-
P. Rydberg, U. Ryde, and L. Olsen Prediction of activation energies for aromatic oxidation by cytochrome P450 J. Phys. Chem. A 112 2008 13058 13065
-
(2008)
J. Phys. Chem. A
, vol.112
, pp. 13058-13065
-
-
Rydberg, P.1
Ryde, U.2
Olsen, L.3
-
24
-
-
58149157800
-
Sulfoxide, sulfur, and nitrogen oxidation and dealkylation by cytochrome P450
-
P. Rydberg, U. Ryde, and L. Olsen Sulfoxide, sulfur, and nitrogen oxidation and dealkylation by cytochrome P450 J. Chem. Theory Comput. 4 2008 1369 1377
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 1369-1377
-
-
Rydberg, P.1
Ryde, U.2
Olsen, L.3
-
25
-
-
42149138057
-
New combined model for the prediction of regioselectivity in cytochrome P450/3A4 mediated metabolism
-
W.S. Oh, D.N. Kim, J. Jung, K.H. Cho, and K.T. No New combined model for the prediction of regioselectivity in cytochrome P450/3A4 mediated metabolism J. Chem. Inf. Model. 48 2008 591 601
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 591-601
-
-
Oh, W.S.1
Kim, D.N.2
Jung, J.3
Cho, K.H.4
No, K.T.5
-
26
-
-
70350362083
-
Improvement of site of metabolism predictions for CYP3A4 by using discriminant analysis of compound preference of CYP3A4 X-Ray structural conformers and subsequent docking
-
P. Prusis, and L. Afzelius Improvement of site of metabolism predictions for CYP3A4 by using discriminant analysis of compound preference of CYP3A4 X-Ray structural conformers and subsequent docking QSAR Comb. Sci. 28 2009 865 868
-
(2009)
QSAR Comb. Sci.
, vol.28
, pp. 865-868
-
-
Prusis, P.1
Afzelius, L.2
-
27
-
-
65549103878
-
Site of metabolism prediction for six biotransformations mediated by cytochromes P450
-
M.Y. Zheng, X.M. Luo, Q.C. Shen, Y. Wang, Y. Du, W.L. Zhu, and H.L. Jiang Site of metabolism prediction for six biotransformations mediated by cytochromes P450 Bioinformatics 25 2009 1251 1258
-
(2009)
Bioinformatics
, vol.25
, pp. 1251-1258
-
-
Zheng, M.Y.1
Luo, X.M.2
Shen, Q.C.3
Wang, Y.4
Du, Y.5
Zhu, W.L.6
Jiang, H.L.7
-
28
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
G. Jones, P. Willett, R.C. Glen, A.R. Leach, and R. Taylor Development and validation of a genetic algorithm for flexible docking J. Mol. Biol. 267 1997 727 748
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
29
-
-
37049036628
-
Interactions of substrates at the surface of P450s can greatly enhance substrate potency
-
A. Hegde, D.C. Haines, M. Bondlela, B. Chen, N. Schaffer, D.R. Tomchick, M. Machius, H. Nguyen, P.K. Chowdhary, L. Stewart, C. Lopez, and J.A. Peterson Interactions of substrates at the surface of P450s can greatly enhance substrate potency Biochemistry 46 2007 14010 14017
-
(2007)
Biochemistry
, vol.46
, pp. 14010-14017
-
-
Hegde, A.1
Haines, D.C.2
Bondlela, M.3
Chen, B.4
Schaffer, N.5
Tomchick, D.R.6
MacHius, M.7
Nguyen, H.8
Chowdhary, P.K.9
Stewart, L.10
Lopez, C.11
Peterson, J.A.12
-
30
-
-
0031013972
-
The structure of the cytochrome p450BM-3 haem domain complexed with the fatty acid substrate, palmitoleic acid
-
H. Li, and T.L. Poulos The structure of the cytochrome p450BM-3 haem domain complexed with the fatty acid substrate, palmitoleic acid Nat. Struct. Biol. 4 1997 140 146
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 140-146
-
-
Li, H.1
Poulos, T.L.2
-
31
-
-
0037145075
-
Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: High resolution structure and functional properties
-
S.Y. Park, K. Yamane, S. Adachi, Y. Shiro, K.E. Weiss, S.A. Maves, and S.G. Sligar Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties J. Inorg. Biochem. 91 2002 491 501
-
(2002)
J. Inorg. Biochem.
, vol.91
, pp. 491-501
-
-
Park, S.Y.1
Yamane, K.2
Adachi, S.3
Shiro, Y.4
Weiss, K.E.5
Maves, S.A.6
Sligar, S.G.7
-
32
-
-
0034613190
-
Crystal structure of a thermophilic cytochrome P450 from the archaeon Sulfolobus solfataricus
-
J.K. Yano, L.S. Koo, D.J. Schuller, H. Li, P.R. Ortiz de Montellano, and T.L. Poulos Crystal structure of a thermophilic cytochrome P450 from the archaeon Sulfolobus solfataricus J. Biol. Chem. 275 2000 31086 31092
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31086-31092
-
-
Yano, J.K.1
Koo, L.S.2
Schuller, D.J.3
Li, H.4
Ortiz De Montellano, P.R.5
Poulos, T.L.6
-
33
-
-
4644301430
-
The structure of human microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05-A resolution
-
J.K. Yano, M.R. Wester, G.A. Schoch, K.J. Griffin, C.D. Stout, and E.F. Johnson The structure of human microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05-A resolution J. Biol. Chem. 279 2004 38091 38094
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 38091-38094
-
-
Yano, J.K.1
Wester, M.R.2
Schoch, G.A.3
Griffin, K.J.4
Stout, C.D.5
Johnson, E.F.6
-
34
-
-
33748802003
-
Structural basis for ligand promiscuity in cytochrome P450 3A4
-
M. Ekroos, and T. Sjogren Structural basis for ligand promiscuity in cytochrome P450 3A4 Proc. Natl. Acad. Sci. USA. 103 2006 13682 13687
-
(2006)
Proc. Natl. Acad. Sci. USA.
, vol.103
, pp. 13682-13687
-
-
Ekroos, M.1
Sjogren, T.2
-
35
-
-
33646092472
-
Crystal structure of human cytochrome P450 2D6
-
P. Rowland, F.E. Blaney, M.G. Smyth, J.J. Jones, V.R. Leydon, A.K. Oxbrow, C.J. Lewis, M.G. Tennant, S. Modi, D.S. Eggleston, R.J. Chenery, and A.M. Bridges Crystal structure of human cytochrome P450 2D6 J. Biol. Chem. 281 2006 7614 7622
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 7614-7622
-
-
Rowland, P.1
Blaney, F.E.2
Smyth, M.G.3
Jones, J.J.4
Leydon, V.R.5
Oxbrow, A.K.6
Lewis, C.J.7
Tennant, M.G.8
Modi, S.9
Eggleston, D.S.10
Chenery, R.J.11
Bridges, A.M.12
-
36
-
-
84986437005
-
Macromodel - An integrated software system for modeling organic and bioorganic molecules using molecular mechanics
-
F. Mohamadi, N.G.J. Richards, W.C. Guida, R. Liskamp, M. Lipton, C. Caufield, G. Chang, T. Hendrickson, and W.C. Still Macromodel - An integrated software system for modeling organic and bioorganic molecules using molecular mechanics J. Comput. Chem. 11 1990 440 467
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 440-467
-
-
Mohamadi, F.1
Richards, N.G.J.2
Guida, W.C.3
Liskamp, R.4
Lipton, M.5
Caufield, C.6
Chang, G.7
Hendrickson, T.8
Still, W.C.9
-
37
-
-
76149120388
-
Software news and update AutoDock Vina: Improving the speed and accuracy of docking with a New scoring function, Efficient optimization, and multithreading
-
O. Trott, and A.J. Olson Software news and update AutoDock Vina: improving the speed and accuracy of docking with a New scoring function, Efficient optimization, and multithreading J. Comput. Chem. 31 2010 455 461
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
38
-
-
4143143372
-
The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-A resolution
-
M.R. Wester, J.K. Yano, G.A. Schoch, C. Yang, K.J. Griffin, C.D. Stout, and E.F. Johnson The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-A resolution J. Biol. Chem. 279 2004 35630 35637
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 35630-35637
-
-
Wester, M.R.1
Yano, J.K.2
Schoch, G.A.3
Yang, C.4
Griffin, K.J.5
Stout, C.D.6
Johnson, E.F.7
-
39
-
-
0026320866
-
The energy landscapes and motions of proteins
-
H. Frauenfelder, S.G. Sligar, and P.G. Wolynes The energy landscapes and motions of proteins Science 254 1991 1598 1603
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
40
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
C.J. Tsai, S. Kumar, B. Ma, and R. Nussinov Folding funnels, binding funnels, and protein function Protein Sci. 8 1999 1181 1190
-
(1999)
Protein Sci.
, vol.8
, pp. 1181-1190
-
-
Tsai, C.J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
42
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed genes
-
L.J. Heyer, S. Kruglyak, and S. Yooseph Exploring expression data: identification and analysis of coexpressed genes Genome Res. 9 1999 1106 1115
-
(1999)
Genome Res.
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
Kruglyak, S.2
Yooseph, S.3
-
43
-
-
0001858251
-
Application of a theory of enzyme specificity to protein synthesis
-
D.E. Koshland Application of a theory of enzyme specificity to protein synthesis Proc. Natl. Acad. Sci. USA. 44 1958 98 104
-
(1958)
Proc. Natl. Acad. Sci. USA.
, vol.44
, pp. 98-104
-
-
Koshland, D.E.1
-
44
-
-
0037125501
-
Studying enzyme binding specificity in acetylcholinesterase using a combined molecular dynamics and multiple docking approach
-
J. Kua, Y. Zhang, and J.A. McCammon Studying enzyme binding specificity in acetylcholinesterase using a combined molecular dynamics and multiple docking approach J. Am. Chem. Soc. 124 2002 8260 8267
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 8260-8267
-
-
Kua, J.1
Zhang, Y.2
McCammon, J.A.3
-
45
-
-
0038460858
-
Information decay in molecular docking screens against holo, apo, and modeled conformations of enzymes
-
S.L. McGovern, and B.K. Shoichet Information decay in molecular docking screens against holo, apo, and modeled conformations of enzymes J. Med. Chem. 46 2003 2895 2907
-
(2003)
J. Med. Chem.
, vol.46
, pp. 2895-2907
-
-
McGovern, S.L.1
Shoichet, B.K.2
-
46
-
-
0032718788
-
The sensitivity of the results of molecular docking to induced fit effects: Application to thrombin, thermolysin and neuraminidase
-
C.W. Murray, C.A. Baxter, and A.D. Frenkel The sensitivity of the results of molecular docking to induced fit effects: application to thrombin, thermolysin and neuraminidase J. Comput. Aided Mol. Des 13 1999 547 562
-
(1999)
J. Comput. Aided Mol. des
, vol.13
, pp. 547-562
-
-
Murray, C.W.1
Baxter, C.A.2
Frenkel, A.D.3
-
47
-
-
0032698681
-
Two-stage method for protein-ligand docking
-
D. Hoffmann, B. Kramer, T. Washio, T. Steinmetzer, M. Rarey, and T. Lengauer Two-stage method for protein-ligand docking J. Med. Chem. 42 1999 4422 4433
-
(1999)
J. Med. Chem.
, vol.42
, pp. 4422-4433
-
-
Hoffmann, D.1
Kramer, B.2
Washio, T.3
Steinmetzer, T.4
Rarey, M.5
Lengauer, T.6
-
48
-
-
77953932263
-
SMARTCyp: A 2D method for prediction of cytochrome P450-Mediated drug metabolism
-
P. Rydberg, D.E. Gloriam, J. Zaretzki, C. Breneman, and L. Olsen SMARTCyp: a 2D method for prediction of cytochrome P450-Mediated drug metabolism ACS Med. Chem. Lett. 1 2010 96 100
-
(2010)
ACS Med. Chem. Lett.
, vol.1
, pp. 96-100
-
-
Rydberg, P.1
Gloriam, D.E.2
Zaretzki, J.3
Breneman, C.4
Olsen, L.5
-
49
-
-
37249091134
-
Computation of octanol-water partition coefficients by guiding an additive model with knowledge
-
T. Cheng, Y. Zhao, X. Li, F. Lin, Y. Xu, X. Zhang, Y. Li, R. Wang, and L. Lai Computation of octanol-water partition coefficients by guiding an additive model with knowledge J. Chem. Inf. Model. 47 2007 2140 2148
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 2140-2148
-
-
Cheng, T.1
Zhao, Y.2
Li, X.3
Lin, F.4
Xu, Y.5
Zhang, X.6
Li, Y.7
Wang, R.8
Lai, L.9
-
50
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
G.L. Warren, C.W. Andrews, A.M. Capelli, B. Clarke, J. LaLonde, M.H. Lambert, M. Lindvall, N. Nevins, S.F. Semus, S. Senger, G. Tedesco, I.D. Wall, J.M. Woolven, C.E. Peishoff, and M.S. Head A critical assessment of docking programs and scoring functions J. Med. Chem. 49 2006 5912 5931
-
(2006)
J. Med. Chem.
, vol.49
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, C.W.2
Capelli, A.M.3
Clarke, B.4
Lalonde, J.5
Lambert, M.H.6
Lindvall, M.7
Nevins, N.8
Semus, S.F.9
Senger, S.10
Tedesco, G.11
Wall, I.D.12
Woolven, J.M.13
Peishoff, C.E.14
Head, M.S.15
-
51
-
-
0033614004
-
Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation
-
J.M. Word, S.C. Lovell, J.S. Richardson, and D.C. Richardson Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation J. Mol. Biol. 285 1999 1735 1747
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1735-1747
-
-
Word, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
53
-
-
23444454552
-
The amber biomolecular simulation programs
-
D.A. Case, T.E. Cheatham III, T. Darden, H. Gohlke, R. Luo, K.M. Merz Jr., A. Onufriev, C. Simmerling, B. Wang, and R.J. Woods The amber biomolecular simulation programs J. Comput. Chem. 26 2005 1668 1688
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham Iii, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, Jr.K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
54
-
-
0029633186
-
Amber, A package of computer-programs for applying molecular mechanics, normal-mode analysis, molecular-dynamics and free-energy calculations to simulate the structural and energetic properties of molecules
-
D.A. Pearlman, D.A. Case, J.W. Caldwell, W.S. Ross, T.E. Cheatham, S. Debolt, D. Ferguson, G. Seibel, and P. Kollman Amber, A package of computer-programs for applying molecular mechanics, normal-mode analysis, molecular-dynamics and free-energy calculations to simulate the structural and energetic properties of molecules Comput. Phys. Commun. 91 1995 1 41
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham, T.E.5
Debolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.9
-
55
-
-
0027159949
-
The molecular surface package
-
M.L. Connolly The molecular surface package J. Mol. Graph. 11 1993 139 141
-
(1993)
J. Mol. Graph.
, vol.11
, pp. 139-141
-
-
Connolly, M.L.1
|