Distances between dinucleotides in the human genome

Advances in Intelligent and Soft Computing

Volumn 93, Issue , 2011, Pages 205-211

  Bastos, Carlos A C ^a   Afreixo, Vera ^b   Pinho, Armando J ^a   Garcia, Sara P ^a   Rodrigues, João M O S ^a   Ferreira, Paulo J S G ^a  

^a UNIVERSITY OF AVEIRO   (Portugal)

^b UNIVERSITY OF AVEIRO   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDES; DISTANCE DISTRIBUTIONS; HUMAN GENOMES; KULLBACK LEIBLER DIVERGENCE; RANDOM SEQUENCE; RELATIVE ERRORS;

DNA SEQUENCES; GENES;

BIOINFORMATICS;

EID: 80052936474     PISSN: 18675662     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-642-19914-1_28     Document Type: Conference Paper

References (8)

1. Afreixo, V., Bastos, C.A.C., Pinho, A.J., Garcia, S.P., Ferreira, P.J.S.G.: Genome analysis with inter-nucleotide distances. Bioinformatics 25(23), 3064-3070 (2009)
2. Albrecht-Buehler, G.: Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions. Proceedings of the National Academy of Sciences of the United States of America 103(47), 17828-17833 (2006) (Pubitemid 44852245)
3. Albrecht-Buehler, G.: Inversions and inverted transpositions as the basis for an almost universal "format" of genome sequences. Genomics 90, 297-305 (2007) (Pubitemid 47176340)
4. Burge, C., Campbell, A.M., Karlin, S.: Over- and under-representation of short oligonucleotides. Proc. Nat. Acad. Sci. USA 89, 1358-1362 (1992)
5. Gentles, A.J., Karlin, S.: Genome-scale compositional comparisons in eukaryotes. Genome Research 11, 540-546 (2001) (Pubitemid 32331551)
6. Glass, J.L., Thompson, R.F., Khulan, B., Figueroa, M.E., Olivier, E.N., Oakley, E.J., Van Zant, G., Bouhassira, E.E., Melnick, A., Golden, A., Fazzari, M.J., Greally, J.M.: CG dinucleotide clustering is a species-specific property of the genome. Nucleic Acids Research 35(20), 6798-6807 (2007) (Pubitemid 350201800)
7. Qi, D., Jamie Cuticchia, A.: Compositional symmetries in complete genomes. Bioinformatics 17(6), 557-559 (2001) (Pubitemid 32600503)
8. Qi, J., Wang, B., Hao, B.-I.: Whole proteome prokaryote phylogeny without sequence alignment: A K-string composition approach. Journal of Molecular Evolution 58, 1-11 (2004) (Pubitemid 38120400)