Liquid extraction of low molecular mass organic acids and hydroxamate siderophores from boreal forest soil

Soil Biology and Biochemistry

Volumn 43, Issue 12, 2011, Pages 2417-2422

  Ali, Tara ^a   Bylund, Dan ^a   Essén, Sofia A ^a   Lundström, Ulla S ^a  

^a MID SWEDEN UNIVERSITY   (Sweden)

Author keywords

Extraction; Forest soil; Hydroxamate siderophores; Low molecular mass organic acids; Mycorrhiza

Indexed keywords

BOREAL FORESTS; EXTRACTION CONDITIONS; EXTRACTION TIME; EXTRACTION YIELD; FOREST SOILS; HIGHER YIELD; HYDROXAMATE; LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY; LIQUID EXTRACTION; LOW MOLECULAR MASS ORGANIC ACIDS; MYCORRHIZA; MYCORRHIZAL FUNGUS; NUTRIENT UPTAKE; POTASSIUM PHOSPHATE; SIDEROPHORES; SOIL EXTRACTS; SOIL SAMPLE; SOIL SOLUTIONS; ULTRA-SONICATION; VARIABLE PARAMETERS;

CENTRIFUGATION; CITRIC ACID; LIQUID CHROMATOGRAPHY; LIQUIDS; MASS SPECTROMETRY; METHANOL; MOLECULAR MASS; POTASSIUM; SOIL MOISTURE;

SOLVENT EXTRACTION;

BOREAL FOREST; CENTRIFUGE; EXTRACTION METHOD; FOREST SOIL; FUNGUS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METHANOL; MYCORRHIZA; NUTRIENT UPTAKE; ORGANIC ACID; PH; PHOSPHATE; PODZOL; SECRETION; SIDEROPHORE; SOIL HORIZON; SOIL MICROORGANISM; ULTRASONICS; WEATHERING;

FUNGI;

EID: 80052846419     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2011.08.015     Document Type: Article

References (40)

1. Ahonen-Jonnarth U., van Hees P.A.W., Lundstrom U.S., Finlay R.D. Organic acids produced by mycorrhizal Pinus sylvestris exposed to elevated aluminium and heavy metal concentrations. New Phytologist 2000, 146:557-567.
2. Bossier P., Verstraete W. Detection of siderophores in soil by a direct bioassay. Soil Biology & Biochemistry 1986, 18:481-486.
3. Bylund D., Norstrom S.H., Essen S.A., Lundstrom U.S. Analysis of low molecular mass organic acids in natural waters by ion exclusion chromatography tandem mass spectrometry. Journal of Chromatography A 2007, 1176:89-93.
4. Bylund D., Vestin J.L.K., Norstrom S.H., Lundstrom U.S. Soil solution and stream water chemistry in a forested catchment II: influence of organic matter. Geoderma 2008, 144:271-278.
5. Bylund D., Vestin J.L.K., Norstrom S.H., Mellander P.E., Lundstrom U.S. Soil solution and stream water chemistry in a forested catchment I: dynamics. Geoderma 2008, 144:256-270.
6. Cheah S.F., Kraemer S.M., Cervini-Silva J., Sposito G. Steady-state dissolution kinetics of goethite in the presence of desferrioxamine B and oxalate ligands: implications for the microbial acquisition of iron. Chemical Geology 2003, 198:63-75.
7. Chen M.C., Wang M.K., Chiu C.Y., Huang P.M., King H.B. Determination of low molecular weight dicarboxylic acids and organic functional groups in rhizosphere and bulk soils of Tsuga and Yushania in a temperate rain forest. Plant and Soil 2001, 231:37-44.
8. Courty P.E., Buee M., Diedhiou A.G., Frey-Klett P., Le Tacon F., Rineau F., Turpault M.P., Uroz S., Garbaye J. The role of ectomycorrhizal communities in forest ecosystem processes: new perspectives and emerging concepts. Soil Biology & Biochemistry 2010, 42:679-698.
9. Drever J.I., Stillings L.L. The role of organic acids in mineral weathering. Colloids and Surfaces A - Physicochemical and Engineering Aspects 1997, 120:167-181.
10. Eckhardt F.E.W. Solubilization, transport, and deposition of mineral cations by microorganisms - efficient rock weathering agents. The Chemistry of Weathering 1985, 161-173. Riedel, New York. J.I. Drever (Ed.).
11. Essén S.A., Bylund D., Holmstrom S.J.M., Moberg M., Lundstrom U.S. Quantification of hydroxamate siderophores in soil solutions of podzolic soil profiles in Sweden. Biometals 2006, 19:269-282.
12. Giesler R., Lundström U.S. Soil solution chemistry: effect of bulking soil samples. Soil Science Society of America Journal 1993, 57:1283-1288.
13. Gledhill M. Electrospray ionisation-mass spectrometry of hydroxamate siderophores. Analyst 2001, 126:1359-1362.
14. Haselwandter K., Winkelmann G. Ferricrocin - an ectomycorrhizal siderophore of Cenococcum geophilum. Biometals 2002, 15:73-77.
15. Holmstrom S.J.M., Lundstrom U.S., Finlay R.D., van Hees P.A.W. Siderophores in forest soil solution. Biogeochemistry 2004, 71:247-258.
16. Jalal M.A.F., Mocharla R., van der Helm D. Separation of ferrichromes and other hydroxamate siderophores of fungal origin by reversed-phase chromatography. Journal of Chromatography A 1984, 301:247-252.
17. Jones D.L., Dennis P.G., Owen A.G., van Hees P.A.W. Organic acid behavior in soils - misconceptions and knowledge gaps. Plant and Soil 2003, 248:31-41.
18. Jones D.L., Edwards A.C. Influence of sorption on the biological utilization of two simple carbon substrates. Soil Biology & Biochemistry 1998, 30:1895-1902.
19. Konetschny-Rapp S., Huschka H.G., Winkelmann G., Jung G. High-performance liquid chromatography of siderophores from fungi. Biology of Metals 1988, 1:9-17.
20. Mawji E., Gledhill M., Milton J.A., Tarran G.A., Ussher S., Thompson A., Wolff G.A., Worsfold P.J., Achterberg E.P. Hydroxamate siderophores: occurrence and importance in the Atlantic ocean. Environmental Science & Technology 2008, 42:8675-8680.
21. McCormack P., Worsfold P.J., Gledhill M. Separation and detection of siderophores produced by marine bacterioplankton using high-performance liquid chromatography with electrospray ionization mass spectrometry. Analytical Chemistry 2003, 75:2647-2652.
22. Moberg M., Holmstrom S.J.M., Lundstrom U.S., Markides K.E. Novel approach to the determination of structurally similar hydroxamate siderophores by column-switching capillary liquid chromatography coupled to mass spectrometry. Journal of Chromatography A 2003, 1020:91-97.
23. Neilands J.B. Siderophores - structure and function of microbial iron transport compounds. Journal of Biological Chemistry 1995, 270:26723-26726.
24. Pohlman A.A., McColl J.G. Soluble organics from forest litter and their role in metal dissolution. Soil Science Society of America Journal 1988, 52:265-271.
25. Powell P.E., Cline G.R., Reid C.P.P., Szaniszlo P.J. Occurrence of hydroxamate siderophore iron chelators in soils. Nature 1980, 287:833-834.
26. Reichard P.U., Kretzschmar R., Kraemer S.M. Dissolution mechanisms of goethite in the presence of siderophores and organic acids. Geochimica Et Cosmochimica Acta 2007, 71:5635-5650.
27. Rosling A., Lindahl B.D., Taylor A.F.S., Finlay R.D. Mycelial growth and substrate acidification of ectomycorrhizal fungi in response to different minerals. FEMS Microbiology Ecology 2004, 47:31-37.
28. Schwyn B., Neilands J.B. Universal chemical-assay for the detection and determination of siderophores. Analytical Biochemistry 1987, 160:47-56.
29. Smid E.J., Faijes M., Mars A.E. Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum. Microbial Cell Factories 2007, 6.
30. Strobel B.W. Influence of vegetation on low-molecular-weight carboxylic acids in soil solution - a review. Geoderma 2001, 99:169-198.
31. Tani M., Higashi T. Vertical distribution of low molecular weight aliphatic carboxylic acids in some forest soils of Japan. European Journal of Soil Science 1999, 50:217-226.
32. van Dam J.C., Eman M.R., Frank J., Lange H.C., van Dedem G.W.K., Heijnen S.J. Analysis of glycolytic intermediates in Saccharomyces cerevisiae using anion exchange chromatography and electrospray ionization with tandem mass spectrometric detection. Analytica Chimica Acta 2002, 460:209-218.
33. van Hees P.A.W., Jones D.L., Godbold D.L. Biodegradation of low molecular weight organic acids in coniferous forest podzolic soils. Soil Biology & Biochemistry 2002, 34:1261-1272.
34. van Hees P.A.W., Lundstrom U.S., Giesler R. Low molecular weight organic acids and their Al-complexes in soil solution - composition, distribution and seasonal variation in three podzolized soils. Geoderma 2000, 94:173-200.
35. van Hees P.A.W., Vinogradoff S.I., Edwards A.C., Godbold D.L., Jones D.L. Low molecular weight organic acid adsorption in forest soils: effects on soil solution concentrations and biodegradation rates. Soil Biology & Biochemistry 2003, 35:1015-1026.
36. van Scholl L., Hoffland E., van Breemen N. Organic anion exudation by ectomycorrhizal fungi and Pinus sylvestris in response to nutrient deficiencies. New Phytologist 2006, 170:153-163.
37. Wang X.X., Li Q.M., Ding J.H., Luo M.B., Zhang T.L., Zhou Y.Y. An improved method for the extraction of low molecular weight organic acids in variable charge soils. Analytical Sciences 2007, 23:539-543.
38. Watteau F., Berthelin J. Microbial dissolution of iron and aluminum from soil minerals - efficiency and specificity of hydroxamate siderophores compared to aliphatic-acids. European Journal of Soil Biology 1994, 30:1-9.
39. Winkelmann G. Ecology of siderophores with special reference to the fungi. Biometals 2007, 20:379-392.
40. Zabowski D., Ugolini F.C. Lysimeter and centrifuge soil solutions - seasonal differences between methods. Soil Science Society of America Journal 1990, 54:1130-1135.