Effectiveness of combination of Mini-and Microsatellite loci to sub-type Mycobacterium avium subsp. paratuberculosis Italian type C isolates

BMC Veterinary Research

Volumn 7, Issue , 2011, Pages

  Ricchi, Matteo ^a   Barbieri, Gianluca ^a   Taddei, Roberta ^a   Belletti, Gian L ^a   Carra, Elena ^a   Cammi, Giuliana ^a   Garbarino, Chiara A ^a   Arrigoni, Norma ^a  

^a ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLA LOMBARDIA E DELL EMILIA ROMAGNA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

BOS; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS;

BACTERIAL DNA; MICROSATELLITE DNA;

ALLELE; ANIMAL; ANIMAL DISEASE; ARTICLE; CATTLE; CATTLE DISEASE; CHEMISTRY; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; ITALY; MICROBIOLOGY; MYCOBACTERIUM PARATUBERCULOSIS; PARATUBERCULOSIS; POLYMERASE CHAIN REACTION; VARIABLE NUMBER OF TANDEM REPEAT;

ALLELES; ANIMALS; CATTLE; CATTLE DISEASES; DNA, BACTERIAL; ITALY; MICROSATELLITE REPEATS; MINISATELLITE REPEATS; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; PARATUBERCULOSIS; POLYMERASE CHAIN REACTION;

EID: 80052840048     PISSN: None     EISSN: 17466148     Source Type: Journal    
DOI: 10.1186/1746-6148-7-54     Document Type: Article

References (27)

1. Stevenson K, Alvarez J, Bakker D, Biet F, de Juan L, Denham S, Dimareli Z, Dohmann K, Gerlach GF, Heron I, Kopecna M, May L, Pavlik I, Sharp JM, Thibault VC, Willemsen P, Zadoks RN, Greig A. Occurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminants. BMC Microbiol 2009, 9:212. 10.1186/1471-2180-9-212, 2765967, 19811631.
2. Ott SL, Wells SJ, Wagner BA. Herd-level economic losses associated with Johne's disease on US dairy operations. Prev Vet Med 1999, 40:179-192. 10.1016/S0167-5877(99)00037-9, 10423773.
3. Abubakar I, Myhill D, Aliyu SH, Hunter PR. Detection of Mycobacterium avium subspecies paratuberculosis from patients with Crohn's disease using nucleic acid-based techniques: a systematic review and meta-analysis. Inflamm Bowel Dis 2008, 14:401-410. 10.1002/ibd.20276, 17886288.
4. Motiwala AS, Li L, Kapur V, Sreevatsan S. Current understanding of the genetic diversity of Mycobacterium avium subsp. paratuberculosis. Microbes Infect 2006, 8:1406-1418. 10.1016/j.micinf.2005.12.003, 16697677.
5. Ramel C. Mini-and microsatellites. Environ Health Perspect 1997, 105(Suppl 4):781-9. 10.1289/ehp.97105s4781, 1470042, 9255562.
6. Bull TJ, Sidi-Boumedine K, McMinn EJ, Stevenson K, Pickup R, Hermon-Taylor J. Mycobacterial interspersed repetitive units (MIRU) differentiate Mycobacterium avium subspecies paratuberculosis from other species of the Mycobacterium avium complex. Mol Cell Probes 2003, 17:157-164. 10.1016/S0890-8508(03)00047-1, 12944117.
7. Amonsin A, Li LL, Zhang Q, Bannantine JP, Motiwala AS, Sreevatsan S, Kapur V. Multilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strains. J Clin Microbiol 2004, 42:1694-1702. 10.1128/JCM.42.4.1694-1702.2004, 387571, 15071027.
8. Overduin P, Schouls L, Roholl P, van der Zanden A, Mahmmod N, Herrewegh A, van Soolingen D. Use of multilocus variable-number tandem-repeat analysis for typing Mycobacterium avium subsp. paratuberculosis. J Clin Microbiol 2004, 42:5022-5028. 10.1128/JCM.42.11.5022-5028.2004, 525156, 15528690.
9. Thibault VC, Grayon M, Boschiroli ML, Hubbans C, Overduin P, Stevenson K, Gutierrez MC, Supply P, Biet F. New variable-number tandem-repeat markers for typing Mycobacterium avium subsp. paratuberculosis and M. avium strains: comparison with IS900 and IS1245 restriction fragment length polymorphism typing. J Clin Microbiol 2007, 45:2404-2410. 10.1128/JCM.00476-07, 1951273, 17537942.
10. Möbius P, Luyven G, Hotzel H, Köhler H. High genetic diversity among Mycobacterium avium subsp. paratuberculosis strains from German cattle herds shown by combination of IS900 restriction fragment length polymorphism analysis and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing. J Clin Microbiol 2008, 46:972-981. 10.1128/JCM.01801-07, 2268378, 18174306.
11. El-Sayed A, Hassan AA, Natour S, Abdulmawjood A, Bülte M, Wolter W, Zschöck M. Evaluation of three molecular methods of repetitive element loci for differentiation of Mycobacterium avium subsp. paratuberculosis (MAP). J Microbiol 2009, 47:253-259. 10.1007/s12275-008-0257-1, 19557341.
12. Thibault VC, Grayon M, Boschiroli ML, Willery E, Allix-Béguec C, Stevenson K, Biet F, Supply P. Combined multilocus short-sequence-repeat and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing of Mycobacterium avium subsp. paratuberculosis isolates. J Clin Microbiol 2008, 46:4091-4094. 10.1128/JCM.01349-08, 2593263, 18923016.
13. Douarre PE, Cashman W, Buckley J, Coffey A, O'Mahony J. Molecular characterization of Mycobacterium avium subsp. paratuberculosis using multi-locus short sequence repeat (MLSSR) and mycobacterial interspersed repetitive units-variable number tandem repeat (MIRU-VNTR) typing methods. Vet Microbiol 2011, 149:482-7. 10.1016/j.vetmic.2010.12.001, 21269784.
14. Romano MI, Amadio A, Bigi F, Klepp L, Etchechoury I, Llana MN, Morsella C, Paolicchi F, Pavlik I, Bartos M, Leão SC, Cataldi A. Further analysis of VNTR and MIRU in the genome of Mycobacterium avium complex, and application to molecular epidemiology of isolates from South America. Vet Microbiol 2005, 110:221-237. 10.1016/j.vetmic.2005.07.009, 16171956.
15. Castellanos E, Romero B, Rodríguez S, de Juan L, Bezos J, Mateos A, Domínguez L, Aranaz A. Molecular characterization of Mycobacterium avium subspecies paratuberculosis Types II and III isolates by a combination of MIRU-VNTR loci. Vet Microbiol 2010, 144:118-126. 10.1016/j.vetmic.2009.12.028, 20116185.
16. Sevilla I, Li L, Amonsin A, Garrido JM, Geijo MV, Kapur V, Juste RA. Comparative analysis of Mycobacterium avium subsp. paratuberculosis isolates from cattle, sheep and goats by short sequence repeat and pulsed-field gel electrophoresis typing. BMC Microbiol 2008, 8:204. 10.1186/1471-2180-8-204, 2605457, 19032737.
17. Harris NB, Payeur JB, Kapur V, Sreevatsan S. Short-sequence-repeat analysis of Mycobacterium avium subsp. paratuberculosis and Mycobacterium avium subsp. avium isolates collected from animals throughout the United States reveals both stability of loci and extensive diversity. J Clin Microbiol 2006, 44:2970-2973. 10.1128/JCM.00584-06, 1594651, 16891519.
18. Ricchi M, Taddei R, Barbieri I, Belletti GL, Pacciarini ML, Arrigoni N. Typing of Mycobacterium avium subsp. paratuberculosis (MAP) strains isolated from different Italian regions by four Variable-Number Tandem Repeat (VNTR) methods alone or in association. Proceedings of 10th International Colloquium on Paratuberculosis 2009; Minneapolis (USA) 2009, 60-63.
19. van Hulzen KJ, Heuven HC, Nielen M, Hoeboer J, Santema WJ, Koets AP. Different Mycobacterium avium subsp. paratuberculosis MIRU-VNTR patterns coexist within cattle herds. Vet Microbiol 2011, 148:419-24. 10.1016/j.vetmic.2010.09.029, 21035277.
20. van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S, Struelens M, . European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group on Epidemiological Markers (ESGEM) Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect 2007, (Suppl 3):1-46. European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group on Epidemiological Markers (ESGEM).
21. Taddei R, Barbieri I, Pacciarini ML, Fallacara F, Belletti GL, Arrigoni N. Mycobacterium porcinum strains isolated from bovine bulk milk: implications for Mycobacterium avium subsp. paratuberculosis detection by PCR and culture. Vet Microbiol 2008, 130:338-347. 10.1016/j.vetmic.2008.02.007, 18378411.
22. Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001, 29:e45. 10.1093/nar/29.9.e45, 55695, 11328886.
23. Collins DM, De Zoete M, Cavaignac SM. Mycobacterium avium subsp. paratuberculosis strains from cattle and sheep can be distinguished by a PCR test based on a novel DNA sequence difference. J Clin Microbiol 2002, 40:4760-4762. 10.1128/JCM.40.12.4760-4762.2002, 154624, 12454189.
24. Whittington RJ, Taragel CA, Ottaway S, Marsh I, Seaman J, Fridriksdottir V. Molecular epidemiological confirmation and circumstances of occurrence of sheep (S) strains of Mycobacterium avium subsp. paratuberculosis in cases of paratuberculosis in cattle in Australia and sheep and cattle in Iceland. Vet Microbiol 2001, 79:311-322. 10.1016/S0378-1135(00)00364-3, 11267791.
25. Mazars E, Lesjean S, Banuls AL, Gilbert M, Vincent V, Gicquel B, Tibayrenc M, Locht C, Supply P. High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology. Proc Natl Acad Sci USA 2001, 98:1901-1906. 10.1073/pnas.98.4.1901, 29354, 11172048.
26. Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988, 26:2465-2466. 266921, 3069867.
27. Grundmann H, Hori S, Tanner G. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J Clin Microbiol 2001, 39:4190-4192. 10.1128/JCM.39.11.4190-4192.2001, 88515, 11682558.