메뉴 건너뛰기




Volumn 12, Issue 6, 2011, Pages 404-416

The -omics era- toward a systems-level understanding of streptomyces

Author keywords

Antibiotics; Bioinformatics; Genomics; Interactomics; Metabolomics; Proteomics; Streptomyces; Systems biology; Transcriptomics

Indexed keywords

PROTEOME; TRANSCRIPTOME;

EID: 80052829228     PISSN: 13892029     EISSN: 18755488     Source Type: Journal    
DOI: 10.2174/138920211797248556     Document Type: Review
Times cited : (22)

References (104)
  • 4
    • 0001693220 scopus 로고
    • Bacteriostatic and bacteriocidal substances produced by soil actinomycetes
    • Waksman, S. A.; Woodruff, H. B. Bacteriostatic and bacteriocidal substances produced by soil actinomycetes. Proc. Soc. Exper. Biol.,1940, 45, 609-614.
    • (1940) Proc. Soc. Exper. Biol , vol.45 , pp. 609-614
    • Waksman, S.A.1    Woodruff, H.B.2
  • 5
    • 0004820949 scopus 로고
    • Actinomycin and DNA transcription
    • Sobell, H. M. Actinomycin and DNA transcription. Proc. Natl. Acad. Sci. USA, 1985, 82(16), 5328-5331.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , Issue.16 , pp. 5328-5331
    • Sobell, H.M.1
  • 6
    • 0026656737 scopus 로고
    • Streptomycin biosynthesis and its regulation in Streptomycetes
    • Distler, J.; Mansouri, K.; Mayer, G.; Stockmann, M.; Piepersberg, W. Streptomycin biosynthesis and its regulation in Streptomycetes. Gene, 1992, 115(1/2), 105-111.
    • (1992) Gene , vol.115 , Issue.1-2 , pp. 105-111
    • Distler, J.1    Mansouri, K.2    Mayer, G.3    Stockmann, M.4    Piepersberg, W.5
  • 7
    • 0025786977 scopus 로고
    • Genetics of streptomycin production in Streptomyces griseus: Nucleotide sequence of five genes, str FGHIK, including a phosphatase gene
    • Mansouri, K.; Piepersberg, W. Genetics of streptomycin production in Streptomyces griseus: nucleotide sequence of five genes, str FGHIK, including a phosphatase gene. Mol. Gen. Genet., 1991, 228(3), 459-469.
    • (1991) Mol. Gen. Genet , vol.228 , Issue.3 , pp. 459-469
    • Mansouri, K.1    Piepersberg, W.2
  • 8
    • 70350146663 scopus 로고    scopus 로고
    • Identification of a novel Streptomyces chattanoogensis L10 and enhancing its natamycin production by overexpressing positive regulator ScnRII
    • Du, Y. L.; Chen, S. F.; Cheng, L. Y.; Shen, X. L.; Tian, Y.; Li, Y. Q. Identification of a novel Streptomyces chattanoogensis L10 and enhancing its natamycin production by overexpressing positive regulator ScnRII. J. Microbiol., 2009, 47(4), 506-513.
    • (2009) J. Microbiol , vol.47 , Issue.4 , pp. 506-513
    • Du, Y.L.1    Chen, S.F.2    Cheng, L.Y.3    Shen, X.L.4    Tian, Y.5    Li, Y.Q.6
  • 9
    • 55549086417 scopus 로고    scopus 로고
    • Streptomyces morphogenetics: Dissectingdifferentiation in a filamentous bacterium
    • Flardh, K.; Buttner, M. J. Streptomyces morphogenetics: dissectingdifferentiation in a filamentous bacterium. Nat. Rev. Microbiol., 2009, 7(1), 36-49.
    • (2009) Nat. Rev. Microbiol , vol.7 , Issue.1 , pp. 36-49
    • Flardh, K.1    Buttner, M.J.2
  • 10
    • 15744383448 scopus 로고    scopus 로고
    • Regulation of secondary metabolism in streptomycetes
    • Bibb, M. J. Regulation of secondary metabolism in streptomycetes. Curr. Opin. Microbiol., 2005, 8(2), 208-215.
    • (2005) Curr. Opin. Microbiol , vol.8 , Issue.2 , pp. 208-215
    • Bibb, M.J.1
  • 13
    • 67650128120 scopus 로고    scopus 로고
    • New approach to achieve high-level secretory expression of heterologous proteins by using Tat signal peptide
    • Li, Y. D.; Zhou, Z.; Lv, L. X.; Hou, X. P.; Li, Y. Q. New approach to achieve high-level secretory expression of heterologous proteins by using Tat signal peptide. Protein Pept. Lett., 2009, 16(6), 706-710.
    • (2009) Protein Pept. Lett , vol.16 , Issue.6 , pp. 706-710
    • Li, Y.D.1    Zhou, Z.2    Lv, L.X.3    Hou, X.P.4    Li, Y.Q.5
  • 14
    • 63849189906 scopus 로고    scopus 로고
    • Secretory production of recombinant proteins by Streptomyces
    • Vrancken, K.; Anné, J. Secretory production of recombinant proteins by Streptomyces. Future Microbiol., 2009, 4(2), 181-188.
    • (2009) Future Microbiol , vol.4 , Issue.2 , pp. 181-188
    • Vrancken, K.1    Anné, J.2
  • 15
  • 17
    • 33748951425 scopus 로고    scopus 로고
    • Evolution of plant pathogenicity in Streptomyces
    • Loria, R.; Kers, J.; Joshi, M. Evolution of plant pathogenicity in Streptomyces. Annu. Rev. Phytopathol., 2006, 44, 469-487.
    • (2006) Annu. Rev. Phytopathol , vol.44 , pp. 469-487
    • Loria, R.1    Kers, J.2    Joshi, M.3
  • 18
    • 77955554148 scopus 로고    scopus 로고
    • What does it take to be a plant pathogen: Genomic insights from Streptomyces species
    • Bignell, D. R. D.; Huguet-Tapia, J. C.; Joshi, M. V.; Pettis, G. S.; Loria, R. What does it take to be a plant pathogen: genomic insights from Streptomyces species. Anton Leeuw Int. J. G., 2010, 98(2), 179-194.
    • (2010) Anton Leeuw Int. J. G , vol.98 , Issue.2 , pp. 179-194
    • Bignell, D.R.D.1    Huguet-Tapia, J.C.2    Joshi, M.V.3    Pettis, G.S.4    Loria, R.5
  • 19
    • 68449090144 scopus 로고    scopus 로고
    • Genetic and physiological determinants of Streptomyces scabies pathogenicity
    • Lerat, S.; Simao-Beaunoir, A. M.; Beaulieu, C. Genetic and physiological determinants of Streptomyces scabies pathogenicity. Mol. Plant Pathol., 2009, 10(5), 579-585.
    • (2009) Mol. Plant Pathol , vol.10 , Issue.5 , pp. 579-585
    • Lerat, S.1    Simao-Beaunoir, A.M.2    Beaulieu, C.3
  • 20
    • 0032879027 scopus 로고    scopus 로고
    • Forty years of genetics with Streptomyces: From in vivo through in vitro to in silico
    • Hopwood, D. A. Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico. Microbiology, 1999, 145(Pt 9), 2183-2202.
    • (1999) Microbiology , vol.145 , Issue.Pt 9 , pp. 2183-2202
    • Hopwood, D.A.1
  • 29
    • 0001220718 scopus 로고
    • Induction of Cellulolytic and Xylanolytic Enzyme Systems in Streptomyces spp
    • Mackenzie, C. R.; Bilous, D.; Schneider, H.; Johnson, K. G. Induction of Cellulolytic and Xylanolytic Enzyme Systems in Streptomyces spp. Appl. Environ. Microbiol., 1987, 53(12), 2835-2839.
    • (1987) Appl. Environ. Microbiol , vol.53 , Issue.12 , pp. 2835-2839
    • Mackenzie, C.R.1    Bilous, D.2    Schneider, H.3    Johnson, K.G.4
  • 30
    • 0034036311 scopus 로고    scopus 로고
    • The homologous terminal sequence of the Streptomyces lividans chromosome and SLP2 plasmid
    • Bey, S. J.; Tsou, M. F.; Huang, C. H.; Yang, C. C.; Chen, C. W. The homologous terminal sequence of the Streptomyces lividans chromosome and SLP2 plasmid. Microbiology, 2000, 146 (Pt 4), 911-22.
    • (2000) Microbiology , vol.146 , Issue.Pt 4 , pp. 911-922
    • Bey, S.J.1    Tsou, M.F.2    Huang, C.H.3    Yang, C.C.4    Chen, C.W.5
  • 31
    • 0037444338 scopus 로고    scopus 로고
    • Recruitment of terminal protein to the ends of Streptomyces linear plasmids and chromosomes by a novel telomere-binding protein essential for linear DNA replication
    • Bao, K.; Cohen, S. N. Recruitment of terminal protein to the ends of Streptomyces linear plasmids and chromosomes by a novel telomere-binding protein essential for linear DNA replication. Genes Dev., 2003, 17(6), 774-785.
    • (2003) Genes Dev , vol.17 , Issue.6 , pp. 774-785
    • Bao, K.1    Cohen, S.N.2
  • 32
    • 0036173515 scopus 로고    scopus 로고
    • The terminal proteins of linear Streptomyces chromosomes and plasmids: A novel class of replication priming proteins
    • Yang, C. C.; Huang, C. H.; Li, C. Y.; Tsay, Y. G.; Lee, S. C.; Chen, C. W. The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins. Mol. Microbiol., 2002, 43(2), 297-305.
    • (2002) Mol. Microbiol , vol.43 , Issue.2 , pp. 297-305
    • Yang, C.C.1    Huang, C.H.2    Li, C.Y.3    Tsay, Y.G.4    Lee, S.C.5    Chen, C.W.6
  • 33
    • 79955042499 scopus 로고    scopus 로고
    • Chromosome diversity and similarity within the Actinomycetales
    • Kirby, R. Chromosome diversity and similarity within the Actinomycetales. FEMS Microbiol. Lett., 2011, 319(1), 1-10.
    • (2011) FEMS Microbiol. Lett , vol.319 , Issue.1 , pp. 1-10
    • Kirby, R.1
  • 34
    • 33845653671 scopus 로고    scopus 로고
    • Soil to genomics: The Streptomyces chromosome
    • Hopwood, D. A. Soil to genomics: the Streptomyces chromosome. Annu. Rev. Genet., 2006, 40, 1-23.
    • (2006) Annu. Rev. Genet , vol.40 , pp. 1-23
    • Hopwood, D.A.1
  • 35
    • 0031973808 scopus 로고    scopus 로고
    • Genetic instability of the Streptomyces chromosome
    • Volff, J. N.; Altenbuchner, J. Genetic instability of the Streptomyces chromosome. Mol. Microbiol., 1998, 27(2), 239-246.
    • (1998) Mol. Microbiol , vol.27 , Issue.2 , pp. 239-246
    • Volff, J.N.1    Altenbuchner, J.2
  • 36
    • 0013596021 scopus 로고
    • The guanine and cytosine content of genomic DNA and bacterial evolution
    • Muto, A.; Osawa, S. The guanine and cytosine content of genomic DNA and bacterial evolution. Proc. Natl. Acad. Sci. USA, 1987, 84(1), 166-169.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , Issue.1 , pp. 166-169
    • Muto, A.1    Osawa, S.2
  • 37
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    • RESEARCH0010
    • Knight, R. D.; Freeland, S. J.; Landweber, L. F. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol., 2001, 2(4), RESEARCH0010.
    • (2001) Genome Biol , vol.2 , Issue.4
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 38
    • 0026029699 scopus 로고
    • Tta Codons in Some Genes Prevent Their Expression in a Class of Developmental, Antibiotic-Negative, Streptomyces Mutants
    • Leskiw, B. K.; Lawlor, E. J.; Fernandezabalos, J. M.; Chater, K. F. Tta Codons in Some Genes Prevent Their Expression in a Class of Developmental, Antibiotic-Negative, Streptomyces Mutants. Proc. Natl. Acad. Sci. USA, 1991, 88(6), 2461-2465.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , Issue.6 , pp. 2461-2465
    • Leskiw, B.K.1    Lawlor, E.J.2    Fernandezabalos, J.M.3    Chater, K.F.4
  • 39
    • 0026344181 scopus 로고
    • The Use of a Rare Codon Specifically during Development
    • Leskiw, B. K.; Bibb, M. J.; Chater, K. F. The Use of a Rare Codon Specifically during Development. Mol. Microbiol., 1991, 5(12), 2861-2867.
    • (1991) Mol. Microbiol , vol.5 , Issue.12 , pp. 2861-2867
    • Leskiw, B.K.1    Bibb, M.J.2    Chater, K.F.3
  • 40
    • 0142125295 scopus 로고    scopus 로고
    • A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor
    • Takano, E.; Tao, M.; Long, F.; Bibb, M. J.; Wang, L.; Li, W.; Buttner, M. J.; Deng, Z. X.; Chater, K. F. A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor. Mol. Microbiol., 2003, 50(2), 475-486.
    • (2003) Mol. Microbiol , vol.50 , Issue.2 , pp. 475-486
    • Takano, E.1    Tao, M.2    Long, F.3    Bibb, M.J.4    Wang, L.5    Li, W.6    Buttner, M.J.7    Deng, Z.X.8    Chater, K.F.A.9
  • 41
    • 0026597059 scopus 로고
    • Codon usage in the G+C-rich Streptomyces genome
    • Wright, F.; Bibb, M. J. Codon usage in the G+C-rich Streptomyces genome. Gene, 1992, 113(1), 55-65.
    • (1992) Gene , vol.113 , Issue.1 , pp. 55-65
    • Wright, F.1    Bibb, M.J.2
  • 42
    • 79956343648 scopus 로고    scopus 로고
    • Novel Two-Component Systems Implied in Antibiotic Production in Streptomyces coelicolor
    • Yepes, A.; Rico, S.; Rodriguez-Garcia, A.; Santamaria, R. I.; Diaz, M. Novel Two-Component Systems Implied in Antibiotic Production in Streptomyces coelicolor. PLoS One, 2011, 6(5), e19980.
    • (2011) PLoS One , vol.6 , Issue.5
    • Yepes, A.1    Rico, S.2    Rodriguez-Garcia, A.3    Santamaria, R.I.4    Diaz, M.5
  • 43
    • 77956094202 scopus 로고    scopus 로고
    • Widespread homologous recombination within and between Streptomyces species
    • Doroghazi, J. R.; Buckley, D. H. Widespread homologous recombination within and between Streptomyces species. ISME J., 2010, 4(9), 1136-1143.
    • (2010) ISME J , vol.4 , Issue.9 , pp. 1136-1143
    • Doroghazi, J.R.1    Buckley, D.H.2
  • 44
    • 0034780493 scopus 로고    scopus 로고
    • Periplasmic stress and ECF sigma factors
    • Raivio, T. L.; Silhavy, T. J. Periplasmic stress and ECF sigma factors. Annu. Rev. Microbiol., 2001, 55, 591-624.
    • (2001) Annu. Rev. Microbiol , vol.55 , pp. 591-624
    • Raivio, T.L.1    Silhavy, T.J.2
  • 45
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
    • Darling, A. E.; Mau, B.; Perna, N.T. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One, 2010, 5 (6), e11147.
    • (2010) PLoS One , vol.5 , Issue.6
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 46
    • 0036804584 scopus 로고    scopus 로고
    • Once the circle has been broken: Dynamics and evolution of Streptomyces chromosomes
    • Chen, C. W.; Huang, C. H.; Lee, H. H.; Tsai, H. H.; Kirby, R. Once the circle has been broken: dynamics and evolution of Streptomyces chromosomes. Trends Genet., 2002, 18(10), 522-529.
    • (2002) Trends Genet , vol.18 , Issue.10 , pp. 522-529
    • Chen, C.W.1    Huang, C.H.2    Lee, H.H.3    Tsai, H.H.4    Kirby, R.5
  • 47
  • 48
    • 0035046878 scopus 로고    scopus 로고
    • Lineage-specific gene expansions in bacterial and archaeal genomes
    • Jordan, I. K.; Makarova, K. S.; Spouge, J. L.; Wolf, Y. I.; Koonin, E. V. Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Res., 2001, 11(4), 555-565.
    • (2001) Genome Res , vol.11 , Issue.4 , pp. 555-565
    • Jordan, I.K.1    Makarova, K.S.2    Spouge, J.L.3    Wolf, Y.I.4    Koonin, E.V.5
  • 50
    • 33745963185 scopus 로고    scopus 로고
    • Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups
    • Gao, B.; Paramanathan, R.; Gupta, R. S. Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups. Antonie van Leeuwenhoek, 2006, 90(1), 69-91.
    • (2006) Antonie Van Leeuwenhoek , vol.90 , Issue.1 , pp. 69-91
    • Gao, B.1    Paramanathan, R.2    Gupta, R.S.3
  • 52
    • 78650226688 scopus 로고    scopus 로고
    • Crossinteraction of anti-sigmaH factor RshA with BldG, an anti-sigma factor antagonist in Streptomyces griseus
    • Takano, H.; Fujimoto, M.; Urano, H.; Beppu, T.; Ueda, K. Crossinteraction of anti-sigmaH factor RshA with BldG, an anti-sigma factor antagonist in Streptomyces griseus. FEMS Microbiol. Lett., 2011, 314(2), 158-163.
    • (2011) FEMS Microbiol. Lett , vol.314 , Issue.2 , pp. 158-163
    • Takano, H.1    Fujimoto, M.2    Urano, H.3    Beppu, T.4    Ueda, K.5
  • 53
    • 0035576880 scopus 로고    scopus 로고
    • Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays
    • Huang, J.; Lih, C. J.; Pan, K. H.; Cohen, S. N. Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays. Genes Dev., 2001, 15(23), 3183-3192.
    • (2001) Genes Dev , vol.15 , Issue.23 , pp. 3183-3192
    • Huang, J.1    Lih, C.J.2    Pan, K.H.3    Cohen, S.N.4
  • 54
    • 69449094147 scopus 로고    scopus 로고
    • Development and application of versatile high density microarrays for genomewide analysis of Streptomyces coelicolor: Characterization of the HspR regulon
    • Bucca, G.; Laing, E.; Mersinias, V.; Allenby, N.; Hurd, D.; Holdstock, J.; Brenner, V.; Harrison, M.; Smith, C. P. Development and application of versatile high density microarrays for genomewide analysis of Streptomyces coelicolor: characterization of the HspR regulon. Genome Biol., 2009, 10 (1), R5.
    • (2009) Genome Biol , vol.10 , Issue.1
    • Bucca, G.1    Laing, E.2    Mersinias, V.3    Allenby, N.4    Hurd, D.5    Holdstock, J.6    Brenner, V.7    Harrison, M.8    Smith, C.P.9
  • 55
  • 56
    • 37548999354 scopus 로고    scopus 로고
    • Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor
    • Charaniya, S.; Mehra, S.; Lian, W.; Jayapal, K. P.; Karypis, G.; Hu, W.-S. Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor. Nucleic Acids Res., 2007, 35(21), 7222-7236.
    • (2007) Nucleic Acids Res , vol.35 , Issue.21 , pp. 7222-7236
    • Charaniya, S.1    Mehra, S.2    Lian, W.3    Jayapal, K.P.4    Karypis, G.5    Hu, W.-S.6
  • 57
    • 23844442155 scopus 로고    scopus 로고
    • A master regulator sigmaB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor
    • Lee, E. J.; Karoonuthaisiri, N.; Kim, H. S.; Park, J. H.; Cha, C. J.; Kao, C. M.; Roe, J. H. A master regulator sigmaB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor. Mol. Microbiol., 2005, 57(5), 1252-1264.
    • (2005) Mol. Microbiol , vol.57 , Issue.5 , pp. 1252-1264
    • Lee, E.J.1    Karoonuthaisiri, N.2    Kim, H.S.3    Park, J.H.4    Cha, C.J.5    Kao, C.M.6    Roe, J.H.7
  • 58
    • 40949165022 scopus 로고    scopus 로고
    • Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)
    • Lian, W.; Jayapal, K. P.; Charaniya, S.; Mehra, S.; Glod, F.; Kyung, Y. S.; Sherman, D. H.; Hu, W. S. Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2). BMC Genomics, 2008, 9, 56.
    • (2008) BMC Genomics , vol.9 , pp. 56
    • Lian, W.1    Jayapal, K.P.2    Charaniya, S.3    Mehra, S.4    Glod, F.5    Kyung, Y.S.6    Sherman, D.H.7    Hu, W.S.8
  • 60
    • 0023192121 scopus 로고
    • The structure of inducing factors for virginiamycin production in Streptomyces virginiae
    • Yamada, Y.; Sugamura, K.; Kondo, K.; Yanagimoto, M.; Okada, H. The structure of inducing factors for virginiamycin production in Streptomyces virginiae. J. Antibiot. (Tokyo), 1987, 40(4), 496-504.
    • (1987) J. Antibiot. (Tokyo) , vol.40 , Issue.4 , pp. 496-504
    • Yamada, Y.1    Sugamura, K.2    Kondo, K.3    Yanagimoto, M.4    Okada, H.5
  • 61
    • 0034646635 scopus 로고    scopus 로고
    • Purification and structural determination of SCB1, a gamma-butyrolactone that elicits antibiotic production in Streptomyces coelicolor A3(2)
    • Takano, E.; Nihira, T.; Hara, Y.; Jones, J. J.; Gershater, C. J.; Yamada, Y.; Bibb, M. Purification and structural determination of SCB1, a gamma-butyrolactone that elicits antibiotic production in Streptomyces coelicolor A3(2). J. Biol. Chem., 2000, 275(15), 11010-11016.
    • (2000) J. Biol. Chem , vol.275 , Issue.15 , pp. 11010-11016
    • Takano, E.1    Nihira, T.2    Hara, Y.3    Jones, J.J.4    Gershater, C.J.5    Yamada, Y.6    Bibb, M.7
  • 62
    • 20244388405 scopus 로고    scopus 로고
    • A bacterial hormone (the SCB1) directly controls the expression of a pathway-specific regulatory gene in the cryptic type I polyketide biosynthetic gene cluster of Streptomyces coelicolor
    • Takano, E.; Kinoshita, H.; Mersinias, V.; Bucca, G.; Hotchkiss, G.; Nihira, T.; Smith, C. P.; Bibb, M.; Wohlleben, W.; Chater, K. A bacterial hormone (the SCB1) directly controls the expression of a pathway-specific regulatory gene in the cryptic type I polyketide biosynthetic gene cluster of Streptomyces coelicolor. Mol. Microbiol., 2005, 56(2), 465-479.
    • (2005) Mol. Microbiol , vol.56 , Issue.2 , pp. 465-479
    • Takano, E.1    Kinoshita, H.2    Mersinias, V.3    Bucca, G.4    Hotchkiss, G.5    Nihira, T.6    Smith, C.P.7    Bibb, M.8    Wohlleben, W.9    Chater, K.10
  • 63
    • 34249805418 scopus 로고    scopus 로고
    • Interspecies DNA microarray analysis identifies WblA as a pleiotropic down-regulator of antibiotic biosynthesis in Streptomyces
    • Kang, S. H.; Huang, J.; Lee, H. N.; Hur, Y. A.; Cohen, S. N.; Kim, E. S. Interspecies DNA microarray analysis identifies WblA as a pleiotropic down-regulator of antibiotic biosynthesis in Streptomyces. J. Bacteriol., 2007, 189(11), 4315-4319.
    • (2007) J. Bacteriol , vol.189 , Issue.11 , pp. 4315-4319
    • Kang, S.H.1    Huang, J.2    Lee, H.N.3    Hur, Y.A.4    Cohen, S.N.5    Kim, E.S.6
  • 64
    • 77951616259 scopus 로고    scopus 로고
    • Putative TetR Family Transcriptional Regulator SCO1712 Encodes an Antibiotic Downregulator in Streptomyces coelicolor
    • Lee, H. N.; Huang, J.; Im, J. H.; Kim, S. H.; Noh, J. H.; Cohen, S. N.; Kim, E. S. Putative TetR Family Transcriptional Regulator SCO1712 Encodes an Antibiotic Downregulator in Streptomyces coelicolor. Appl. Environ. Microbiol., 2010, 76(9), 3039-3043.
    • (2010) Appl. Environ. Microbiol , vol.76 , Issue.9 , pp. 3039-3043
    • Lee, H.N.1    Huang, J.2    Im, J.H.3    Kim, S.H.4    Noh, J.H.5    Cohen, S.N.6    Kim, E.S.7
  • 65
    • 79953172246 scopus 로고    scopus 로고
    • Transcriptome analysis of an antibiotic downregulator mutant and synergistic Actinorhodin stimulation via disruption of a precursor flux regulator in Streptomyces coelicolor
    • Kim, S. H.; Lee, H. N.; Kim, H. J.; Kim, E. S. Transcriptome analysis of an antibiotic downregulator mutant and synergistic Actinorhodin stimulation via disruption of a precursor flux regulator in Streptomyces coelicolor. Appl. Environ. Microbiol., 2011, 77(5), 1872-1877.
    • (2011) Appl. Environ. Microbiol , vol.77 , Issue.5 , pp. 1872-1877
    • Kim, S.H.1    Lee, H.N.2    Kim, H.J.3    Kim, E.S.4
  • 66
    • 68949197494 scopus 로고    scopus 로고
    • Transcriptomics analyses reveal global roles of the regulator AveI in Streptomyces avermitilis
    • Chen, L.; Chen, J.; Jiang, Y.; Zhang, W.; Jiang, W.; Lu, Y. Transcriptomics analyses reveal global roles of the regulator AveI in Streptomyces avermitilis. FEMS Microbiol. Lett., 2009, 298(2), 199-207.
    • (2009) FEMS Microbiol. Lett , vol.298 , Issue.2 , pp. 199-207
    • Chen, L.1    Chen, J.2    Jiang, Y.3    Zhang, W.4    Jiang, W.5    Lu, Y.6
  • 67
    • 0037383031 scopus 로고    scopus 로고
    • Signalling early developmental events in two highly diverged Streptomyces species
    • Chater, K. F.; Horinouchi, S. Signalling early developmental events in two highly diverged Streptomyces species. Mol. Microbiol., 2003, 48(1), 9-15.
    • (2003) Mol. Microbiol , vol.48 , Issue.1 , pp. 9-15
    • Chater, K.F.1    Horinouchi, S.2
  • 68
    • 0015387129 scopus 로고
    • A morphological and genetic mapping study of white colony mutants of Streptomyces coelicolor
    • Chater, K. F. A morphological and genetic mapping study of white colony mutants of Streptomyces coelicolor. J. Gen. Microbiol., 1972, 72(1), 9-28.
    • (1972) J. Gen. Microbiol , vol.72 , Issue.1 , pp. 9-28
    • Chater, K.F.1
  • 69
    • 0038681008 scopus 로고    scopus 로고
    • The chaplins: A family of hydrophobic cell-surface proteins involved in aerial mycelium formation in Streptomyces coelicolor
    • Elliot, M. A.; Karoonuthaisiri, N.; Huang, J.; Bibb, M. J.; Cohen, S. N.; Kao, C. M.; Buttner, M. J. The chaplins: a family of hydrophobic cell-surface proteins involved in aerial mycelium formation in Streptomyces coelicolor. Genes Dev., 2003, 17(14), 1727-1740.
    • (2003) Genes Dev , vol.17 , Issue.14 , pp. 1727-1740
    • Elliot, M.A.1    Karoonuthaisiri, N.2    Huang, J.3    Bibb, M.J.4    Cohen, S.N.5    Kao, C.M.6    Buttner, M.J.7
  • 70
    • 0031794754 scopus 로고    scopus 로고
    • A surface active protein involved in aerial hyphae formation in the filamentous fungus Schizophillum commune restores the capacity of a bald mutant of the filamentous bacterium Streptomyces coelicolor to erect aerial structures
    • Tillotson, R. D.; Wosten, H. A.; Richter, M.; Willey, J. M. A surface active protein involved in aerial hyphae formation in the filamentous fungus Schizophillum commune restores the capacity of a bald mutant of the filamentous bacterium Streptomyces coelicolor to erect aerial structures. Mol. Microbiol., 1998, 30(3), 595-602.
    • (1998) Mol. Microbiol , vol.30 , Issue.3 , pp. 595-602
    • Tillotson, R.D.1    Wosten, H.A.2    Richter, M.3    Willey, J.M.4
  • 71
    • 8844259757 scopus 로고    scopus 로고
    • Building filaments in the air: Aerial morphogenesis in bacteria and fungi
    • Elliot, M. A.; Talbot, N. J. Building filaments in the air: aerial morphogenesis in bacteria and fungi. Curr. Opin. Microbiol., 2004, 7(6), 594-601.
    • (2004) Curr. Opin. Microbiol , vol.7 , Issue.6 , pp. 594-601
    • Elliot, M.A.1    Talbot, N.J.2
  • 72
    • 0036887067 scopus 로고    scopus 로고
    • A central regulator of morphological differentiation in the multicellular bacterium Streptomyces coelicolor
    • Nguyen, K. T.; Willey, J. M.; Nguyen, L. D.; Nguyen, L. T.; Viollier, P. H.; Thompson, C. J. A central regulator of morphological differentiation in the multicellular bacterium Streptomyces coelicolor. Mol. Microbiol., 2002, 46(5), 1223-1238.
    • (2002) Mol. Microbiol , vol.46 , Issue.5 , pp. 1223-1238
    • Nguyen, K.T.1    Willey, J.M.2    Nguyen, L.D.3    Nguyen, L.T.4    Viollier, P.H.5    Thompson, C.J.6
  • 73
    • 33747063538 scopus 로고    scopus 로고
    • Rag Genes: Novel components of the RamR regulon that trigger morphologicaldifferentiation in Streptomyces coelicolor
    • Paolo, S. S.; Huang, J.; Cohen, S. N.; Thompson, C. J. Rag Genes: Novel components of the RamR regulon that trigger morphologicaldifferentiation in Streptomyces coelicolor. Mol. Microbiol., 2006, 61(5), 1167-1186.
    • (2006) Mol. Microbiol , vol.61 , Issue.5 , pp. 1167-1186
    • Paolo, S.S.1    Huang, J.2    Cohen, S.N.3    Thompson, C.J.4
  • 74
    • 78649368524 scopus 로고    scopus 로고
    • Genes essential for morphological development and antibiotic production in Streptomyces coelicolor are targets of BldD during vegetative growth
    • den Hengst, C. D.; Tran, N. T.; Bibb, M. J.; Chandra, G.; Leskiw, B. K.; Buttner, M. J. Genes essential for morphological development and antibiotic production in Streptomyces coelicolor are targets of BldD during vegetative growth. Mol. Microbiol., 2010, 78(2), 361-379.
    • (2010) Mol. Microbiol , vol.78 , Issue.2 , pp. 361-379
    • den Hengst, C.D.1    Tran, N.T.2    Bibb, M.J.3    Chandra, G.4    Leskiw, B.K.5    Buttner, M.J.6
  • 75
    • 0141818925 scopus 로고    scopus 로고
    • Negative feedback regulation of dnaK, clpB and lon expression by the DnaK chaperone machine in Streptomyces coelicolor, identified by transcriptome and in vivo DnaK-depletion analysis
    • Bucca, G.; Brassington, A. M.; Hotchkiss, G.; Mersinias, V.; Smith, C. P. Negative feedback regulation of dnaK, clpB and lon expression by the DnaK chaperone machine in Streptomyces coelicolor, identified by transcriptome and in vivo DnaK-depletion analysis. Mol. Microbiol., 2003, 50(1), 153-166.
    • (2003) Mol. Microbiol , vol.50 , Issue.1 , pp. 153-166
    • Bucca, G.1    Brassington, A.M.2    Hotchkiss, G.3    Mersinias, V.4    Smith, C.P.5
  • 76
    • 38349086492 scopus 로고    scopus 로고
    • The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2)
    • Hesketh, A.; Chen, W. J.; Ryding, J.; Chang, S.; Bibb, M. The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2). Genome Biol., 2007, 8(8), R161.
    • (2007) Genome Biol , vol.8 , Issue.8
    • Hesketh, A.1    Chen, W.J.2    Ryding, J.3    Chang, S.4    Bibb, M.5
  • 77
    • 18044367581 scopus 로고    scopus 로고
    • PpGpp: A global regulator in Escherichia coli
    • Magnusson, L. U.; Farewell, A.; Nystrom, T. PpGpp: a global regulator in Escherichia coli. Trends Microbiol., 2005, 13(5), 236-242.
    • (2005) Trends Microbiol , vol.13 , Issue.5 , pp. 236-242
    • Magnusson, L.U.1    Farewell, A.2    Nystrom, T.3
  • 78
    • 79953265166 scopus 로고    scopus 로고
    • Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes
    • Pullan, S. T.; Chandra, G.; Bibb, M. J.; Merrick, M. Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes. BMC Genomics, 2011, 12(1), 175.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 175
    • Pullan, S.T.1    Chandra, G.2    Bibb, M.J.3    Merrick, M.4
  • 79
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
    • Karas, M.; Hillenkamp, F. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal. Chem., 1988, 60(20), 2299-2301.
    • (1988) Anal. Chem , vol.60 , Issue.20 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 81
    • 85016229161 scopus 로고    scopus 로고
    • Large-scale protein identification using mass spectrometry
    • Lin, D.; Tabb, D. L.; Yates, J. R., 3rd Large-scale protein identification using mass spectrometry. Biochim. Biophys. Acta, 2003, 1646(1-2), 1-10.
    • (2003) Biochim. Biophys. Acta , vol.1646 , Issue.1-2 , pp. 1-10
    • Lin, D.1    Tabb, D.L.2    Yates, J.R.3
  • 82
    • 34548559369 scopus 로고    scopus 로고
    • Microbial proteomics: A mass spectrometry primer for biologists
    • Graham, R.; Graham, C.; McMullan, G. Microbial proteomics: a mass spectrometry primer for biologists. Microb. Cell Fact., 2007, 6, 26.
    • (2007) Microb. Cell Fact , vol.6 , pp. 26
    • Graham, R.1    Graham, C.2    McMullan, G.3
  • 83
    • 0036433469 scopus 로고    scopus 로고
    • Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor
    • Hesketh, A. R.; Chandra, G.; Shaw, A. D.; Rowland, J. J.; Kell, D. B.; Bibb, M. J.; Chater, K. F. Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor. Mol. Microbiol., 2002, 46(4), 917-932.
    • (2002) Mol. Microbiol , vol.46 , Issue.4 , pp. 917-932
    • Hesketh, A.R.1    Chandra, G.2    Shaw, A.D.3    Rowland, J.J.4    Kell, D.B.5    Bibb, M.J.6    Chater, K.F.7
  • 84
    • 17644368169 scopus 로고    scopus 로고
    • Changes in the extracellular proteome caused by the absence of the bldA gene product, a developmentally significant tRNA, reveal a new target for the pleiotropic regulator AdpA in Streptomyces coelicolor
    • Kim, D. W.; Chater, K.; Lee, K. J.; Hesketh, A. Changes in the extracellular proteome caused by the absence of the bldA gene product, a developmentally significant tRNA, reveal a new target for the pleiotropic regulator AdpA in Streptomyces coelicolor. J. Bacteriol., 2005, 187(9), 2957-2966.
    • (2005) J. Bacteriol , vol.187 , Issue.9 , pp. 2957-2966
    • Kim, D.W.1    Chater, K.2    Lee, K.J.3    Hesketh, A.4
  • 85
    • 70350181581 scopus 로고    scopus 로고
    • Dynamic changes in the extracellular proteome caused by absence of a pleiotropic regulator AdpA in Streptomyces griseus
    • Akanuma, G.; Hara, H.; Ohnishi, Y.; Horinouchi, S. Dynamic changes in the extracellular proteome caused by absence of a pleiotropic regulator AdpA in Streptomyces griseus. Mol. Microbiol., 2009, 73(5), 898-912.
    • (2009) Mol. Microbiol , vol.73 , Issue.5 , pp. 898-912
    • Akanuma, G.1    Hara, H.2    Ohnishi, Y.3    Horinouchi, S.4
  • 86
    • 33644856642 scopus 로고    scopus 로고
    • Pathfinders and trailblazers: A prokaryotic targeting system for transport of folded proteins
    • Sargent, F.; Berks, B. C.; Palmer, T. Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. FEMS Microbiol. Lett., 2006, 254(2), 198-207.
    • (2006) FEMS Microbiol. Lett , vol.254 , Issue.2 , pp. 198-207
    • Sargent, F.1    Berks, B.C.2    Palmer, T.3
  • 89
    • 50249148322 scopus 로고    scopus 로고
    • The importance of the twinarginine translocation pathway for bacterial virulence
    • De Buck, E.; Lammertyn, E.; Anne, J. The importance of the twinarginine translocation pathway for bacterial virulence. Trends Microbiol., 2008, 16(9), 442-453.
    • (2008) Trends Microbiol , vol.16 , Issue.9 , pp. 442-453
    • de Buck, E.1    Lammertyn, E.2    Anne, J.3
  • 91
    • 77956329728 scopus 로고    scopus 로고
    • Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures
    • Manteca, A.; Jung, H. R.; Schwammle, V.; Jensen, O. N.; Sanchez, J. Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures. J. Proteome Res., 2010, 9(9), 4801-4811.
    • (2010) J. Proteome Res , vol.9 , Issue.9 , pp. 4801-4811
    • Manteca, A.1    Jung, H.R.2    Schwammle, V.3    Jensen, O.N.4    Sanchez, J.5
  • 92
    • 77954696406 scopus 로고    scopus 로고
    • Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and highaccuracy mass spectrometry
    • Parker, J. L.; Jones, A. M.; Serazetdinova, L.; Saalbach, G.; Bibb, M. J.; Naldrett, M. J. Analysis of the phosphoproteome of the multicellular bacterium Streptomyces coelicolor A3(2) by protein/peptide fractionation, phosphopeptide enrichment and highaccuracy mass spectrometry. Proteomics, 2010, 10(13), 2486-2497.
    • (2010) Proteomics , vol.10 , Issue.13 , pp. 2486-2497
    • Parker, J.L.1    Jones, A.M.2    Serazetdinova, L.3    Saalbach, G.4    Bibb, M.J.5    Naldrett, M.J.6
  • 93
    • 20444397992 scopus 로고    scopus 로고
    • Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
    • Borodina, I.; Krabben, P.; Nielsen, J. Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism. Genome Res., 2005, 15(6), 820-829.
    • (2005) Genome Res , vol.15 , Issue.6 , pp. 820-829
    • Borodina, I.1    Krabben, P.2    Nielsen, J.3
  • 97
    • 54749131192 scopus 로고    scopus 로고
    • Profiling of acarviostatin family secondary metabolites secreted by Streptomyces coelicoflavus ZG0656 using ultraperformance liquid chromatography coupled with electrospray ionization mass spectrometry
    • Geng, P.; Meng, X.; Bai, G.; Luo, G. Profiling of acarviostatin family secondary metabolites secreted by Streptomyces coelicoflavus ZG0656 using ultraperformance liquid chromatography coupled with electrospray ionization mass spectrometry. Anal. Chem., 2008, 80(19), 7554-7561.
    • (2008) Anal. Chem , vol.80 , Issue.19 , pp. 7554-7561
    • Geng, P.1    Meng, X.2    Bai, G.3    Luo, G.4
  • 98
    • 0842288337 scopus 로고    scopus 로고
    • Inferring cellular networks using probabilistic graphical models
    • Friedman, N. Inferring cellular networks using probabilistic graphical models. Science, 2004, 303(5659), 799-805.
    • (2004) Science , vol.303 , Issue.5659 , pp. 799-805
    • Friedman, N.1
  • 99
  • 100
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol. Biol. Evol., 2011.
    • (2011) Mol. Biol. Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 102
    • 79959335131 scopus 로고    scopus 로고
    • Draft Genome Sequence of the Marine Bacterium Streptomyces griseoaurantiacus M045, Which Produces Novel Manumycin-Type Antibiotics with a pABA Core Component
    • Li, F.; Jiang, P.; Zheng, H.; Wang, S.; Zhao, G.; Qin, S.; Liu, Z. Draft Genome Sequence of the Marine Bacterium Streptomyces griseoaurantiacus M045, Which Produces Novel Manumycin-Type Antibiotics with a pABA Core Component. J. Bacteriol., 2011, 193(13), 3417-3418.
    • (2011) J. Bacteriol , vol.193 , Issue.13 , pp. 3417-3418
    • Li, F.1    Jiang, P.2    Zheng, H.3    Wang, S.4    Zhao, G.5    Qin, S.6    Liu, Z.7
  • 104
    • 79960394911 scopus 로고    scopus 로고
    • Draft Genome Sequence of the Marine Streptomyces sp. Strain PP-C42, Isolated from the Baltic Sea
    • Fan, L.; Liu, Y.; Li, Z.; Baumann, H. I.; Kleinschmidt, K.; Ye, W.; Imhoff, J. F.; Kleine, M.; Cai, D. Draft Genome Sequence of the Marine Streptomyces sp. Strain PP-C42, Isolated from the Baltic Sea. J. Bacteriol., 2011, 193(14), 3691-3692.
    • (2011) J. Bacteriol , vol.193 , Issue.14 , pp. 3691-3692
    • Fan, L.1    Liu, Y.2    Li, Z.3    Baumann, H.I.4    Kleinschmidt, K.5    Ye, W.6    Imhoff, J.F.7    Kleine, M.8    Cai, D.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.