-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Part 2): 213-221
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 2
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
2
-
-
34548539380
-
Structure of a tyrosine phosphatase adhesive interaction reveals a spacer-clamp mechanism
-
Aricescu AR, Siebold C, Choudhuri K, Chang VT, Lu W, Davis SJ, van der Merwe PA, Jones EY (2007) Structure of a tyrosine phosphatase adhesive interaction reveals a spacer-clamp mechanism. Science 317: 1217-1220
-
(2007)
Science
, vol.317
, pp. 1217-1220
-
-
Aricescu, A.R.1
Siebold, C.2
Choudhuri, K.3
Chang, V.T.4
Lu, W.5
Davis, S.J.6
Van Der Merwe, P.A.7
Jones, E.Y.8
-
3
-
-
0022498009
-
Rapid microprocedure for isolating detergent-insoluble outer membrane proteins from Haemophilus species
-
Carlone GM, Thomas ML, Rumschlag HS, Sottnek FO (1986) Rapid microprocedure for isolating detergent-insoluble outer membrane proteins from Haemophilus species. J Clin Microbiol 24: 330-332 (Pubitemid 16046386)
-
(1986)
Journal of Clinical Microbiology
, vol.24
, Issue.3
, pp. 330-332
-
-
Carlone, G.M.1
Thomas, M.L.2
Rumschlag, H.S.3
Sottnek, F.O.4
-
4
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
CCP4
-
CCP4 (1994) The CCP4 suite: programs for protein crystallography. Acta Cryst D 50: 760-763
-
(1994)
Acta Cryst D
, vol.50
, pp. 760-763
-
-
-
5
-
-
35848952765
-
Protein secretion in gram-negative bacteria via the autotransporter pathway
-
DOI 10.1146/annurev.micro.61.080706.093233
-
Dautin N, Bernstein HD (2007) Protein secretion in Gram-negative bacteria via the autotransporter pathway. Annu Rev Microbiol 61: 89-112 (Pubitemid 350058201)
-
(2007)
Annual Review of Microbiology
, vol.61
, pp. 89-112
-
-
Dautin, N.1
Bernstein, H.D.2
-
7
-
-
0036228505
-
Biofilms: Survival mechanisms of clinically relevant microorganisms
-
DOI 10.1128/CMR.15.2.167-193.2002
-
Donlan RM, Costerton JW (2002) Biofilms: survival mechanisms of clinically relevant microorganisms. Clin Microbiol Rev 15: 167-193 (Pubitemid 34303762)
-
(2002)
Clinical Microbiology Reviews
, vol.15
, Issue.2
, pp. 167-193
-
-
Donlan, R.M.1
Costerton, J.W.2
-
8
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
Engh RA, Huber R (1991) Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr A 47: 392-400
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
9
-
-
0025187838
-
Substrate specificity of trypsin investigated by using a genetic selection
-
Evnin LB, Vasquez JR, Craik CS (1990) Substrate specificity of trypsin investigated by using a genetic selection. Proc Natl Acad Sci USA 87 (17): 6659-6663
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, Issue.17
, pp. 6659-6663
-
-
Evnin, L.B.1
Vasquez, J.R.2
Craik, C.S.3
-
10
-
-
0037347052
-
The Haemophilus influenzae Hap autotransporter mediates microcolony formation and adherence to epithelial cells and extracellular matrix via binding regions in the C-terminal end of the passenger domain
-
DOI 10.1046/j.1462-5822.2003.00266.x
-
Fink DL, Buscher AZ, Green B, Fernsten P, St Geme III JW (2003) The Haemophilus influenzae Hap autotransporter mediates microcolony formation and adherence to epithelial cells and extracellular matrix via binding regions in the C-terminal end of the passenger domain. Cell Microbiol 5: 175-186 (Pubitemid 36348034)
-
(2003)
Cellular Microbiology
, vol.5
, Issue.3
, pp. 175-186
-
-
Fink, D.L.1
Buscher, A.Z.2
Green, B.3
Fernsten, P.4
St. Geme III, J.W.5
-
11
-
-
0036719965
-
The Haemophilus influenzae Hap autotransporter binds to fibronectin, laminin, and collagen IV
-
Fink DL, Green BA, St Geme III JW (2002) The Haemophilus influenzae Hap autotransporter binds to fibronectin, laminin, and collagen IV. Infect Immun 70: 4902-4907
-
(2002)
Infect Immun
, vol.70
, pp. 4902-4907
-
-
Fink, D.L.1
Green, B.A.2
St Geme Iii, J.W.3
-
12
-
-
0037371554
-
Chromosomal expression of the Haemophilus influenzae Hap autotransporter allows fine-tuned regulation of adhesive potential via inhibition of intermolecular autoproteolysis
-
DOI 10.1128/JB.185.5.1608-1615.2003
-
Fink DL, St Geme III JW (2003) Chromosomal expression of the Haemophilus influenzae Hap autotransporter allows fine-tuned regulation of adhesive potential via inhibition of intermolecular autoproteolysis. J Bacteriol 185: 1608-1615 (Pubitemid 36245963)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.5
, pp. 1608-1615
-
-
Fink, D.L.1
St. Geme III, J.W.2
-
13
-
-
0034640117
-
The crystal structure of the ligand binding module of axonin-1/TAG-1 suggests a zipper mechanism for neural cell adhesion
-
Freigang J, Proba K, Leder L, Diederichs K, Sonderegger P, Welte W (2000) The crystal structure of the ligand binding module of axonin-1/TAG-1 suggests a zipper mechanism for neural cell adhesion. Cell 101: 425-433
-
(2000)
Cell
, vol.101
, pp. 425-433
-
-
Freigang, J.1
Proba, K.2
Leder, L.3
Diederichs, K.4
Sonderegger, P.5
Welte, W.6
-
14
-
-
77951218498
-
Conformation change in a self-recognizing autotransporter modulates bacterial cell-cell interaction
-
Girard V, Cote JP, Charbonneau ME, Campos M, Berthiaume F, Hancock MA, Siddiqui N, Mourez M (2010) Conformation change in a self-recognizing autotransporter modulates bacterial cell-cell interaction. J Biol Chem 285 (14): 10616-10626
-
(2010)
J Biol Chem
, vol.285
, Issue.14
, pp. 10616-10626
-
-
Girard, V.1
Cote, J.P.2
Charbonneau, M.E.3
Campos, M.4
Berthiaume, F.5
Hancock, M.A.6
Siddiqui, N.7
Mourez, M.8
-
15
-
-
1842612577
-
Bacterial biofilms: From the natural environment to infectious diseases
-
DOI 10.1038/nrmicro821
-
Hall-Stoodley L, Costerton JW, Stoodley P (2004) Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol 2: 95-108 (Pubitemid 39490064)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.2
, pp. 95-108
-
-
Hall-Stoodley, L.1
Costerton, J.W.2
Stoodley, P.3
-
16
-
-
0032816696
-
Antigen-43-mediated autoaggregation of Escherichia coli is blocked by fimbriation
-
Hasman H, Chakraborty T, Klemm P (1999) Antigen-43-mediated autoaggregation of Escherichia coli is blocked by fimbriation. J Bacteriol 181 (16): 4834-4841 (Pubitemid 29383511)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.16
, pp. 4834-4841
-
-
Hasman, H.1
Chakraborty, T.2
Klemm, P.3
-
17
-
-
0035111746
-
Virulence functions of autotran-sporter proteins
-
Henderson IR, Nataro JP (2001) Virulence functions of autotran-sporter proteins. Infect Immun 69: 1231-1243
-
(2001)
Infect Immun
, vol.69
, pp. 1231-1243
-
-
Henderson, I.R.1
Nataro, J.P.2
-
18
-
-
0032169654
-
The great escape: Structure and function of the autotransporter proteins
-
DOI 10.1016/S0966-842X(98)01318-3, PII S0966842X98013183
-
Henderson IR, Navarro-Garcia F, Nataro JP (1998) The great escape: structure and function of the autotransporter proteins. Trends Microbiol 6: 370-378 (Pubitemid 28473198)
-
(1998)
Trends in Microbiology
, vol.6
, Issue.9
, pp. 370-378
-
-
Henderson, I.R.1
Navarro-Garcia, F.2
Nataro, J.P.3
-
19
-
-
0030693901
-
Structural determinants of processing and secretion of the Haemophilus influenzae Hap protein
-
Hendrixson DR, de la Morena ML, Stathopoulos C, St Geme III JW (1997) Structural determinants of processing and secretion of the Haemophilus influenzae hap protein. Mol Microbiol 26: 505-518 (Pubitemid 27487849)
-
(1997)
Molecular Microbiology
, vol.26
, Issue.3
, pp. 505-518
-
-
Hendrixson, D.R.1
De La Morena, M.L.2
Stathopoulos, C.3
St. Geme III, J.W.4
-
20
-
-
0032246189
-
The Haemophilus influenzae Hap serine protease promotes adherence and microcolony formation, potentiated by a soluble host protein
-
Hendrixson DR, St Geme III JW (1998) The Haemophilus influenzae Hap serine protease promotes adherence and microcolony formation, potentiated by a soluble host protein. Mol Cell 2: 841-850 (Pubitemid 128378991)
-
(1998)
Molecular Cell
, vol.2
, Issue.6
, pp. 841-850
-
-
Hendrixson, D.R.1
St. Geme III, J.W.2
-
21
-
-
0014738144
-
Defined nongrowth media for stage II development of competence in Haemophilus influen-zae
-
Herriott RM, Meyer EM, Vogt M (1970) Defined nongrowth media for stage II development of competence in Haemophilus influen-zae. J Bacteriol 101 : 517-524
-
(1970)
J Bacteriol
, vol.101
, pp. 517-524
-
-
Herriott, R.M.1
Meyer, E.M.2
Vogt, M.3
-
22
-
-
77954627688
-
Architecture of Eph receptor clusters
-
Himanen JP, Yermekbayeva L, Janes PW, Walker JR, Xu K, Atapattu L, Rajashankar KR, Mensinga A, Lackmann M, Nikolov DB, Dhe-Paganon S (2010) Architecture of Eph receptor clusters. Proc Natl Acad Sci USA 107 (24): 10860-10865
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.24
, pp. 10860-10865
-
-
Himanen, J.P.1
Yermekbayeva, L.2
Janes, P.W.3
Walker, J.R.4
Xu, K.5
Atapattu, L.6
Rajashankar, K.R.7
Mensinga, A.8
Lackmann, M.9
Nikolov, D.B.10
Dhe-Paganon, S.11
-
23
-
-
65649092581
-
Active-site gating regulates substrate selectivity in a chymotrypsin-like serine protease the structure of haemophilus influenzae immunoglobulin A1 protease
-
Johnson TA, Qiu J, Plaut AG, Holyoak T (2009) Active-site gating regulates substrate selectivity in a chymotrypsin-like serine protease the structure of haemophilus influenzae immunoglobulin A1 protease. J Mol Biol 389: 559-574
-
(2009)
J Mol Biol
, vol.389
, pp. 559-574
-
-
Johnson, T.A.1
Qiu, J.2
Plaut, A.G.3
Holyoak, T.4
-
24
-
-
37349047429
-
The autodisplay story, from discovery to biotechnical and biomedical applications
-
DOI 10.1128/MMBR.00011-07
-
Jose J, Meyer TF (2007) The autodisplay story, from discovery to biotechnical and biomedical applications. Microbiol Mol Biol Rev 71: 600-619 (Pubitemid 350309179)
-
(2007)
Microbiology and Molecular Biology Reviews
, vol.71
, Issue.4
, pp. 600-619
-
-
Jose, J.1
Meyer, T.F.2
-
25
-
-
70350461454
-
Structural determinants of autoproteolysis of the Haemophilus influenzae Hap autotranspor-ter
-
Kenjale R, Meng G, Fink DL, Juehne T, Ohashi T, Erickson HP, Waksman G, St Geme III JW (2009) Structural determinants of autoproteolysis of the Haemophilus influenzae Hap autotranspor-ter. Infect Immun 77 (11): 4704-4713
-
(2009)
Infect Immun
, vol.77
, Issue.11
, pp. 4704-4713
-
-
Kenjale, R.1
Meng, G.2
Fink, D.L.3
Juehne, T.4
Ohashi, T.5
Erickson, H.P.6
Waksman, G.7
St Geme Iii, J.W.8
-
26
-
-
33745875356
-
Self-associating autotransporters, SAATs: Functional and structural similarities
-
DOI 10.1016/j.ijmm.2005.10.002, PII S1438422106000889
-
Klemm P, Vejborg RM, Sherlock O (2006) Self-associating autotran-sporters, SAATs: functional and structural similarities. Int J Med Microbiol 296: 187-195 (Pubitemid 44040977)
-
(2006)
International Journal of Medical Microbiology
, vol.296
, Issue.4-5
, pp. 187-195
-
-
Klemm, P.1
Vejborg, R.M.2
Sherlock, O.3
-
27
-
-
42449114899
-
Complex of human neutrophil elastase with 1/2SLPI
-
DOI 10.1107/S0909049507060670, PII S0909049507060670
-
Koizumi M, Fujino A, Fukushima K, Kamimura T, Takimoto-Kamimura M (2008) Complex of human neutrophil elastase with 1/2SLPI. J Synchrotron Radiat 15(Part 3): 308-311 (Pubitemid 351571029)
-
(2008)
Journal of Synchrotron Radiation
, vol.15
, Issue.3
, pp. 308-311
-
-
Koizumi, M.1
Fujino, A.2
Fukushima, K.3
Kamimura, T.4
Takimoto-Kamimura, M.5
-
28
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26: 283-291
-
(1993)
J Appl Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
29
-
-
58149203237
-
CDD: Specific functional annotation with the Conserved Domain Database
-
(Database issue)
-
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH et al (2009) CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37 (Database issue): D205-D210
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
Deweese-Scott, C.5
Fong, J.H.6
Geer, L.Y.7
Geer, R.C.8
Gonzales, N.R.9
Gwadz, M.10
He, S.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Liebert, C.A.16
Liu, C.17
Lu, F.18
Lu, S.19
Marchler, G.H.20
more..
-
31
-
-
78649833347
-
Role of domains within the autotransporter Hbp/Tsh
-
Nishimura K, Yoon YH, Kurihara A, Unzai S, Luirink J, Park SY, Tame JR (2010) Role of domains within the autotransporter Hbp/Tsh. Acta Crystallogr D Biol Crystallogr 66(Pt 12): 1295-1300
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 12
, pp. 1295-1300
-
-
Nishimura, K.1
Yoon, Y.H.2
Kurihara, A.3
Unzai, S.4
Luirink, J.5
Park, S.Y.6
Tame, J.R.7
-
32
-
-
0037338681
-
A conserved region within the Bordetella pertussis autotransporter BrkA is necessary for folding of its passenger domain
-
DOI 10.1046/j.1365-2958.2003.03377.x
-
Oliver DC, Huang G, Nodel E, Pleasance S, Fernandez RC (2003) A conserved region within the Bordetella pertussis autotransporter BrkA is necessary for folding of its passenger domain. Mol Microbiol 47: 1367-1383 (Pubitemid 36307858)
-
(2003)
Molecular Microbiology
, vol.47
, Issue.5
, pp. 1367-1383
-
-
Oliver, D.C.1
Huang, G.2
Nodel, E.3
Pleasance, S.4
Fernandez, R.C.5
-
33
-
-
20444435483
-
Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli
-
DOI 10.1074/jbc.M412885200
-
Otto BR, Sijbrandi R, Luirink J, Oudega B, Heddle JG, Mizutani K, Park SY, Tame JR (2005) Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli. J Biol Chem 280 (17): 17339-17345 (Pubitemid 41389203)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.17
, pp. 17339-17345
-
-
Otto, B.R.1
Sijbrandi, R.2
Luirink, J.3
Oudega, B.4
Heddle, J.G.5
Mizutani, K.6
Park, S.-Y.7
Tame, J.R.H.8
-
34
-
-
0028914722
-
Structural basis of substrate specificity in the serine proteases
-
Perona JJ, Craik CS (1995) Structural basis of substrate specificity in the serine proteases. Protein Sci 4: 337-360
-
(1995)
Protein Sci
, vol.4
, pp. 337-360
-
-
Perona, J.J.1
Craik, C.S.2
-
35
-
-
0030729481
-
Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold
-
DOI 10.1074/jbc.272.48.29987
-
Perona JJ, Craik CS (1997) Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold. J Biol Chem 272 (48): 29987-29990 (Pubitemid 27512189)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.48
, pp. 29987-29990
-
-
Perona, J.J.1
Craik, C.S.2
-
36
-
-
0032897059
-
Molecular determinants of the pathogenesis of disease due to non-typable Haemophilus influenzae
-
DOI 10.1016/S0168-6445(98)00039-4, PII S0168644598000394
-
Rao VK, Krasan GP, Hendrixson DR, Dawid S, St Geme III JW (1999) Molecular determinants of the pathogenesis of disease due to non-typable Haemophilus influenzae. FEMS Microbiol Rev 23: 99-129 (Pubitemid 29189244)
-
(1999)
FEMS Microbiology Reviews
, vol.23
, Issue.2
, pp. 99-129
-
-
Rao, V.K.1
Krasan, G.P.2
Hendrixson, D.R.3
Dawid, S.4
St. Geme III, J.W.5
-
37
-
-
0030834850
-
Temperature, stability, and the hydrophobic interaction
-
Schellman JA (1997) Temperature, stability, and the hydrophobic interaction. Biophys J 73: 2960-2964 (Pubitemid 27525762)
-
(1997)
Biophysical Journal
, vol.73
, Issue.6
, pp. 2960-2964
-
-
Schellman, J.A.1
-
38
-
-
0014253060
-
Repair of deoxyribonucleic acid in Haemophilus influenzae. I. X-ray sensitivity of ultraviolet-sensitive mutants and their behavior as hosts to ultraviolet-irradiated bacteriophage and transforming deoxyribonucleic acid
-
Setlow JK, Brown DC, Boling ME, Mattingly A, Gordon MP (1968) Repair of deoxyribonucleic acid in Haemophilus influenzae. I. X-ray sensitivity of ultraviolet-sensitive mutants and their behavior as hosts to ultraviolet-irradiated bacteriophage and transforming deoxyribonucleic acid. J Bacteriol 95: 546-558
-
(1968)
J Bacteriol
, vol.95
, pp. 546-558
-
-
Setlow, J.K.1
Brown, D.C.2
Boling, M.E.3
Mattingly, A.4
Gordon, M.P.5
-
39
-
-
9244250348
-
Novel roles for the AIDA adhesin from diarrheagenic Escherichia coli: Cell aggregation and biofilm formation
-
DOI 10.1128/JB.186.23.8058-8065.2004
-
Sherlock O, Schembri MA, Reisner A, Klemm P (2004) Novel roles for the AIDA adhesin from diarrheagenic Escherichia coli: cell aggregation and biofilm formation. J Bacteriol 186 (23): 8058-8065 (Pubitemid 39552517)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.23
, pp. 8058-8065
-
-
Sherlock, O.1
Schembri, M.A.2
Reisner, A.3
Klemm, P.4
-
40
-
-
16244421351
-
The TibA adhesin/invasin from enterotoxigenic Escherichia coli is self recognizing and induces bacterial aggregation and biofilm formation
-
DOI 10.1128/IAI.73.4.1954-1963.2005
-
Sherlock O, Vejborg RM, Klemm P (2005) The TibA adhesin/invasin from enterotoxigenic Escherichia coli is self recognizing and induces bacterial aggregation and biofilm formation. Infect Immun 73: 1954-1963 (Pubitemid 40470792)
-
(2005)
Infection and Immunity
, vol.73
, Issue.4
, pp. 1954-1963
-
-
Sherlock, O.1
Vejborg, R.M.2
Klemm, P.3
-
41
-
-
0035859467
-
Antibiotic resistance of bacteria in biofilms
-
DOI 10.1016/S0140-6736(01)05321-1
-
Stewart PS, Costerton JW (2001) Antibiotic resistance of bacteria in biofilms. Lancet 358: 135-138 (Pubitemid 32709857)
-
(2001)
Lancet
, vol.358
, Issue.9276
, pp. 135-138
-
-
Stewart, P.S.1
Costerton, J.W.2
|