메뉴 건너뛰기




Volumn 89, Issue 6, 2011, Pages 1669-1683

A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle

Author keywords

Bos indicus; Bos taurus; Gene network; Genome wide association; Reproduction; Systems biology

Indexed keywords

ANIMAL; ARTICLE; CATTLE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GENOME; GROWTH, DEVELOPMENT AND AGING; PHYSIOLOGY; SEXUAL MATURATION; SINGLE NUCLEOTIDE POLYMORPHISM; TROPIC CLIMATE;

EID: 80052658935     PISSN: 00218812     EISSN: 15253163     Source Type: Journal    
DOI: 10.2527/jas.2010-3681     Document Type: Article
Times cited : (86)

References (51)
  • 1
    • 3543119619 scopus 로고    scopus 로고
    • Pre-pubertal and postpartum anestrus in tropical zebu cattle
    • Abeygunawardena, H., and C. M. Dematawewa. 2004. Pre-pubertal and postpartum anestrus in tropical zebu cattle. Anim. Reprod. Sci. 82-83:373-387
    • (2004) Anim. Reprod. Sci , Issue.82-83 , pp. 373-387
    • Abeygunawardena, H.1    Dematawewa, C.M.2
  • 2
    • 65349085291 scopus 로고    scopus 로고
    • Global networks of functional coupling in eukaryotes from comprehensive data integration
    • Alexeyenko, A., and E. L. Sonnhammer. 2009. Global networks of functional coupling in eukaryotes from comprehensive data integration. Genome Res. 19:1107-1116
    • (2009) Genome Res , vol.19 , pp. 1107-1116
    • Alexeyenko, A.1    Sonnhammer, E.L.2
  • 3
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G. D., and C. W. Hogue. 2003. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4:2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 4
    • 66149192654 scopus 로고    scopus 로고
    • Genetics of heifer performance in 'wet' and 'dry' seasons and their relationships with steer performance in two tropical beef genotypes
    • Barwick, S. A., D. J. Johnston, H. M. Burrow, R. G. Holroyd, G. Fordyce, M. L. Wolcott, W. D. Sim, and M. T. Sullivan. 2009a. Genetics of heifer performance in 'wet' and 'dry' seasons and their relationships with steer performance in two tropical beef genotypes. Anim. Prod. Sci. 49:367-382
    • (2009) Anim. Prod. Sci , vol.49 , pp. 367-382
    • Barwick, S.A.1    Johnston, D.J.2    Burrow, H.M.3    Holroyd, R.G.4    Fordyce, G.5    Wolcott, M.L.6    Sim, W.D.7    Sullivan, M.T.8
  • 5
    • 66149170335 scopus 로고    scopus 로고
    • Genetics of steer daily and residual feed intake in two tropical beef genotypes, and relationships among intake, body composition, growth and other post-weaning measures
    • Barwick, S. A., M. L. Wolcott, D. J. Johnston, H. M. Burrow, and M. T. Sullivan. 2009b. Genetics of steer daily and residual feed intake in two tropical beef genotypes, and relationships among intake, body composition, growth and other post-weaning measures. Anim. Prod. Sci. 49:351-366
    • (2009) Anim. Prod. Sci , vol.49 , pp. 351-366
    • Barwick, S.A.1    Wolcott, M.L.2    Johnston, D.J.3    Burrow, H.M.4    Sullivan, M.T.5
  • 6
    • 77955049513 scopus 로고    scopus 로고
    • Gnrh signaling, the gonadotrope and endocrine control of fertility
    • Bliss, S. P., A. M. Navratil, J. J. Xie, and M. S. Roberson. 2010. Gnrh signaling, the gonadotrope and endocrine control of fertility. Front. Neuroendocrinol. 31:322-340
    • (2010) Front. Neuroendocrinol , vol.31 , pp. 322-340
    • Bliss, S.P.1    Navratil, A.M.2    Xie, J.J.3    Roberson, M.S.4
  • 8
    • 16344389891 scopus 로고    scopus 로고
    • Permutmatrix: A graphical environment to arrange gene expression profiles in optimal linear order
    • Caraux, G., and S. Pinloche. 2005. Permutmatrix: A graphical environment to arrange gene expression profiles in optimal linear order. Bioinformatics 21:1280-1281
    • (2005) Bioinformatics , vol.21 , pp. 1280-1281
    • Caraux, G.1    Pinloche, S.2
  • 10
    • 44449152670 scopus 로고    scopus 로고
    • Gene alterations by peroxisome proliferator-activated receptor gamma agonists in human colorectal cancer cells
    • Cekanova, M., J. S. Yuan, X. Li, K. Kim, and S. J. Baek. 2008. Gene alterations by peroxisome proliferator-activated receptor gamma agonists in human colorectal cancer cells. Int. J. Oncol. 32:809-819
    • (2008) Int. J. Oncol , vol.32 , pp. 809-819
    • Cekanova, M.1    Yuan, J.S.2    Li, X.3    Kim, K.4    Baek, S.J.5
  • 11
    • 77956490875 scopus 로고    scopus 로고
    • The evolution of tropical adaptation: Comparing taurine and zebu cattle
    • Chan, E. K., S. H. Nagaraj, and A. Reverter. 2010. The evolution of tropical adaptation: Comparing taurine and zebu cattle. Anim. Genet. 41:467-477
    • (2010) Anim. Genet , vol.41 , pp. 467-477
    • Chan, E.K.1    Nagaraj, S.H.2    Reverter, A.3
  • 12
    • 0030276230 scopus 로고    scopus 로고
    • Breed and other effects on reproductive traits and breeding soundness categorization in young beef bulls in Florida
    • Chenoweth, P. J., C. C. Chase Jr., M. J. Thatcher, C. J. Wilcox, and R. E. Larsen. 1996. Breed and other effects on reproductive traits and breeding soundness categorization in young beef bulls in Florida. Theriogenology 46:1159-1170
    • (1996) Theriogenology , vol.46 , pp. 1159-1170
    • Chenoweth, P.J.1    Chase Jr., C.C.2    Thatcher, M.J.3    Wilcox, C.J.4    Larsen, R.E.5
  • 13
    • 33745907863 scopus 로고    scopus 로고
    • Development of GABA and glutamate signaling at the GnRH neuron in relation to puberty
    • Clarkson, J., and A. E. Herbison. 2006. Development of GABA and glutamate signaling at the GnRH neuron in relation to puberty. Mol. Cell. Endocrinol. 254:32-38
    • (2006) Mol. Cell. Endocrinol , vol.254 , pp. 32-38
    • Clarkson, J.1    Herbison, A.E.2
  • 15
    • 60849139395 scopus 로고    scopus 로고
    • GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
    • Eden, E., R. Navon, I. Steinfeld, D. Lipson, and Z. Yakhini. 2009. GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10:48.
    • (2009) BMC Bioinformatics , vol.10 , pp. 48
    • Eden, E.1    Navon, R.2    Steinfeld, I.3    Lipson, D.4    Yakhini, Z.5
  • 18
    • 80052689621 scopus 로고    scopus 로고
    • A new method for exploring genome-wide associations applied to cattle puberty. 9th World Congress on Genetics Applied to Livestock Production
    • Leipzig, Germany
    • Fortes, M. R. S., A. Reverter, Y. Zhang, E. Collis, S. Nagaraj, N. N. Jonsson, W. Barris, and R. Hawken. 2010b. A new method for exploring genome-wide associations applied to cattle puberty. 9th World Congress on Genetics Applied to Livestock Production. German Soc. Anim. Sci., Leipzig, Germany.
    • (2010) German Soc. Anim. Sci
    • Fortes, M.R.S.1    Reverter, A.2    Zhang, Y.3    Collis, E.4    Nagaraj, S.5    Jonsson, N.N.6    Barris, W.7    Hawken, R.8
  • 19
    • 33750585057 scopus 로고    scopus 로고
    • Effect of timing of feeding a high-concentrate diet on growth and attainment of puberty in early-weaned heifers
    • Gasser, C. L., E. J. Behlke, D. E. Grum, and M. L. Day. 2006. Effect of timing of feeding a high-concentrate diet on growth and attainment of puberty in early-weaned heifers. J. Anim. Sci. 84:3118-3122
    • (2006) J. Anim. Sci , vol.84 , pp. 3118-3122
    • Gasser, C.L.1    Behlke, E.J.2    Grum, D.E.3    Day, M.L.4
  • 20
    • 66249122107 scopus 로고    scopus 로고
    • Mapping genes for complex traits in domestic animals and their use in breeding programmes
    • Goddard, M. E., and B. J. Hayes. 2009. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat. Rev. Genet. 10:381-391
    • (2009) Nat. Rev. Genet , vol.10 , pp. 381-391
    • Goddard, M.E.1    Hayes, B.J.2
  • 21
    • 48749118679 scopus 로고    scopus 로고
    • Nell2, a neuron-specific EGF-like protein, is selectively expressed in glutamatergic neurons and contributes to the glutamatergic control of GnRH neurons at puberty
    • Ha, C. M., J. Choi, E. J. Choi, M. E. Costa, B. J. Lee, and S. R. Ojeda. 2008. Nell2, a neuron-specific EGF-like protein, is selectively expressed in glutamatergic neurons and contributes to the glutamatergic control of GnRH neurons at puberty. Neuroendocrinology 88:199-211
    • (2008) Neuroendocrinology , vol.88 , pp. 199-211
    • Ha, C.M.1    Choi, J.2    Choi, E.J.3    Costa, M.E.4    Lee, B.J.5    Ojeda, S.R.6
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., B. T. Sherman, and R. A. Lempicki. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4:44-57
    • (2009) Nat. Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 26
    • 67049159812 scopus 로고    scopus 로고
    • A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation
    • Hudson, N. J., A. Reverter, and B. P. Dalrymple. 2009a. A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation. PLOS Comput. Biol. 5:e1000382.
    • (2009) PLOS Comput. Biol , vol.5
    • Hudson, N.J.1    Reverter, A.2    Dalrymple, B.P.3
  • 27
    • 70349668879 scopus 로고    scopus 로고
    • Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks
    • Hudson, N. J., A. Reverter, Y. H. Wang, P. L. Greenwood, and B. P. Dalrymple. 2009b. Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks. PLoS ONE 4:e7249.
    • (2009) PLoS ONE , vol.4
    • Hudson, N.J.1    Reverter, A.2    Wang, Y.H.3    Greenwood, P.L.4    Dalrymple, B.P.5
  • 29
    • 66149184634 scopus 로고    scopus 로고
    • Genetics of heifer puberty in two tropical beef genotypes in northern Australia and associations with heifer-and steer-production traits
    • Johnston, D. J., S. A. Barwick, N. J. Corbet, G. Fordyce, R. G. Holroyd, P. J. Williams, and H. M. Burrow. 2009. Genetics of heifer puberty in two tropical beef genotypes in northern Australia and associations with heifer-and steer-production traits. Anim. Prod. Sci. 49:399-412
    • (2009) Anim. Prod. Sci , vol.49 , pp. 399-412
    • Johnston, D.J.1    Barwick, S.A.2    Corbet, N.J.3    Fordyce, G.4    Holroyd, R.G.5    Williams, P.J.6    Burrow, H.M.7
  • 30
    • 77951132063 scopus 로고    scopus 로고
    • Growth characteristics, reproductive performance, and evaluation of their associative relationships in Brangus cattle managed in a Chihuahuan desert production system
    • Luna-Nevarez, P., D. W. Bailey, C. C. Bailey, D. M. VanLeeuwen, R. M. Enns, G. A. Silver, K. L. DeAtley, and M. G. Thomas. 2010. Growth characteristics, reproductive performance, and evaluation of their associative relationships in Brangus cattle managed in a Chihuahuan desert production system. J. Anim. Sci. 88:1891-1904
    • (2010) J. Anim. Sci , vol.88 , pp. 1891-1904
    • Luna-Nevarez, P.1    Bailey, D.W.2    Bailey, C.C.3    Vanleeuwen, D.M.4    Enns, R.M.5    Silver, G.A.6    Deatley, K.L.7    Thomas, M.G.8
  • 31
    • 24044440971 scopus 로고    scopus 로고
    • Bingo: A cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere, S., K. Heymans, and M. Kuiper. 2005. Bingo: A cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21:3448-3449
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 33
    • 0004031293 scopus 로고
    • Introduction to the Theory of Statistics
    • New York, NY 3rd ed McGraw-Hill Publishing Company
    • Mood, A. M., A. G. Graybill, and D. C. Boes. 1974. Introduction to the Theory of Statistics. 3rd ed. McGraw-Hill Publishing Company, New York, NY.
    • (1974)
    • Mood, A.M.1    Graybill, A.G.2    Boes, D.C.3
  • 35
    • 84925881138 scopus 로고    scopus 로고
    • New concepts on the control of the onset of puberty
    • Ojeda, S. R., A. Lomniczi, U. Sandau, and V. Matagne. 2010b. New concepts on the control of the onset of puberty. Endocr. Dev. 17:44-51
    • (2010) Endocr. Dev , vol.17 , pp. 44-51
    • Ojeda, S.R.1    Lomniczi, A.2    Sandau, U.3    Matagne, V.4
  • 36
    • 45549107581 scopus 로고    scopus 로고
    • Glial-gonadotrophin hormone (GnRH) neurone interactions in the median eminence and the control of GnRH secretion
    • Ojeda, S. R., A. Lomniczi, and U. S. Sandau. 2008. Glial-gonadotrophin hormone (GnRH) neurone interactions in the median eminence and the control of GnRH secretion. J. Neuroendocrinol. 20:732-742
    • (2008) J. Neuroendocrinol , vol.20 , pp. 732-742
    • Ojeda, S.R.1    Lomniczi, A.2    Sandau, U.S.3
  • 38
    • 66149180790 scopus 로고    scopus 로고
    • Genetics of adaptive traits in heifers and their relationship to growth, pubertal and carcass traits in two tropical beef cattle genotypes
    • Prayaga, K. C., N. J. Corbet, D. J. Johnston, M. L. Wolcott, G. Fordyce, and H. M. Burrow. 2009. Genetics of adaptive traits in heifers and their relationship to growth, pubertal and carcass traits in two tropical beef cattle genotypes. Anim. Prod. Sci. 49:413-425
    • (2009) Anim. Prod. Sci , vol.49 , pp. 413-425
    • Prayaga, K.C.1    Corbet, N.J.2    Johnston, D.J.3    Wolcott, M.L.4    Fordyce, G.5    Burrow, H.M.6
  • 40
    • 54949156075 scopus 로고    scopus 로고
    • Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks
    • Reverter, A., and E. K. Chan. 2008. Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks. Bioinformatics 24:2491-2497
    • (2008) Bioinformatics , vol.24 , pp. 2491-2497
    • Reverter, A.1    Chan, E.K.2
  • 41
    • 77951944593 scopus 로고    scopus 로고
    • Regulatory impact factors: Unravelling the transcriptional regulation of complex traits from expression data
    • Reverter, A., N. J. Hudson, S. H. Nagaraj, M. Perez-Enciso, and B. P. Dalrymple. 2010. Regulatory impact factors: Unravelling the transcriptional regulation of complex traits from expression data. Bioinformatics 26:896-904
    • (2010) Bioinformatics , vol.26 , pp. 896-904
    • Reverter, A.1    Hudson, N.J.2    Nagaraj, S.H.3    Perez-Enciso, M.4    Dalrymple, B.P.5
  • 42
    • 35748946609 scopus 로고    scopus 로고
    • Follicular dynamics in heifers during pre-pubertal and pubertal period kept under two levels of dietary energy intake
    • Romano, M. A., V. H. Barnabe, J. P. Kastelic, C. A. de Oliveira, and R. M. Romano. 2007. Follicular dynamics in heifers during pre-pubertal and pubertal period kept under two levels of dietary energy intake. Reprod. Domest. Anim. 42:616-622
    • (2007) Reprod. Domest. Anim , vol.42 , pp. 616-622
    • Romano, M.A.1    Barnabe, V.H.2    Kastelic, J.P.3    de Oliveira, C.A.4    Romano, R.M.5
  • 43
    • 38049148026 scopus 로고    scopus 로고
    • DAVID knowledgebase: A gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    • Sherman, B. T., D. W. Huang, Q. N. Tan, Y. J. Guo, S. Bour, D. Liu, R. Stephens, M. W. Baseler, H. C. Lane, and R. A. Lempicki. 2007. DAVID knowledgebase: A gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinformatics 8:426.
    • (2007) BMC Bioinformatics , vol.8 , pp. 426
    • Sherman, B.T.1    Huang, D.W.2    Tan, Q.N.3    Guo, Y.J.4    Bour, S.5    Liu, D.6    Stephens, R.7    Baseler, M.W.8    Lane, H.C.9    Lempicki, R.A.10
  • 44
    • 0001745298 scopus 로고
    • The interpretation of interaction in contingency tables
    • Simpson, E. H. 1951. The interpretation of interaction in contingency tables. J. R. Stat. Soc. Series B Stat. Methodol. 13:238-241
    • (1951) J. R. Stat. Soc. Series B Stat. Methodol , vol.13 , pp. 238-241
    • Simpson, E.H.1
  • 45
    • 80052653976 scopus 로고    scopus 로고
    • Relationships between hypothalamic gene expression and the resumption of ovulation in postpartum beef cows
    • PhD Thesis The University of Queensland, St. Lucia, Brisbane, Australia
    • Suhaimi, A. H. M. 2009. Relationships between hypothalamic gene expression and the resumption of ovulation in postpartum beef cows. PhD Thesis. The University of Queensland, St. Lucia, Brisbane, Australia.
    • (2009)
    • Suhaimi, A.H.M.1
  • 46
    • 34547110828 scopus 로고    scopus 로고
    • A new approach for using genome scans to detect recent positive selection in the human genome
    • Tang, K., K. R. Thornton, and M. Stoneking. 2007. A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biol. 5:e171.
    • (2007) PLoS Biol , vol.5
    • Tang, K.1    Thornton, K.R.2    Stoneking, M.3
  • 47
    • 33645243595 scopus 로고    scopus 로고
    • Role of GABA in the mechanism of the onset of puberty in non-human primates
    • Terasawa, E. 2005. Role of GABA in the mechanism of the onset of puberty in non-human primates. Int. Rev. Neurobiol. 71:113-129
    • (2005) Int. Rev. Neurobiol , vol.71 , pp. 113-129
    • Terasawa, E.1
  • 48
    • 62849096643 scopus 로고    scopus 로고
    • Shadows of complexity: What biological networks reveal about epistasis and pleiotropy
    • Tyler, A. L., F. W. Asselbergs, S. M. Williams, and J. H. Moore. 2009. Shadows of complexity: What biological networks reveal about epistasis and pleiotropy. Bioessays 31:220-227
    • (2009) Bioessays , vol.31 , pp. 220-227
    • Tyler, A.L.1    Asselbergs, F.W.2    Williams, S.M.3    Moore, J.H.4
  • 51
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population-structure
    • Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population-structure. Evolution 38:1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.