Erratum: Epigenetic regulation of DNA methyltransferases: DNMT1 and DNMT3B in gliomas (Journal of Neuro-Oncology DOI: 10.1007/s11060-010-0520-2);Epigenetic regulation of DNA methyltransferases: DNMT1 and DNMT3B in gliomas

Journal of Neuro-Oncology

Volumn 104, Issue 2, 2011, Pages 483-494

  Rajendran, Ganeshkumar ^a   Shanmuganandam, Karthik ^a   Bendre, Ameya ^a   Mujumdar, Dattatreya ^b   Goel, Abhay ^b   Shiras, Anjali ^a  

^a NATIONAL CENTRE FOR CELL SCIENCE   (India)

^b KEM HOSPITAL   (India)

Author keywords

Acetylation; ChIP assay; DNA methylation; Histone modifications; MS PCR; Tumor suppressor genes

Indexed keywords

AZACITIDINE; DNA METHYLTRANSFERASE 1; DNA METHYLTRANSFERASE 3B; HISTONE H3; HISTONE H4; PHOSPHATIDYLINOSITOL 3,4,5 TRISPHOSPHATE 3 PHOSPHATASE; PROTEIN P21;

ARTICLE; BRAIN TISSUE; CELL CYCLE REGULATION; CONTROLLED STUDY; CPG ISLAND; DNA METHYLATION; DNA METHYLTRANSFERASE 3B GENE; DNA METHYLTRANSFERASE I GENE; ENZYME INHIBITION; EPIGENETICS; EUCHROMATIN; GENE INACTIVATION; GENETIC REGULATION; GENOMIC INSTABILITY; GLIOMA; HETEROCHROMATIN; HISTONE MODIFICATION; HUMAN; HUMAN CELL; HUMAN TISSUE; PROMOTER REGION; PROTEIN EXPRESSION; TRANSCRIPTION REGULATION; TUMOR SUPPRESSOR GENE;

EID: 80052641133     PISSN: 0167594X     EISSN: 15737373     Source Type: Journal    
DOI: 10.1007/s11060-011-0543-3     Document Type: Erratum

References (46)

1. SR Williams BW Joos JC Parker JR Parker 2008 Papillary glioneuronal tumor: a case report and review of the literature Ann Clin Lab Sci 38 287 292 18715860
2. EA Maher FB Furnari RM Bachoo DH Rowitch DN Louis WK Cavenee RA DePinho 2001 Malignant glioma: genetics and biology of a grave matter Genes Dev 15 1311 1333 11390353 1:CAS:528:DC%2BD3MXktlSntbw%3D 10.1101/gad.891601 (Pubitemid 32524640)
3. PB Dirks 2008 Brain tumour stem cells: the undercurrents of human brain cancer and their relationship to neural stem cells Philos Trans R Soc Lond B Biol Sci 363 139 152 17309866 1:CAS:528:DC%2BD1cXhs1Oisb4%3D 10.1098/rstb.2006.2017 (Pubitemid 350174572)
4. A Shiras A Bhosale V Shepal R Shukla VS Baburao K Prabhakara P Shastry 2003 A unique model system for tumor progression in GBM comprising two developed human neuro-epithelial cell lines with differential transforming potential and coexpressing neuronal and glial markers Neoplasia 5 520 532 14965445 1:CAS:528:DC%2BD2cXht1Wgtrk%3D (Pubitemid 38045089)
5. A Shiras ST Chettiar V Shepal G Rajendran GR Prasad P Shastry 2007 Spontaneous transformation of human adult nontumorigenic stem cells to cancer stem cells is driven by genomic instability in a human model of glioblastoma Stem Cells 25 1478 1489 17332509 1:CAS:528:DC%2BD2sXntlWrt7Y%3D 10.1634/stemcells.2006-0585 (Pubitemid 47106016)
6. AP Feinberg CW Gehrke KC Kuo M Ehrlich 1988 Reduced genomic 5-methylcytosine content in human colonic neoplasia Cancer Res 48 1159 1161 3342396 1:CAS:528:DyaL1cXhsVyjtbw%3D (Pubitemid 18075525)
7. PA Jones 1996 DNA methylation errors and cancer Cancer Res 56 2463 2467 8653676 1:CAS:528:DyaK28XjtlCgt7Y%3D (Pubitemid 26170673)
8. JL Blanc M Wager J Guilhot S Kusy B Bataille T Chantereau F Lapierre CJ Larsen L Karayan-Tapon 2004 Correlation of clinical features and methylation status of MGMT gene promoter in glioblastomas J Neurooncol 68 275 283 15332332 1:STN:280:DC%2BD2cvislSmsQ%3D%3D 10.1023/B:NEON.0000033385.37098.85 (Pubitemid 38878263)
9. N Baeza M Weller Y Yonekawa P Kleihues H Ohgaki 2003 PTEN methylation and expression in glioblastomas Acta Neuropathol 106 479 485 12904991 1:CAS:528:DC%2BD3sXnvFalt78%3D 10.1007/s00401-003-0748-4 (Pubitemid 37265852)
10. D Yin D Xie WK Hofmann CW Miller KL Black HP Koeffler 2002 Methylation, expression, and mutation analysis of the cell cycle control genes in human brain tumors Oncogene 21 8372 8378 12447702 1:CAS:528:DC%2BD38XovVGms78%3D 10.1038/sj.onc.1206031 (Pubitemid 35477879)
11. N Horiguchi H Takayama M Toyoda T Otsuka T Fukusato G Merlino H Takagi M Mori 2002 Hepatocyte growth factor promotes hepatocarcinogenesis through c-Met autocrine activation and enhanced angiogenesis in transgenic mice treated with diethylnitrosamine Oncogene 21 1791 1799 11896611 1:CAS:528:DC%2BD38Xis1ahtb8%3D 10.1038/sj.onc.1205248 (Pubitemid 34259181)
12. JF Costello MS Berger HS Huang WK Cavenee 1996 Silencing of p16/CDKN2 expression in human gliomas by methylation and chromatin condensation Cancer Res 56 2405 2410 8625319 1:CAS:528:DyaK28XivF2qsr0%3D (Pubitemid 26154090)
13. J Yu H Zhang J Gu S Lin J Li W Lu Y Wang J Zhu 2004 Methylation profiles of thirty four promoter-CpG islands and concordant methylation behaviours of sixteen genes that may contribute to carcinogenesis of astrocytoma BMC Cancer 4 65 15367334 10.1186/1471-2407-4-65 (Pubitemid 40180289)
14. M Gonzalez MV Mateos R Garcia-Sanz A Balanzategui R Lopez-Perez MC Chillon D Gonzalez I Alaejos JF San Miguel 2000 De novo methylation of tumor suppressor gene p16/INK4a is a frequent finding in multiple myeloma patients at diagnosis Leukemia 14 183 187 10637494 1:CAS:528:DC%2BD3cXhtV2ntbw%3D 10.1038/sj.leu.2401617 (Pubitemid 30068390)
15. M Okano DW Bell DA Haber E Li 1999 DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development Cell 99 247 257 10555141 1:CAS:528:DyaK1MXnt1Gqsrc%3D 10.1016/S0092-8674(00)81656-6 (Pubitemid 29519904)
16. T Etoh Y Kanai S Ushijima T Nakagawa Y Nakanishi M Sasako S Kitano S Hirohashi 2004 Increased DNA methyltransferase 1 (DNMT1) protein expression correlates significantly with poorer tumor differentiation and frequent DNA hypermethylation of multiple CpG islands in gastric cancers Am J Pathol 164 689 699 14742272 1:CAS:528:DC%2BD2cXhsFGqsbk%3D 10.1016/S0002-9440(10)63156-2 (Pubitemid 38364682)
17. H Fan ZJ Zhao J Cheng XW Su QX Wu YF Shan 2009 Overexpression of DNA methyltransferase 1 and its biological significance in primary hepatocellular carcinoma World J Gastroenterol 15 2020 2026 19399937 1:CAS:528: DC%2BD1MXpsF2ku7k%3D 10.3748/wjg.15.2020
18. I Girault S Tozlu R Lidereau I Bieche 2003 Expression analysis of DNA methyltransferases 1, 3A, and 3B in sporadic breast carcinomas Clin Cancer Res 9 4415 4422 14555514 1:CAS:528:DC%2BD3sXotVShsbs%3D (Pubitemid 37248399)
19. Y Kanai S Ushijima Y Kondo Y Nakanishi S Hirohashi 2001 DNA methyltransferase expression and DNA methylation of CPG islands and peri-centromeric satellite regions in human colorectal and stomach cancers Int J Cancer 91 205 212 11146446 1:CAS:528:DC%2BD3MXot1Kjtw%3D%3D 10.1002/1097-0215(200002)9999:9999<::AID-IJC1040>3.0.CO;2-2 (Pubitemid 32041741)
20. DF Peng Y Kanai M Sawada S Ushijima N Hiraoka S Kitazawa S Hirohashi 2006 DNA methylation of multiple tumor-related genes in association with overexpression of DNA methyltransferase 1 (DNMT1) during multistage carcinogenesis of the pancreas Carcinogenesis 27 1160 1168 16537562 1:CAS:528:DC%2BD28XmsVOku7Y%3D 10.1093/carcin/bgi361 (Pubitemid 43985431)
21. CM Koch RM Andrews P Flicek SC Dillon U Karaoz GK Clelland S Wilcox DM Beare JC Fowler P Couttet KD James GC Lefebvre AW Bruce OM Dovey PD Ellis P Dhami CF Langford Z Weng E Birney NP Carter D Vetrie I Dunham 2007 The landscape of histone modifications across 1% of the human genome in five human cell lines Genome Res 17 691 707 17567990 1:CAS:528:DC%2BD2sXntVSjs7w%3D 10.1101/gr.5704207 (Pubitemid 46919707)
22. TY Roh G Wei CM Farrell K Zhao 2007 Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns Genome Res 17 74 81 17135569 1:CAS:528:DC%2BD2sXms1Khuw%3D%3D 10.1101/gr.5767907 (Pubitemid 46041668)
23. R Medina M van der Deen A Miele-Chamberland RL Xie AJ van Wijnen JL Stein GS Stein 2007 The HiNF-P/p220NPAT cell cycle signaling pathway controls nonhistone target genes Cancer Res 67 10334 10342 17974976 1:CAS:528: DC%2BD2sXht1erurzL 10.1158/0008-5472.CAN-07-1560 (Pubitemid 350070808)
24. MA Hahn T Hahn DH Lee RS Esworthy BW Kim AD Riggs FF Chu GP Pfeifer 2008 Methylation of polycomb target genes in intestinal cancer is mediated by inflammation Cancer Res 68 10280 10289 19074896 1:CAS:528:DC%2BD1cXhsV2itL%2FM 10.1158/0008-5472.CAN-08-1957
25. W Zhang SC Glockner M Guo EO Machida DH Wang H Easwaran NL Van JG Herman KE Schuebel DN Watkins N Ahuja SB Baylin 2008 Epigenetic inactivation of the canonical Wnt antagonist SRY-box containing gene 17 in colorectal cancer Cancer Res 68 2764 2772 18413743 1:CAS:528:DC%2BD1cXks1Gitbc%3D 10.1158/0008-5472.CAN- 07-6349 (Pubitemid 351556274)
26. P Novak TJ Jensen JC Garbe MR Stampfer BW Futscher 2009 Stepwise DNA methylation changes are linked to escape from defined proliferation barriers and mammary epithelial cell immortalization Cancer Res 69 5251 5258 19509227 1:CAS:528:DC%2BD1MXnt1Cjsr4%3D 10.1158/0008-5472.CAN-08-4977
27. JM Yi HC Tsai SC Glockner S Lin JE Ohm H Easwaran CD James JF Costello G Riggins CG Eberhart J Laterra AL Vescovi N Ahuja JG Herman KE Schuebel SB Baylin 2008 Abnormal DNA methylation of CD133 in colorectal and glioblastoma tumors Cancer Res 68 8094 8103 18829568 1:CAS:528:DC%2BD1cXhtF2msLvI 10.1158/0008-5472.CAN-07-6208
28. A Hermann R Goyal A Jeltsch 2004 The Dnmt1 DNA-(cytosine-C5)- methyltransferase methylates DNA processively with high preference for hemimethylated target sites J Biol Chem 279 48350 48359 15339928 1:CAS:528:DC%2BD2cXptl2nu78%3D 10.1074/jbc.M403427200 (Pubitemid 39540991)
29. Tovy A, Hofmann B, Helm M, Ankri S (2010) In vitro tRNA methylation assay with the Entamoeba histolytica DNA and tRNA methyltransferase Dnmt2 (Ehmeth) enzyme. J Vis Exp
30. CL Hsieh 1999 In vivo activity of murine de novo methyltransferases, Dnmt3a and Dnmt3b Mol Cell Biol 19 8211 8218 10567546 1:CAS:528: DyaK1MXns1ygt7Y%3D
31. I Rhee KE Bachman BH Park KW Jair RW Yen KE Schuebel H Cui AP Feinberg C Lengauer KW Kinzler SB Baylin B Vogelstein 2002 DNMT1 and DNMT3b cooperate to silence genes in human cancer cells Nature 416 552 556 11932749 1:CAS:528:DC%2BD38XivVOnurw%3D 10.1038/416552a (Pubitemid 34288859)
32. P Chi CD Allis GG Wang 2010 Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers Nat Rev Cancer 10 457 469 20574448 1:CAS:528:DC%2BC3cXnvVShurc%3D 10.1038/nrc2876
33. M Esteller PG Corn SB Baylin JG Herman 2001 A gene hypermethylation profile of human cancer Cancer Res 61 3225 3229 11309270 1:CAS:528: DC%2BD3MXjtFSjt7g%3D (Pubitemid 32695003)
34. A Lujambio M Esteller 2007 CpG island hypermethylation of tumor suppressor microRNAs in human cancer Cell Cycle 6 1455 1459 17581274 1:CAS:528:DC%2BD2sXhtVaks7rE 10.4161/cc.6.12.4408
35. A Paliwal T Vaissiere A Krais C Cuenin MP Cros D Zaridze A Moukeria P Boffetta P Hainaut P Brennan Z Herceg 2010 Aberrant DNA methylation links cancer susceptibility locus 15q25.1 to apoptotic regulation and lung cancer Cancer Res 70 2779 2788 20332232 1:CAS:528:DC%2BC3cXktFyntrs%3D 10.1158/0008-5472.CAN-09- 4550
36. JP Issa PM Vertino J Wu S Sazawal P Celano BD Nelkin SR Hamilton SB Baylin 1993 Increased cytosine DNA-methyltransferase activity during colon cancer progression J Natl Cancer Inst 85 1235 1240 8331684 1:STN:280: DyaK3szitlWntA%3D%3D 10.1093/jnci/85.15.1235 (Pubitemid 23223530)
37. PM Vertino RW Yen J Gao SB Baylin 1996 De novo methylation of CpG island sequences in human fibroblasts overexpressing DNA (cytosine-5-)- methyltransferase Mol Cell Biol 16 4555 4565 8754856 1:CAS:528: DyaK28XksVakt78%3D (Pubitemid 26251257)
38. J Wu JP Issa J Herman DE Bassett Jr BD Nelkin SB Baylin 1993 Expression of an exogenous eukaryotic DNA methyltransferase gene induces transformation of NIH 3T3 cells Proc Natl Acad Sci USA 90 8891 8895 8415627 1:CAS:528: DyaK3sXmsVKqtLY%3D 10.1073/pnas.90.19.8891 (Pubitemid 23306416)
39. C Dulac 2010 Brain function and chromatin plasticity Nature 465 728 735 20535202 1:CAS:528:DC%2BC3cXntF2mt7w%3D 10.1038/nature09231
40. J Feng H Chang E Li G Fan 2005 Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system J Neurosci Res 79 734 746 15672446 1:CAS:528:DC%2BD2MXitFygsLg%3D 10.1002/jnr.20404 (Pubitemid 40476498)
41. N Beaulieu S Morin IC Chute MF Robert H Nguyen AR MacLeod 2002 An essential role for DNA methyltransferase DNMT3B in cancer cell survival J Biol Chem 277 28176 28181 12015329 1:CAS:528:DC%2BD38XlvFKgurY%3D 10.1074/jbc.M204734200 (Pubitemid 34966771)
42. KD Robertson E Uzvolgyi G Liang C Talmadge J Sumegi FA Gonzales PA Jones 1999 The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors Nucleic Acids Res 27 2291 2298 10325416 1:CAS:528:DyaK1MXjvVGltrg%3D 10.1093/nar/27.11.2291 (Pubitemid 29245646)
43. MF Fraga E Ballestar A Villar-Garea M Boix-Chornet J Espada G Schotta T Bonaldi C Haydon S Ropero K Petrie NG Iyer A Perez-Rosado E Calvo JA Lopez A Cano MJ Calasanz D Colomer MA Piris N Ahn A Imhof C Caldas T Jenuwein M Esteller 2005 Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer Nat Genet 37 391 400 15765097 1:CAS:528:DC%2BD2MXislCmurg%3D 10.1038/ng1531
44. JG Herman SB Baylin 2003 Gene silencing in cancer in association with promoter hypermethylation N Engl J Med 349 2042 2054 14627790 1:CAS:528:DC%2BD3sXptFKmu7s%3D 10.1056/NEJMra023075 (Pubitemid 37448928)
45. JK Wiencke S Zheng N Jelluma T Tihan S Vandenberg T Tamguney R Baumber R Parsons KR Lamborn MS Berger MR Wrensch DA Haas-Kogan D Stokoe 2007 Methylation of the PTEN promoter defines low-grade gliomas and secondary glioblastoma NeuroOncology 9 271 279 1:CAS:528:DC%2BD2sXpt1agsLo%3D (Pubitemid 47169659)
46. C Morrissey A Martinez M Zatyka A Agathanggelou S Honorio D Astuti NV Morgan H Moch FM Richards T Kishida M Yao P Schraml F Latif ER Maher 2001 Epigenetic inactivation of the RASSF1A 3p21.3 tumor suppressor gene in both clear cell and papillary renal cell carcinoma Cancer Res 61 7277 7281 11585766 1:CAS:528:DC%2BD3MXnsVehtLs%3D (Pubitemid 32946526)