Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria

FEMS Microbiology Ecology

Volumn 78, Issue 1, 2011, Pages 129-136

  Demanèche, Sandrine ^a   Monier, Jean Michel ^a   Dugat Bony, Eric ^a   Simonet, Pascal ^a  

^a ECOLE CENTRALE DE LYON   (France)

Author keywords

Antibiotic resistance gene; GMO; HGT; Microbial ecology; Soil; Transplastomic tobacco

Indexed keywords

PLANT DNA; SPECTINOMYCIN;

ANTIBIOTICS; BACTERIUM; CHLOROPLAST; CHROMOSOME; GENE TRANSFER; GENOME; MICROBIAL ECOLOGY; PLASMID; PROBABILITY; RECOMBINATION; TOBACCO; TRANSGENIC PLANT;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIUM; CHLOROPLAST GENOME; GENETICS; GROWTH, DEVELOPMENT AND AGING; HORIZONTAL GENE TRANSFER; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; TOBACCO; TRANSGENE; TRANSGENIC PLANT;

BACTERIA; BASE SEQUENCE; DNA, PLANT; DRUG RESISTANCE, BACTERIAL; GENE TRANSFER, HORIZONTAL; GENOME, CHLOROPLAST; MOLECULAR SEQUENCE DATA; PLANTS, GENETICALLY MODIFIED; SOIL MICROBIOLOGY; SPECTINOMYCIN; TOBACCO; TRANSGENES;

BACTERIA (MICROORGANISMS); NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; PROKARYOTA;

EID: 80052611368     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2011.01126.x     Document Type: Article

References (43)

1. Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol215: 403-410.
2. Badosa E, Moreno C & Montesinos E (2004) Lack of detection of ampicillin resistance gene transfer from Bt176 transgenic corn to culturable bacteria under field conditions. FEMS Microbiol Ecol48: 169-178.
3. Bendich AJ (1987) Why do chloroplasts and mitochondria contain so many copies of their genome?Bioessays6: 279-282.
4. Binh CTT, Heuer H, Kaupenjohann M & Smalla K (2009) Diverse aadA gene cassettes on class 1 integrons introduced into soil via spread manure. Res Microbiol160: 427-433.
5. Birch-Machin I, Newell CA, Hibberd JM & Gray JC (2004) Accumulation of rotavirus VP6 protein in chloroplasts of transplastomic tobacco is limited by protein stability. Plant Biotechnol J2: 261-270.
6. Bock R (2001) Transgenic plastids in basic research and plant biotechnology. J Mol Biol312: 425-438.
7. Brigulla M & Wackernagel W (2010) Molecular aspects of gene transfer and foreign DNA acquisition in prokaryotes with regard to safety issues. Appl Microbiol Biot86: 1027-1041.
8. Ceccherini M, Poté J, Kay E, Van VT, Marechal J, Pietramellara G, Nannipieri P, Vogel TM & Simonet P (2003) Degradation and transformability of DNA from transgenic leaves. Appl Environ Microb69: 673-678.
9. Cérémonie H, Buret F, Simonet P & Vogel TM (2004) Isolation of lightning-competent soil bacteria. Appl Environ Microb70: 6342-6346.
10. Christopher DA, Shen Y, Dudley P & Tsinoremas NF (1999) Expression of a higher-plant chloroplast psbD promoter in a cyanobacterium (Synechococcus sp. strain PCC7942) reveals a conserved cis-element, designated PGT, that differentially interacts with sequence-specific binding factors during leaf development. Curr Genet35: 657-666.
11. Chu KH, Qi J, Yu Z & Anh V (2004) Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes. Mol Biol Evol21: 200-206.
12. Delwiche CF & Palmer JD (1996) Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol Biol Evol13: 873-882.
13. Demanèche S, Bertolla F, Buret F, Nalin R, Sailland A, Auriol P, Vogel TM & Simonet P (2001a) Laboratory-scale evidence for lightning-mediated gene transfer in soil. Appl Environ Microb67: 3440-3444.
14. Demanèche S, Kay E, Gourbiere F & Simonet P (2001b) Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil. Appl Environ Microb67: 2617-2621.
15. Demanèche S, Sanguin H, Poté J, Navarro E, Bernillon D, Mavingui P, Wildi W, Vogel TM & Simonet P (2008) Antibiotic-resistant soil bacteria in transgenic plant fields. P Natl Acad Sci USA105: 3957-3962.
16. de Vries J & Wackernagel W (2002) Integration of foreign DNA during natural transformation of Acinetobacter sp. by homology-facilitated illegitimate recombination. P Natl Acad Sci USA99: 2094-2099.
17. de Vries J, Herzfeld T & Wackernagel W (2004) Transfer of plastid DNA from tobacco to the soil bacterium Acinetobacter sp. by natural transformation. Mol Microbiol53: 323-334.
18. Dröge M, Pühler A & Selbitschka W (1998) Horizontal gene transfer as a biosafety issue: a natural phenomenon of public concern. J Biotechnol 64: 75-90.
19. Drury L (1996) Transformation of bacteria by electroporation. Methods Mol Biol58: 249-256.
20. Dzelzkalns VA, Owens GC & Bogorad L (1984) Chloroplast promoter driven expression of the chloramphenicol acetyl transferase gene in a cyanobacterium. Nucleic Acids Res12: 8917-8925.
21. Edwards U, Rogall T, Blöcker H, Emde M & Böttger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res17: 7843-7853.
22. Gebhard F & Smalla K (1998) Transformation of Acinetobacter sp. strain BD413 by transgenic sugar beet DNA. Appl Environ Microb64: 1550-1554.
23. Johnsborg O, Eldholm V & Håvarstein LS (2007) Natural genetic transformation: prevalence, mechanisms and function. Res Microbiol 158: 767-778.
24. Kay E, Bertolla F, Vogel TM & Simonet P (2002a) Opportunistic colonization of Ralstonia solanacearum-infected plants by Acinetobacter sp. and its natural competence development. Microb Ecol43: 291-297.
25. Kay E, Vogel TM, Bertolla F, Nalin R & Simonet P (2002b) In situ transfer of antibiotic resistance genes from transgenic (transplastomic) tobacco plants to bacteria. Appl Environ Microb68: 3345-3351.
26. Konishi T, Shinohara K, Yamada K & Sasaki Y (1996) Acetyl-CoA carboxylase in higher plants: most plants other than gramineae have both the prokaryotic and the eukaryotic forms of this enzyme. Plant Cell Physiol 37: 117-122.
27. Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM & Peterson KM (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene166: 175-176.
28. Lorenz MG & Wackernagel W (1994) Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev58: 563-602.
29. McFadden GI (2001) Chloroplast origin and integration. Plant Physiol125: 50-53.
30. Meier P & Wackernagel W (2003) Mechanisms of homology-facilitated illegitimate recombination for foreign DNA acquisition in transformable Pseudomonas stutzeri. Mol Microbiol48: 1107-1118.
31. Monier J-M, Bernillon D, Kay E, Faugier A, Rybalka O, Dessaux Y, Simonet P & Vogel TM (2007) Detection of potential transgenic plant DNA recipients among soil bacteria. Environ Biosafety Res6: 71-83.
32. Nielsen KM, Bones AM, Smalla K & van Elsas JD (1998) Horizontal gene transfer from transgenic plants to terrestrial bacteria - a rare event?FEMS Microbiol Rev22: 79-103.
33. Nielsen KM, van Elsas JD & Smalla K (2000) Transformation of Acinetobacter sp. strain BD413(pFG4DeltanptII) with transgenic plant DNA in soil microcosms and effects of kanamycin on selection of transformants. Appl Environ Microb66: 1237-1242.
34. Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM & Monier J-M (2009) Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco. Appl Environ Microb75: 3314-3322.
35. Pontiroli A, Ceccherini M, Poté J, Wildi W, Kay E, Nannipieri P, Vogel TM, Simonet P & Monier J-M (2010) Long-term persistence and bacterial transformation potential of transplastomic plant DNA in soil. Res Microbiol161: 326-334.
36. Prudhomme M, Libante V & Claverys J (2002) Homologous recombination at the border: insertion-deletions and the trapping of foreign DNA in Streptococcus pneumoniae. P Natl Acad Sci USA 99: 2100-2105.
37. Rizzi A, Pontiroli A & Brusetti L, et al. (2008) Strategy for in situ detection of natural transformation-based horizontal gene transfer events. Appl Environ Microb74: 1250-1254.
38. Srinivasan V, Nam H, Sawant AA, Headrick SI, Nguyen LT & Oliver SP (2008) Distribution of tetracycline and streptomycin resistance genes and class 1 integrons in Enterobacteriaceae isolated from dairy and nondairy farm soils. Microb Ecol55: 184-193.
39. Svab Z & Maliga P (1993) High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. P Natl Acad Sci USA90: 913-917.
40. Tennstedt T, Szczepanowski R, Krahn I, Pühler A & Schlüter A (2005) Sequence of the 68, 869bp IncP-1alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elements. Plasmid53: 218-238.
41. Tepfer D, Garcia-Gonzales R, Mansouri H, Seruga M, Message B, Leach F & Perica MC (2003) Homology-dependent DNA transfer from plants to a soil bacterium under laboratory conditions: implications in evolution and horizontal gene transfer. Transgenic Res 12: 425-437.
42. Watt VM, Ingles CJ, Urdea MS & Rutter WJ (1985) Homology requirements for recombination in Escherichia coli. P Natl Acad Sci USA82: 4768-4772.
43. Zhou F, Badillo-Corona JA, Karcher D, Gonzalez-Rabade N, Piepenburg K, Borchers A-MI, Maloney AP, Kavanagh TA, Gray JC & Bock Ret al. (2008) High-level expression of human immunodeficiency virus antigens from the tobacco and tomato plastid genomes. Plant Biotechnol J6: 897-913.