-
1
-
-
34047169728
-
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
-
Lo I, Denef VJ, VerBerkmoes NC, Shah MB, Goltsman D, et al. (2007) Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446: 537-541.
-
(2007)
Nature
, vol.446
, pp. 537-541
-
-
Lo, I.1
Denef, V.J.2
VerBerkmoes, N.C.3
Shah, M.B.4
Goltsman, D.5
-
2
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. Plos Biology 5: 398-431.
-
(2007)
Plos Biology
, vol.5
, pp. 398-431
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
-
3
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill SR, Pop M, DeBoy RT, Eckburg PB, Turnbaugh PJ, et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
DeBoy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
-
4
-
-
70349941131
-
Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat
-
Hewson I, Paerl RW, Tripp HJ, Zehr JP, Karl DM, (2009) Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat. Limnology and Oceanography 54: 1981-1994.
-
(2009)
Limnology and Oceanography
, vol.54
, pp. 1981-1994
-
-
Hewson, I.1
Paerl, R.W.2
Tripp, H.J.3
Zehr, J.P.4
Karl, D.M.5
-
5
-
-
60849095134
-
Quantifying environmental adaptation of metabolic pathways in metagenomics
-
Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, et al. (2009) Quantifying environmental adaptation of metabolic pathways in metagenomics. Proceedings of the National Academy of Sciences of the United States of America 106: 1374-1379.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 1374-1379
-
-
Gianoulis, T.A.1
Raes, J.2
Patel, P.V.3
Bjornson, R.4
Korbel, J.O.5
-
6
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, et al. (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. 450: 560-569.
-
(2007)
, vol.450
, pp. 560-569
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
-
7
-
-
58149492429
-
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes
-
Novichkov PS, Wolf YI, Dubchak I, Koonin EV, (2009) Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. Journal of Bacteriology 191: 65-73.
-
(2009)
Journal of Bacteriology
, vol.191
, pp. 65-73
-
-
Novichkov, P.S.1
Wolf, Y.I.2
Dubchak, I.3
Koonin, E.V.4
-
8
-
-
34548440667
-
Genes under positive selection in Escherichia coli
-
Petersen L, Bollback JP, Dimmic M, Hubisz M, Nielsen R, (2007) Genes under positive selection in Escherichia coli. Genome Research 17: 1336-1343.
-
(2007)
Genome Research
, vol.17
, pp. 1336-1343
-
-
Petersen, L.1
Bollback, J.P.2
Dimmic, M.3
Hubisz, M.4
Nielsen, R.5
-
9
-
-
0018857156
-
The evolution of genes: the chicken preproinsulin gene
-
Perler F, Efstratiadis A, Lomedico P, Gilbert W, Kolodner R, et al. (1980) The evolution of genes: the chicken preproinsulin gene. Cell 20: 555-566.
-
(1980)
Cell
, vol.20
, pp. 555-566
-
-
Perler, F.1
Efstratiadis, A.2
Lomedico, P.3
Gilbert, W.4
Kolodner, R.5
-
10
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R, Yang Z, (1998) Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936.
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
11
-
-
0023764283
-
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
-
Hughes AL, Nei M, (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170.
-
(1988)
Nature
, vol.335
, pp. 167-170
-
-
Hughes, A.L.1
Nei, M.2
-
12
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
Li W-H, Wu C-I, Luo C-C, (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Molecular Biology and Evolution 2: 150-174.
-
(1985)
Molecular Biology and Evolution
, vol.2
, pp. 150-174
-
-
Li, W.-H.1
Wu, C.-I.2
Luo, C.-C.3
-
14
-
-
78651159254
-
The genetic structure of natural populations of Drosophila melanogaster. I. Spontaneous mutation rate of polygenes controlling viability
-
Mukai T, (1964) The genetic structure of natural populations of Drosophila melanogaster. I. Spontaneous mutation rate of polygenes controlling viability. Genetics 50: 1-19.
-
(1964)
Genetics
, vol.50
, pp. 1-19
-
-
Mukai, T.1
-
15
-
-
0015405272
-
Mutation rate and dominance of genes affecting viability in Drosophila melanogaster
-
Mukai T, Chigusa SI, Mettler LE, Crow JF, (1972) Mutation rate and dominance of genes affecting viability in Drosophila melanogaster. Genetics 72: 335-355.
-
(1972)
Genetics
, vol.72
, pp. 335-355
-
-
Mukai, T.1
Chigusa, S.I.2
Mettler, L.E.3
Crow, J.F.4
-
16
-
-
0033611501
-
High genomic deleterious mutation rates in hominids
-
Eyre-Walker A, Keightley PD, (1999) High genomic deleterious mutation rates in hominids. Nature 397: 344-347.
-
(1999)
Nature
, vol.397
, pp. 344-347
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
17
-
-
33846923050
-
Genome dynamics in a natural archaeal population
-
Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, et al. (2007) Genome dynamics in a natural archaeal population. Proceedings of the National Academy of Sciences of the United States of America 104: 1883-1888.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 1883-1888
-
-
Allen, E.E.1
Tyson, G.W.2
Whitaker, R.J.3
Detter, J.C.4
Richardson, P.M.5
-
18
-
-
48349103531
-
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
-
Simmons SL, DiBartolo G, Denef VJ, Goltsman DSA, Thelen MP, et al. (2008) Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biology 6: e177.
-
(2008)
PLoS Biology
, vol.6
-
-
Simmons, S.L.1
DiBartolo, G.2
Denef, V.J.3
Goltsman, D.S.A.4
Thelen, M.P.5
-
19
-
-
57749176901
-
Environmental sequence data from the Sargasso Sea reveal that characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift
-
Hu J, Blanchard JL, (2009) Environmental sequence data from the Sargasso Sea reveal that characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift. Molecular Biology and Evolution 26: 5-13.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 5-13
-
-
Hu, J.1
Blanchard, J.L.2
-
20
-
-
68549085316
-
Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre
-
Konstantinidis KT, Braff J, Karl DM, Delong EF, (2009) Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Applied and Environmental Microbiology 75: 5345-5355.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5345-5355
-
-
Konstantinidis, K.T.1
Braff, J.2
Karl, D.M.3
Delong, E.F.4
-
21
-
-
14544275616
-
A genetic algorithm approach to detecting lineage-specific variation in selection pressure
-
Kosakovsky Pond SL, Frost SDW, (2005) A genetic algorithm approach to detecting lineage-specific variation in selection pressure. Molecular Biology and Evolution 22: 478-485.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 478-485
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.W.2
-
22
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T, (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 3: 418-426.
-
(1986)
Molecular Biology and Evolution
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
23
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Yang Z, (1998) Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Molecular Biology and Evolution 15: 568-573.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 568-573
-
-
Yang, Z.1
-
24
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Yang Z, Nielsen R, (2002) Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Molecular Biology and Evolution 19: 908-917.
-
(2002)
Molecular Biology and Evolution
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
25
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J, (2009) DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
26
-
-
68649098735
-
Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site
-
Tai V, Palenik B, (2009) Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site. The ISME Journal 3: 903-915.
-
(2009)
The ISME Journal
, vol.3
, pp. 903-915
-
-
Tai, V.1
Palenik, B.2
-
27
-
-
0028163796
-
Primary production of prochlorophytes, cyanobacteria, and eukaryotic ultraphytoplankton: measurements from flow cytometric sorting
-
Li WKW, (1994) Primary production of prochlorophytes, cyanobacteria, and eukaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnology and Oceanography 39: 169-175.
-
(1994)
Limnology and Oceanography
, vol.39
, pp. 169-175
-
-
Li, W.K.W.1
-
28
-
-
0022163921
-
The physiology and ecology of the marine cyanobacterial genus Synechococcus
-
Glover HE, (1985) The physiology and ecology of the marine cyanobacterial genus Synechococcus. Advances in Aquatic Microbiology 3: 49-107.
-
(1985)
Advances in Aquatic Microbiology
, vol.3
, pp. 49-107
-
-
Glover, H.E.1
-
29
-
-
0035025771
-
Size structure and the production/respiration balance in a coastal plankton community
-
Smith EM, Kemp WM, (2001) Size structure and the production/respiration balance in a coastal plankton community. Limnology and Oceanography 46: 473-485.
-
(2001)
Limnology and Oceanography
, vol.46
, pp. 473-485
-
-
Smith, E.M.1
Kemp, W.M.2
-
30
-
-
33846952098
-
Small phytoplankton and carbon export from the surface ocean
-
Richardson TL, Jackson GA, (2007) Small phytoplankton and carbon export from the surface ocean. Science 315: 838-840.
-
(2007)
Science
, vol.315
, pp. 838-840
-
-
Richardson, T.L.1
Jackson, G.A.2
-
31
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang ZH, Nielsen R, (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Molecular Biology and Evolution 17: 32-43.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 32-43
-
-
Yang, Z.H.1
Nielsen, R.2
-
32
-
-
58549087183
-
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
-
Palenik B, Ren Q, Tai V, Paulsen IT, (2009) Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity. Environmetal Microbiology 11: 349-359.
-
(2009)
Environmetal Microbiology
, vol.11
, pp. 349-359
-
-
Palenik, B.1
Ren, Q.2
Tai, V.3
Paulsen, I.T.4
-
33
-
-
47149092637
-
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
-
Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, et al. (2008) Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology 9: R90.
-
(2008)
Genome Biology
, vol.9
-
-
Dufresne, A.1
Ostrowski, M.2
Scanlan, D.J.3
Garczarek, L.4
Mazard, S.5
-
34
-
-
54949137701
-
MetaSim - a sequencing simulator for genomics and metagenomics
-
Richter DC, Ott F, Auch AF, Schmid R, Huson DH, (2008) MetaSim- a sequencing simulator for genomics and metagenomics. PLoS ONE 3: e3373.
-
(2008)
PLoS ONE
, vol.3
-
-
Richter, D.C.1
Ott, F.2
Auch, A.F.3
Schmid, R.4
Huson, D.H.5
-
35
-
-
33748614882
-
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
-
Palenik B, Ren QH, Dupont CL, Myers GS, Heidelberg JF, et al. (2006) Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proceedings of the National Academy of Sciences of the United States of America 103: 13555-13559.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 13555-13559
-
-
Palenik, B.1
Ren, Q.H.2
Dupont, C.L.3
Myers, G.S.4
Heidelberg, J.F.5
-
36
-
-
67651251795
-
Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains
-
Stuart RK, Dupont CL, Johnson DA, Paulsen IT, Palenik B, (2009) Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains. Applied and Environmental Microbiology 75: 5047-5057.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5047-5057
-
-
Stuart, R.K.1
Dupont, C.L.2
Johnson, D.A.3
Paulsen, I.T.4
Palenik, B.5
-
37
-
-
33644630612
-
Comparisons of dN/dS are time dependent for closely related bacterial genomes
-
Rocha EPC, Smith JM, Hurst LD, Holden MTG, Cooper JE, et al. (2006) Comparisons of dN/dS are time dependent for closely related bacterial genomes. Journal of Theoretical Biology 239: 226-235.
-
(2006)
Journal of Theoretical Biology
, vol.239
, pp. 226-235
-
-
Rocha, E.P.C.1
Smith, J.M.2
Hurst, L.D.3
Holden, M.T.G.4
Cooper, J.E.5
-
38
-
-
33746672041
-
Selection on protein-coding genes of natural cyanobacterial populations
-
Mes THM, Doeleman M, Lodders N, Nubel U, Stal LJ, (2006) Selection on protein-coding genes of natural cyanobacterial populations. Environmental Microbiology 8: 1534-1543.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 1534-1543
-
-
Mes, T.H.M.1
Doeleman, M.2
Lodders, N.3
Nubel, U.4
Stal, L.J.5
-
39
-
-
2942615089
-
The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit
-
Klein DJ, Moore PB, Steintz TA, (2004) The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit. Journal of Molecular Biology 340: 141-177.
-
(2004)
Journal of Molecular Biology
, vol.340
, pp. 141-177
-
-
Klein, D.J.1
Moore, P.B.2
Steintz, T.A.3
-
40
-
-
37349116261
-
A competition mechanism regulates the translation of the Escherichia coli operon encoding ribosomal proteins L35 and L20
-
Haentjens-Sitri J, Allemand F, Springer M, Chiaruttini C, (2008) A competition mechanism regulates the translation of the Escherichia coli operon encoding ribosomal proteins L35 and L20. Journal of Molecular Biology 375: 612-625.
-
(2008)
Journal of Molecular Biology
, vol.375
, pp. 612-625
-
-
Haentjens-Sitri, J.1
Allemand, F.2
Springer, M.3
Chiaruttini, C.4
-
41
-
-
77149147828
-
Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus
-
Zhaxybayeva O, Doolittle WF, Papke RT, Gogarten JP, (2009) Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus. Genome Biology and Evolution 1: 325-339.
-
(2009)
Genome Biology and Evolution
, vol.1
, pp. 325-339
-
-
Zhaxybayeva, O.1
Doolittle, W.F.2
Papke, R.T.3
Gogarten, J.P.4
-
42
-
-
69549122181
-
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
-
Chen K, Roberts E, Luthey-Schulten Z, (2009) Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4. BMC Evolutionary Biology 9.
-
(2009)
BMC Evolutionary Biology
, vol.9
-
-
Chen, K.1
Roberts, E.2
Luthey-Schulten, Z.3
-
43
-
-
67949120452
-
Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp WH8102
-
Tetu SG, Brahamsha B, Johnson DA, Tai V, Phillippy K, et al. (2009) Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp WH8102. ISME Journal 3: 835-849.
-
(2009)
ISME Journal
, vol.3
, pp. 835-849
-
-
Tetu, S.G.1
Brahamsha, B.2
Johnson, D.A.3
Tai, V.4
Phillippy, K.5
-
44
-
-
0031966135
-
Characterization of two pore-forming proteins isolated from the outer membrane of Synechococcus PCC 6301
-
Hansel A, Tadros MH, (1998) Characterization of two pore-forming proteins isolated from the outer membrane of Synechococcus PCC 6301. Current Microbiology 36: 321-326.
-
(1998)
Current Microbiology
, vol.36
, pp. 321-326
-
-
Hansel, A.1
Tadros, M.H.2
-
45
-
-
0032581675
-
Cloning and characterization of the genes coding for two porins in the unicellular cyanobacterium Synechococcus PCC 6301
-
Hansel A, Pattus F, Jurgens UJ, Tadros MH, (1998) Cloning and characterization of the genes coding for two porins in the unicellular cyanobacterium Synechococcus PCC 6301. Biochimica Et Biophysica Acta-Gene Structure and Expression 1399: 31-39.
-
(1998)
Biochimica Et Biophysica Acta-Gene Structure and Expression
, vol.1399
, pp. 31-39
-
-
Hansel, A.1
Pattus, F.2
Jurgens, U.J.3
Tadros, M.H.4
-
46
-
-
11844269958
-
Functional dissection of a conserved motif within the pilus retraction protein PilT
-
Aukema KG, Kron EM, Herdendorf TJ, Forest KT, (2005) Functional dissection of a conserved motif within the pilus retraction protein PilT. Journal of Bacteriology 187: 611-618.
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 611-618
-
-
Aukema, K.G.1
Kron, E.M.2
Herdendorf, T.J.3
Forest, K.T.4
-
47
-
-
0030667721
-
Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains
-
Toledo G, Palenik B, (1997) Synechococcus diversity in the California current as seen by RNA polymerase (rpoC1) gene sequences of isolated strains. Applied and Environmental Microbiology 63: 4298-4303.
-
(1997)
Applied and Environmental Microbiology
, vol.63
, pp. 4298-4303
-
-
Toledo, G.1
Palenik, B.2
-
48
-
-
33748591589
-
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
-
Pinard R, de Winter A, Sarkis GJ, Gerstein MB, Tartaro KR, et al. (2006) Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics 7.
-
(2006)
BMC Genomics
, vol.7
-
-
Pinard, R.1
de Winter, A.2
Sarkis, G.J.3
Gerstein, M.B.4
Tartaro, K.R.5
-
49
-
-
70149108769
-
Whole genome amplification and de novo assembly of single bacterial cells
-
Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, et al. (2009) Whole genome amplification and de novo assembly of single bacterial cells. PLOS One 4.
-
(2009)
PLOS One
, vol.4
-
-
Rodrigue, S.1
Malmstrom, R.R.2
Berlin, A.M.3
Birren, B.W.4
Henn, M.R.5
-
50
-
-
70350294348
-
Systematic artifacts in metagenomes from complex microbial communities
-
Gomez-Alvarez V, Teal TK, Schmidt TM, (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME Journal 3: 1314-1317.
-
(2009)
ISME Journal
, vol.3
, pp. 1314-1317
-
-
Gomez-Alvarez, V.1
Teal, T.K.2
Schmidt, T.M.3
-
51
-
-
79960082882
-
Microarray-based evaluation of whole-community genome DNA amplification methods
-
Wang J, Van Nostrand JD, Wu LY, He ZL, Li GH, et al. (2011) Microarray-based evaluation of whole-community genome DNA amplification methods. Applied and Environmental Microbiology 77: 4241-4245.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, pp. 4241-4245
-
-
Wang, J.1
van Nostrand, J.D.2
Wu, L.Y.3
He, Z.L.4
Li, G.H.5
-
52
-
-
0017220894
-
Role of very slightly deleterious mutations in molecular evolution and polymorphism
-
Ohta T, (1976) Role of very slightly deleterious mutations in molecular evolution and polymorphism. Theoretical Population Biology 10: 254-275.
-
(1976)
Theoretical Population Biology
, vol.10
, pp. 254-275
-
-
Ohta, T.1
-
53
-
-
0028874989
-
Effective population size/adult population size ratios in wildlife: a review
-
Frankham R, (1995) Effective population size/adult population size ratios in wildlife: a review. Genetics Research 66: 95-107.
-
(1995)
Genetics Research
, vol.66
, pp. 95-107
-
-
Frankham, R.1
-
54
-
-
38149124678
-
Microbial diversity - insights from population genetics
-
Mes THM, (2008) Microbial diversity- insights from population genetics. Environmental Microbiology 10: 251-264.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 251-264
-
-
Mes, T.H.M.1
-
55
-
-
0345306751
-
The origins of genome complexity
-
Lynch M, Conery JS, (2003) The origins of genome complexity. Science 302: 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
56
-
-
33750939759
-
Response to Comment on The origins of genome complexity
-
Lynch M, Conery JS, (2004) Response to Comment on "The origins of genome complexity". Science 306: 978b.
-
(2004)
Science
, vol.306
-
-
Lynch, M.1
Conery, J.S.2
-
57
-
-
16544369474
-
Comment on "The origins of genome complexity"
-
Daubin V, Moran NA, (2004) Comment on "The origins of genome complexity". Science 306: 978a.
-
(2004)
Science
, vol.306
-
-
Daubin, V.1
Moran, N.A.2
-
59
-
-
0025183708
-
Basic Local Alignment Search Tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic Local Alignment Search Tool. Journal of Molecular Biology 215: 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
60
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Mark Welch D, (2007) Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biology 8: R143.
-
(2007)
Genome Biology
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Mark Welch, D.5
-
61
-
-
65449144325
-
Evaluation of next generation sequencing platforms for population targeted sequencing studies
-
Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell T, et al. (2009) Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome Biology 10: R32.
-
(2009)
Genome Biology
, vol.10
-
-
Harismendy, O.1
Ng, P.C.2
Strausberg, R.L.3
Wang, X.4
Stockwell, T.5
-
62
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang ZH, (2007) PAML 4: Phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24: 1586-1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.H.1
-
63
-
-
0035798406
-
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
-
Gough J, Karplus K, Hughey R, Chothia C, (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. Journal of Molecular Biology 313: 903-919.
-
(2001)
Journal of Molecular Biology
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
64
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Soding J, Biegert A, Lupas AN, (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Research 33: W244-W248.
-
(2005)
Nucleic Acids Research
, vol.33
, pp. 244-248
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
65
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF, (1982) A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 157: 105-132.
-
(1982)
Journal of Molecular Biology
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
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