An optimized microsatellite genotyping strategy for assessing genetic identity and kinship in Azara's owl monkeys (Aotus azarai)

Folia Primatologica

Volumn 82, Issue 2, 2011, Pages 107-117

  Babb, Paul L ^a   McIntosh, Annick M ^b   Fernandez Duque, Eduardo ^a,d   Di Fiore, Anthony ^c   Schurr, Theodore G ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b HAVERFORD COLLEGE   (United States)

^c UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^d Conicet Argentina ^*  (Argentina)

Author keywords

Autosomal DNA; Monogamy; Platyrrhines; Primates; Short tandem repeats

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL; ANIMAL DISEASE; AOTIDAE; ARGENTINA; ARTICLE; DNA FINGERPRINTING; DNA SEQUENCE; EVALUATION; FEMALE; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; MALE; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATERNITY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

ALLELES; ANIMALS; AOTIDAE; ARGENTINA; DNA FINGERPRINTING; FEMALE; GENOTYPE; MALE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PATERNITY; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

AOTUS (PRIMATE); AOTUS AZARAI; AOTUS TRIVIRGATUS; AZARA; PRIMATES;

EID: 80052569228     PISSN: 00155713     EISSN: None     Source Type: Journal    
DOI: 10.1159/000330564     Document Type: Article

References (51)

1. Amaral JM, Simoes AL, De Jong D (2005). Allele frequencies and genetic diversity in two groups of wild tufted capuchin monkeys (Cebus apella nigritus) living in an urban forest fragment. Genetic Molecular Research 4: 832-838.
2. Böhle UR, Zischler H (2002). Polymorphic microsatellite loci for the mustached tamarin (Saguinus mystax) and their cross-species amplification in other New World monkeys. Molecular Ecology Notes 2: 1-3. (Pubitemid 34287093)
3. Defler TR, Bueno ML (2003). Karyological guidelines for Aotus taxonomy. American Journal of Prima-tology 60: 134-135.
4. Defler TR, Bueno ML (2007). Aotus diversity and the species problem. Primate Conservation 22: 55-70.
5. Di Fiore A (2003). Molecular genetic approaches to the study of primate behavior, social organization and reproduction. Yearbook of Physical Anthropology 46: 62-99.
6. Di Fiore A, Fleischer RC (2004). Microsatellite markers for woolly monkeys ( Lagothrix lagotricha) and their amplification in other New World primates (Primates: Platyrrhini). Molecular Ecology Notes 4: 246-249. (Pubitemid 38688998)
7. Di Fiore A, Fleischer RC (2005). Social behavior, reproductive strategies, and population genetic structure of Lagothrix poeppigii. International Journal of Primatology 26: 1137-1173. (Pubitemid 41436863)
8. Don RH, Cox PT, Wainwright BJ, Baker K, Mattick JS (1991). Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Research 19: 4008.
9. Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A (2010). Geneious v5.0. http://www.geneious.com.
10. Ellsworth JA, Hoelzer GA (1998). Characterization of microsatellite loci in a New World primate, the mantled howler monkey (Alouatta palliata). Molecular Ecology 7: 657-658. (Pubitemid 28235974)
11. Escobar-Paramo P (2000). Microsatellite primers for the wild brown capuchin monkey Cebus apella. Molecular Ecology 9: 107-108. (Pubitemid 30115685)
12. Estoup A, Tailliez C, Cornuet JM, Solignac M (1995). Size homoplasy and mutational processes of interrupted microsatellites in two bee species, Apis mellifera and Bombus terrestris (Apidae). Molecular Biology and Evolution 12: 1074-1084.
13. Excoffier L, Laval G, Schneider S (2005). Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics 1: e47-e50.
14. Fernandez-Duque E (2009). Natal dispersal in monogamous owl monkeys (Aotus azarai) of the Argentinean Chaco. Behaviour 146: 583-606.
15. Fernandez-Duque E (2011). The Aotinae: social monogamy in the only nocturnal haplorhines. In Primates in Perspective (Campbell CJ, Fuentes A, Mackinnon KC, Panger M, Bearder SK, eds.), pp 139-154. New York, Oxford University Press.
16. Fernandez-Duque E, Rotundo M (2003). Field methods for capturing and marking Azara's night monkeys. International Journal of Primatology 24: 1113-1120. (Pubitemid 37488730)
17. Fernandez-Duque E, Juárez C, Di Fiore A (2008). Adult male replacement and subsequent infant care by male and siblings. Primates 41: 81-84.
18. Fernandez-Duque E, Valeggia C, Mendoza SP (2009). The biology of paternal care. Annual Review of Anthropology 38: 83-97.
19. Grativol AD, Ballou JD, Fleischer RC (2001). Microsatellite variation within and among recently fragmented populations of the golden lion tamarin (Leontopithecus rosalia). Conservation Genetics 2: 1-9. (Pubitemid 33638235)
20. Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999). Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques 27: 500-507. (Pubitemid 29431980)
21. Hamilton WD (1964a). The genetical evolution of social behaviour. Part I. Journal of Theoretical Biology 7: 1-16.
22. Hamilton WD (1964b). The genetical evolution of social behaviour. Part II. Journal of Theoretical Biology 7: 17-52.
23. Huck M, Lottker P, Böhle UR, Heymann EW (2005). Paternity and kinship patterns in polyandrous moustached tamarins (Saguinus mystax). American Journal of Physical Anthropology 127: 449-464. (Pubitemid 41022737)
24. Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hin-richs AS, Hsu F, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ (2008). The UCSC Genome Browser Database: 2008 update. Nucleic Acids Research 36: 773-779.
25. Katoh H, Takabayashi S, Itoh T (2009). Development of microsatellite DNA markers and their chromosome assignment in the common marmoset. American Journal of Primatology 71: 912-918.
26. Kayser M, Kittler R, Erler A, Hedman M, Lee AC, Mohyuddin A, Mehdi SQ, Rosser Z, Stoneking M, Jobling MA, Sajantila A, Tyler-Smith C (2004). A comprehensive survey of human Y-chromosom-al microsatellites. American Journal of Human Genetics 74: 1183-1197. (Pubitemid 38669317)
27. Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D (2002). The human genome browser at UCSC. Genome Research 12: 996-1006. (Pubitemid 34662293)
28. Korbie DJ, Mattick JS (2008). Touchdown PCR for increased specificity and sensitivity in PCR amplification. Nature Protocols 3: 1452-1456.
29. Lau J, Fernandez-Duque E, Evans S, Dixson AF, Ryder O (2004). Heterologous amplification and diversity of microsatellite loci in three owl monkey species (Aotus azarai, A. lemurinus, A. nancymaae). Conservation Genetics 5: 727-731. (Pubitemid 40099338)
30. Ma NSF (1981). Chromosome evolution in the owl monkey, Aotus. American Journal of Physical Anthropology 54: 293-303.
31. Ma NSF, Aquino R, Collins WE (1985). Two new karyotypes in the Peruvian owl monkey (Aotus trivir-gatus). American Journal of Primatology 9: 333-341.
32. Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998). Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7: 639-655. (Pubitemid 28235973)
33. Morin PA, Kanthaswamy S, Smith DG (1997). Simple sequence repeat (SSR) polymorphisms for colony ma nagement and population genetics in rhesus macaques (Macaca mulatta). American Journal of Primatology 42: 199-213. (Pubitemid 27288685)
34. Morin PA, Mahboubi P, Wedel S, Rogers J (1998). Rapid screening and comparison of human microsat-ellite markers in baboons: allele size is conserved, but allele number is not. Genomics 53: 12-20. (Pubitemid 28489642)
35. Morin PA, Chambers KE, Boesch C, Vigilant L (2001). Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus). Molecular Ecology 10: 1835-p1844. (Pubitemid 32667738)
36. Muniz L, Vigilant L (2008). Isolation and characterization of microsatellite markers in the white-faced capuchin monkey (Cebus capucinus) and cross-species amplification in other New World monkeys. Molecular Ecology Resources 8: 402-405. (Pubitemid 351224866)
37. Nievergelt CM, Mundy NI, Woodruff DS (1998). Microsatellite primers for genotyping common marmosets (Callithrix jacchu s) and other callitrichids. Molecular Ecology 7: 1432-1434. (Pubitemid 28472053)
38. Oklander LI, Zunino GE, Di Fiore A, Corach D (2007). Isolation, characterization and evaluation of 11 autosomal STRs suitable for population studies in black and gold howler monkeys Alouatta ca-raya. Molecular Ecology Notes 7: 117-120. (Pubitemid 46046602)
39. Pena SD, Chakraborty R (1994). Paternity testing in the DNA era. Trendsin Genetics 10: 204-209. (Pubitemid 24162755)
40. Perez-Sweeney BM, Valladares-Padua C, Burrell AS, Di Fiore A, Satkoski J, Van Coeverden de Groot PJ, Boag PT, Melnick DJ (2005). Dinucleotide microsatellite primers designed for a critically endangered primate, the black lion tamarin (Leontopithecus chrysopygus). Molecular Ecology Notes 5: 198-201. (Pubitemid 40772326)
41. Raveendran M, Tardif S, Ross CN, Austad SN, Harris RA, Milosavljevic A, Rogers J (2008). Polymorphic microsatellite loci for the common marmoset (Callithr ix jacchu s) designed using a cost-and time-efficient method. American Journal of Primatology 70: 906-910.
42. Roeder AD, Bonhomme M, Heijmans C, Bruford MC, Crouau-Roy B, Doxiadis G, Otting N, INPRI-MAT consortium (2009). A large panel of microsatellite markers for genetic studies in the infra-order Catarrhini. Folia Primatologica 80: 63-69.
43. Rotundo M, Fernandez-Duque E, Dixson A (2005). Infant development and parental care in free-ranging Aotus azarai azarai in Argentina. International Journal of Primatology 26: 1459-1473. (Pubitemid 43036844)
44. Slate J, Marshall TC, Pemberton JM (2000). A retrospective assessment of the accuracy of the paternity inference program Cervus. Molecular Ecology 9: 801-808. (Pubitemid 30354655)
45. Soulsbury CD, Iossa G, Edwards KJ (2009). The influence of evolutionary distance between cross-species microsatellites and primer base-pair composition on allelic dropout rates. Conservation Genetics 10: 797-802.
46. Stanyon R, Bonvicino CR, Svartman M, Seuanez HN (2003). Chromosome painting in Callicebus lu-gens , the species with the lowest diploid number (2n = 16) known in primates. Chromosoma 112: 201-206. (Pubitemid 38063154)
47. Trivers RL (1972). Parental investment and sexual selection. In Sexual Selection and the Descent of Man (Campbell B, ed.), pp 136-179. Chicago, Aldine Publishing Company.
48. Viard F, Franck P, Dubois MP, Estoup A, Jarne P (1998). Variation of microsatellite size homoplasy across electromorphs, loci, and populations in three invertebrate species. Journal of Molecular Evolution 47: 42-51. (Pubitemid 28307572)
49. Witte SM, Rogers J (1999). Microsatellite polymorphisms in Bolivian squirrel monkeys (Saimiri bolivi-ensis). American Journal of Primatology 47: 75-84. (Pubitemid 29032002)
50. Wolovich CK, Feged A, Evans S, Green SM (2006). Social patterns of food sharing in monogamous owl monkeys. American Journal of Primatology 68: 663-674. (Pubitemid 44077304)
51. Wolovich CK, Perea-Rodriguez JP, Fernandez-Duque E (2008). Food transfers to young and mates in wild owl monkeys (Aotus azarai). American Journal of Primatology 70: 211-221.