Heuristically optimal path scanning for high-speed multiphoton circuit imaging

Journal of Neurophysiology

Volumn 106, Issue 3, 2011, Pages 1591-1598

  Sadovsky, Alexander J ^a   Kruskal, Peter B ^a   Kimmel, Joseph M ^a   Ostmeyer, Jared ^a   Neubauer, Florian B ^a   MacLean, Jason N ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

Calcium imaging; Multiphoton microscopy; Neuronal dynamics; Software

Indexed keywords

CALCIUM;

ACTION POTENTIAL; ANIMAL EXPERIMENT; ARTICLE; CELL POPULATION; FLUORESCENCE ANALYSIS; MOUSE; MULTIPHOTON MICROSCOPY; NERVE CELL; NONHUMAN; PRIORITY JOURNAL;

ACTION POTENTIALS; ANIMALS; MICE; MICE, INBRED C57BL; MICROSCOPY, FLUORESCENCE, MULTIPHOTON; NEURONS; SOFTWARE;

EID: 80052559625     PISSN: 00223077     EISSN: 15221598     Source Type: Journal    
DOI: 10.1152/jn.00334.2011     Document Type: Article

References (20)

1. Amaral ME, Grant JR, Riggs PK, Stafuzza NB, Filho EA, Goldammer T, Weikard R, Brunner RM, Kochan KJ, Greco AJ, Jeong J, Cai Z, Lin G, Prasad A, Kumar S, Saradhi GP, Mathew B, Kumar MA, Miziara MN, Mariani P, Caetano AR, Galvão SR, Tantia MS, Vijh RK, Mishra B, Kumar ST, Pelai VA, Santana AM, Fornitano LC, Jones BC, Tonhati H, Moore S, Stothard P, Womack JE. A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. BMC Genomics 9: 631, 2008.
2. Apiletti D, Baralis E, Cerquitelli T. Energy-saving models for wireless sensor networks. Knowl Inf Syst: 1-30, 2010.
3. Cheng A, Gonçalves JT, Golshani P, Arisaka K, Portera-Cailliau C. Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing. Nat Methods 8: 139-144, 2011.
4. Duemani Reddy G, Kelleher K, Fink R, Saggau P. Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity. Nat Neurosci 11: 713-720, 2008.
5. Fan GY, Fujisaki H, Miyawaki a Tsay RK, Tsien RY, Ellisman MH. Video-rate scanning two-photon excitation fluorescence microscopy and ratio imaging with cameleons. Biophys J 76: 2412-2420, 1999.
6. Göbel W, Kampa BM, Helmchen F. Imaging cellular network dynamics in three dimensions using fast 3D laser scanning. Nat Methods 4: 73-79, 2007.
7. Harris KD. Neural signatures of cell assembly organization. Nat Rev Neurosci 6: 399-407, 2005.
8. Hebb DO. The Organization of Behavior. New York: Wiley, 1949.
9. Helsgaun K. An effective implementation of the Lin-Kernighan traveling salesman heuristic. Eur J Oper Res 126: 106-130, 2000.
10. Kudrimoti HS, Barnes C, McNaughton BL. Reactivation of hippocampal cell assemblies: effects of behavioral state, experience, and EEG dynamics. J Neurosci 19: 4090-4101, 1999.
11. Lillis KP, Eng A, White JA, Mertz J. Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution. J Neurosci Methods 172: 178-184, 2008.
12. MacLean JN, Watson BO, Aaron GB, Yuste R. Internal dynamics determine the cortical response to thalamic stimulation. Neuron 48: 811-823, 2005.
13. Nikolenko V, Poskanzer KE, Yuste R. Two-photon photostimulation and imaging of neural circuits. Nat Methods 4: 943-950, 2007.
14. Nikolenko V, Watson BO, Araya R, Woodruff A, Peterka DS, Yuste R. SLM microscopy: scanless two-photon imaging and photostimulation with spatial light modulators. Front Neural Circuits 2: 1-14, 2008.
15. Ohki K, Chung S, Kara P, Hübener M, Bonhoeffer T, Reid RC. Highly ordered arrangement of single neurons in orientation pinwheels. Nature 442: 925-928, 2006.
16. Otsu Y, Bormuth V, Wong J, Mathieu B, Dugué GP, Feltz A, Dieudonné S. Optical monitoring of neuronal activity at high frame rate with a digital randomaccess multiphoton (RAMP) microscope. J Neurosci Methods 173: 259-270, 2008.
17. Valmianski I, Shih AY, Driscoll JD, Matthews DW, Freund Y, Kleinfeld D. Automatic identification of fluorescently labeled brain cells for rapid functional imaging. J Neurophysiol 104: 1803-1811, 2010.
18. Vogelstein JT, Packer AM, Machado TA, Sippy T, Babadi B, Yuste R, Paninski L. Fast non-negative deconvolution for spike train inference from population calcium imaging. J Neurophysiol 104: 3691-3704, 2010.
19. Watson BO, MacLean JN, Yuste R. UP states protect ongoing cortical activity from thalamic inputs. PLoS One 3: e3971, 2008.
20. Watson BO, Nikolenko V, Yuste R. Two-photon imaging with diffractive optical elements. Front Neural Circuits 3: 1-11, 2009.