Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842 T), a plant growth-promoting bacterium

Journal of Bacteriology

Volumn 193, Issue 18, 2011, Pages 5026-5027

  Jeong, Haeyoung ^a   Park, Soo Young ^a   Chung, Won Hyong ^a   Kim, Sun Hong ^a   Kim, Namshin ^a   Park, Seung Hwan ^a,b   Kim, Jihyun F ^a,b  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b University of Science and Technology (UST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; FUSARICIDIN; HYDROLASE; POLYKETIDE; POLYMYXIN; TRIDECAPTIN; UNCLASSIFIED DRUG;

BACTERIAL GENOME; BACTERIAL STRAIN; COMPARATIVE STUDY; ENZYME SYNTHESIS; GENE CLUSTER; GENOME ANALYSIS; HOST PATHOGEN INTERACTION; NONHUMAN; NOTE; PAENIBACILLUS POLYMYXA; PRIORITY JOURNAL; RHIZOSPHERE;

ANTI-BACTERIAL AGENTS; BIOSYNTHETIC PATHWAYS; DNA, BACTERIAL; ENZYMES; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PAENIBACILLUS; PLANTS; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPORES, BACTERIAL;

BACTERIA (MICROORGANISMS); PAENIBACILLACEAE; PAENIBACILLUS POLYMYXA; POSIBACTERIA;

EID: 80052526680     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05447-11     Document Type: Note

References (20)

1. Ash, C., F. G. Priest, and M. D. Collins. 1993. Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCRprobe test. Proposal for the creation of a new genus Paenibacillus. Antonie Van Leeuwenhoek 64:253-260.
2. Aziz, R. K., et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
3. Choi, S. K., et al. 2009. Identification of a polymyxin synthetase gene cluster of Paenibacillus polymyxa and heterologous expression of the gene in Bacillus subtilis. J. Bacteriol. 191:3350-3358.
4. Choi, S. K., et al. 2008. Identification and functional analysis of the fusaricidin biosynthetic gene of Paenibacillus polymyxa E681. Biochem. Biophys. Res. Commun. 365:89-95.
5. Coelho, M. R., I. von der Weid, V. Zahner, and L. Seldin. 2003. Characterization of nitrogen-fixing Paenibacillus species by PCR-restriction fragment length polymorphism analysis of part of genes encoding 16S rRNA and 23S rRNA and by multilocus enzyme electrophoresis. FEMS Microbiol. Lett. 222:243-250.
6. Holl, F. B., C. P. Chanway, R. Turkington, and R. A. Radley. 1988. Response of crested wheatgrass (Agropyron cristatum L.), perennial ryegrass (Lolium perenne) and white clover (Trifolium repens L.) to inoculation with Bacillus polymyxa. Soil Biol. Biochem. 20:19-24.
7. T. J. Microbiol. Biotechnol. 16:1650-1655.
8. Kim, J. F., et al. 2010. Genome sequence of the polymyxin-producing plantprobiotic rhizobacterium Paenibacillus polymyxa E681. J. Bacteriol. 192: 6103-6104.
9. Koski, L. B., M. W. Gray, B. F. Lang, and G. Burger. 2005. AutoFACT: an automatic functional annotation and classification tool. BMC Bioinformatics 6:151.
10. Lal, S., and S. Tabacchioni. 2009. Ecology and biotechnological potential of Paenibacillus polymyxa: a minireview. Indian J. Microbiol. 49:2-10.
11. Lebuhn, M., T. Heulin, and A. Hartmann. 1997. Production of auxin and other indolic and phenolic compounds by Paenibacillus polymyxa strains isolated from different proximity to plant roots. FEMS Microbiol. Ecol. 22:325-334.
12. Li, J., and S. E. Jensen. 2008. Nonribosomal biosynthesis of fusaricidins by Paenibacillus polymyxa PKB1 involves direct activation of a D-amino acid. Chem. Biol. 15:118-127.
13. Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of tRNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
14. Ma, M., et al. 2011. Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting rhizobacterium with broad-spectrum antimicrobial activity. J. Bacteriol. 193:311-312.
15. McSpadden Gardener, B. B. 2004. Ecology of Bacillus and Paenibacillus spp. in agricultural systems. Phytopathology 94:1252-1258.
16. Phi, Q. T., et al. 2008. Isolation and characterization of transposon-insertional mutants from Paenibacillus polymyxa E681 altering the biosynthesis of indole-3-acetic acid. Curr. Microbiol. 56:524-530.
17. Raza, W., W. Yang, and Q.-R. Shen. 2008. Paenibacillus polymyxa: antibiotics, hydrolytic enzymes and hazard assessment. J. Plant Pathol. 90:419-430.
18. Simpson, J. T., et al. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res. 19:1117-1123.
19. Smith, N. R., T. Gibson, R. E. Gordon, and P. H. Sneath. 1964. Type cultures and proposed neotype cultures of some species in the genus Bacillus. J. Gen. Microbiol. 34:269-272.
20. Timmusk, S., B. Nicander, U. Granhall, and E. Tillberg. 1999. Cytokinin production by Paenibacillus polymyxa. Soil Biol. Biochem. 31:1847-1852