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Volumn 39, Issue 16, 2011, Pages 7329-7335

Base pair opening kinetics study of the aegPNA:DNA hydrid duplex containing a site-specific GNA-like chiral PNA monomer

Author keywords

[No Author keywords available]

Indexed keywords

DNA HYBRID; DOUBLE STRANDED DNA; GLYCINE DERIVATIVE; MONOMER; N (2 AMINOETHYL)GLYCINE; N (2 AMINOETHYL)GLYCINE PEPTIDE NUCLEIC ACID DOUBLE STRANDED DNA HYBRID; PEPTIDE NUCLEIC ACID; UNCLASSIFIED DRUG;

EID: 80052514463     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr360     Document Type: Article
Times cited : (5)

References (23)
  • 1
    • 0026341239 scopus 로고
    • Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide
    • Nielsen, P.E., Egholm, M., Berg, R.H. and Buchardt, O. (1991) Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science, 254, 1497-1500. (Pubitemid 21917487)
    • (1991) Science , vol.254 , Issue.5037 , pp. 1497-1500
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 2
    • 84990238662 scopus 로고
    • Peptide nucleic acids (PNA). Oligonucleotide analogs with an achiral peptide backbone
    • Egholm, M., Buchardt, O. and Nielsen, P.E. (1992) Peptide nucleic acids (PNA). Oligonucleotide analogs with an achiral peptide backbone. J. Am. Chem. Soc., 114, 1895-1897.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 1895-1897
    • Egholm, M.1    Buchardt, O.2    Nielsen, P.E.3
  • 3
    • 0034078048 scopus 로고    scopus 로고
    • Peptide nucleic acid (PNA): Its medical and biotechnical applications and promise for the future
    • Ray, A. and Nordé n, B. (2000) Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future. FASEB J., 14, 1041-1060. (Pubitemid 30350386)
    • (2000) FASEB Journal , vol.14 , Issue.9 , pp. 1041-1060
    • Ray, A.1    Norden, B.2
  • 4
    • 0031012681 scopus 로고    scopus 로고
    • Crystal structure of a peptide nucleic acid (PNA) duplex at 1.7 a resolution
    • DOI 10.1038/nsb0297-98
    • Rasmussen, H., Kastrup, J.S., Nielsen, J.N., Nielsen, J.M. and Nielsen, P.E. (1997) Crystal structure of a peptide nucleic acid (PNA) duplex at 1.7 A resolution. Nat. Struct. Biol., 4, 98-101. (Pubitemid 27066381)
    • (1997) Nature Structural Biology , vol.4 , Issue.2 , pp. 98-101
    • Rasmussen, H.1    Kastrup, S.J.2    Nielsen, J.N.3    Nielsen, J.M.4    Nielsen, P.E.5
  • 5
    • 0028066788 scopus 로고
    • NMR solution structure of a peptide nucleic acid complexed with RNA
    • Brown, S.C., Thomson, S.A., Veal, J.M. and Davis, D.G. (1994) NMR solution structure of a peptide nucleic acid complexed with RNA. Science, 265, 777-780. (Pubitemid 24266136)
    • (1994) Science , vol.265 , Issue.5173 , pp. 777-780
    • Brown, S.C.1    Thomson, S.A.2    Veal, J.M.3    Davis, D.G.4
  • 6
    • 0029996180 scopus 로고    scopus 로고
    • Solution structure of a peptide nucleic acid-DNA duplex
    • DOI 10.1038/nsb0596-410
    • Eriksson, M. and Nielsen, P.E. (1996) Solution structure of a peptide nucleic acid-DNA duplex. Nat. Struct. Biol., 3, 410-413. (Pubitemid 26139438)
    • (1996) Nature Structural Biology , vol.3 , Issue.5 , pp. 410-413
    • Eriksson, M.1    Nielsen, P.E.2
  • 8
    • 0029610659 scopus 로고
    • A nucleic acid triple helix formed by a peptide nucleic acid-DNA complex
    • Betts, L., Josey, J.A., Veal, J.M. and Jordan, S.R. (1995) A nucleic acid triple helix formed by a peptide nucleic acid-DNA complex. Science, 270, 1838-1841. (Pubitemid 26007234)
    • (1995) Science , vol.270 , Issue.5243 , pp. 1838-1841
    • Betts, L.1    Josey, J.A.2    Veal, J.M.3    Jordan, S.R.4
  • 10
    • 0028260073 scopus 로고
    • DNA-like double helix formed by peptide nucleic acid
    • DOI 10.1038/368561a0
    • Wittung, P., Nielsen, P.E., Buchardt, O., Egholm, M. and Nordé n, B. (1994) DNA-like double helix formed by peptide nucleic acid. Nature, 368, 561-563. (Pubitemid 24118775)
    • (1994) Nature , vol.368 , Issue.6471 , pp. 561-563
    • Wittung, P.1    Nielsen, P.E.2    Buchardt, O.3    Egholm, M.4    Norden, B.5
  • 12
    • 0033572925 scopus 로고    scopus 로고
    • Thermodynamic comparison of PNA/DNA and DNA/DNA hybrizitation reactions at ambient temperature
    • Schwarz, F.P., Robinson, S. and Butler, J.M. (1999) Thermodynamic comparison of PNA/DNA and DNA/DNA hybridization reactions at ambient temperature. Nucleic Acids Res., 27, 4792-4800. (Pubitemid 30006670)
    • (1999) Nucleic Acids Research , vol.27 , Issue.24 , pp. 4792-4800
    • Schwarz, F.P.1    Robinson, S.2    Butler, J.M.3
  • 13
    • 0033572750 scopus 로고    scopus 로고
    • Thermal stability of PNA/DNA and DNA/DNA duplexes by differential scanning calorimetry
    • Chakrabarti, M.C. and Schwarz, F.P. (1999) Thermal stability of PNA/DNA and DNA/DNA duplexes by differential scanning calorimetry. Nucleic Acids Res., 27, 4801-4806. (Pubitemid 30006671)
    • (1999) Nucleic Acids Research , vol.27 , Issue.24 , pp. 4801-4806
    • Chakrabarti, M.C.1    Schwarz, F.P.2
  • 14
    • 0034604217 scopus 로고    scopus 로고
    • Thermodynamics of sequence-specifc binding of PNA to DNA
    • DOI 10.1021/bi000039g
    • Ratilainen, T., Holmen, A., Tuite, E., Nielsen, P.E. and Norden, B. (2000) Thermodynamics of sequence-specific binding of PNA to DNA. Biochemistry, 39, 7781-7791. (Pubitemid 30439606)
    • (2000) Biochemistry , vol.39 , Issue.26 , pp. 7781-7791
    • Ratilainen, T.1    Holmen, A.2    Tuite, E.3    Nielsen, P.E.4    Norden, B.5
  • 16
    • 0031583481 scopus 로고    scopus 로고
    • Unique base-pair breathing dynamics in PNA-DNA hybrids
    • DOI 10.1006/jmbi.1997.1153
    • Leijon, M., Sehlstedt, U., Nielsen, P.E. and Grä slund, A. (1997) Unique base-pair breathing dynamics in PNA-DNA hybrids. J. Mol. Biol., 271, 438-455. (Pubitemid 27348509)
    • (1997) Journal of Molecular Biology , vol.271 , Issue.3 , pp. 438-455
    • Leijon, M.1    Sehlstedt, U.2    Nielsen, P.E.3    Graslund, A.4
  • 17
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR, 6, 277-293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 18
    • 0004040543 scopus 로고    scopus 로고
    • University of California, San Francisco, CA
    • Goddard, T.D. and Kneller, D.G. (2003) SPARKY 3. University of California, San Francisco, CA.
    • (2003) SPARKY 3
    • Goddard, T.D.1    Kneller, D.G.2
  • 19
    • 34250688767 scopus 로고    scopus 로고
    • Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme
    • DOI 10.1093/nar/gkm184
    • Lee, J.-H. and Pardi, A. (2007) Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme. Nucleic Acids Res., 35, 2965-2974. (Pubitemid 47073635)
    • (2007) Nucleic Acids Research , vol.35 , Issue.9 , pp. 2965-2974
    • Lee, J.-H.1    Pardi, A.2
  • 20
    • 44449142399 scopus 로고    scopus 로고
    • Imino proton exchange rates imply an induced-fit binding mechanism for the VEGF165-targeting aptamer, Macugen
    • Lee, J.-H., Jucker, F. and Pardi, A. (2008) Imino proton exchange rates imply an induced-fit binding mechanism for the VEGF165-targeting aptamer, Macugen. FEBS Lett., 582, 1835-1839.
    • (2008) FEBS Lett. , vol.582 , pp. 1835-1839
    • Lee, J.H.1    Jucker, F.2    Pardi, A.3
  • 21
    • 58849155112 scopus 로고    scopus 로고
    • Structural and dynamics study of DNA dodecamer duplexes that contain un-, hemi-, or fully methylated GATC sites
    • Bang, J., Bae, S.-H., Park, C.-J., Lee, J.-H. and Choi, B.-S. (2008) Structural and dynamics study of DNA dodecamer duplexes that contain un-, hemi-, or fully methylated GATC sites. J. Am. Chem. Soc., 130, 17688-17696.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 17688-17696
    • Bang, J.1    Bae, S.H.2    Park, C.-J.3    Lee, J.-H.4    Choi, B.-S.5
  • 22
    • 67349271044 scopus 로고    scopus 로고
    • Thermodynamics and kinetics for base pair opening in the DNA decamer duplexes containing cyclobutane pyrimidine dimer
    • Bang, J., Kang, Y.-M., Park, C.-J., Lee, J.-H. and Choi, B.-S. (2009) Thermodynamics and kinetics for base pair opening in the DNA decamer duplexes containing cyclobutane pyrimidine dimer. FEBS Lett., 583, 2037-2041.
    • (2009) FEBS Lett. , vol.583 , pp. 2037-2041
    • Bang, J.1    Kang, Y.-M.2    Park, C.-J.3    Lee, J.-H.4    Choi, B.-S.5
  • 23
    • 0028864424 scopus 로고
    • Studies of base pair kinetics by NMR measurement of proton exchange
    • Gué ron, M. and Leroy, J.L. (1995) Studies of base pair kinetics by NMR measurement of proton exchange. Methods Enzymol., 261, 383-413.
    • (1995) Methods Enzymol , vol.261 , pp. 383-413
    • Guéron, M.1    Leroy, J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.