Advances in diagnosis of respiratory virus infections

International Journal of Microbiology

Volumn , Issue , 2010, Pages

  Loeffelholz, Michael ^a   Chonmaitree, Tasnee ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 80052500442     PISSN: 1687918X     EISSN: 16879198     Source Type: Journal    
DOI: 10.1155/2010/126049     Document Type: Review

References (49)

1. T. Chonmaitree, K. Revai, J. J. Grady et al., "Viral upper respiratory tract infection and otitis media complication in young children, " Clinical Infectious Diseases, vol. 46, no. 6, pp. 815-823, 2008. (Pubitemid 351417180)
2. J. P. Fox, C. E. Hall, M. K. Cooney, R. E. Luce, and R. A. Kronmal, "The Seattle virus watch. II. Objectives, study population and its observation, data processing and summary of illnesses, " American Journal of Epidemiology, vol. 96, no. 4, pp. 270-285, 1972.
3. A. S.Monto and B.M. Ullman, "Acute respiratory illness in an American community. The Tecumseh study, " JAMA, vol. 227, no. 2, pp. 164-169, 1974.
4. M. R. Stahlberg, "The influence of form of day care on occurrence of acute respiratory tract infections among young children, " Acta Paediatrica Scandinavica, vol. 282, supplement 1, pp. 1-87, 1980.
5. K. J. Henrickson, "Viral pneumonia in children, " Seminars in Pediatric Infectious Diseases, vol. 9, no. 3, pp. 217-233, 1998. (Pubitemid 28364299)
6. A. L. Wright, L. M. Taussig, C. G. Ray, H. R. Harrison, and C. J. Holberg, "The Tucson children's respiratory study. II. Lower respiratory tract illness in the first year of life, " American Journal of Epidemiology, vol. 129, no. 6, pp. 1232-1246, 1989. (Pubitemid 19148464)
7. D. Kesebir, M. Vazquez, C. Weibel et al., "Human bocavirus infection in young children in the United States: molecular epidemiological profile and clinical characteristics of a newly emerging respiratory virus, " Journal of Infectious Diseases, vol. 194, no. 9, pp. 1276-1282, 2006. (Pubitemid 44630973)
8. L. van der Hoek, "Human coronaviruses: what do they cause?" Antiviral Therapy, vol. 12, no. 4 B, pp. 651-658, 2007.
9. J. Barenfanger, C. Drake, N. Leon, T. Mueller, and T. Troutt, "Clinical and financial benefits of rapid detection of respiratory viruses: an outcomes study, " Journal of Clinical Microbiology, vol. 38, no. 8, pp. 2824-2828, 2000. (Pubitemid 30640557)
10. A. R. Falsey, Y. Murata, and E. E. Walsh, "Impact of rapid diagnosis on management of adults hospitalized with influenza, " Archives of Internal Medicine, vol. 167, no. 4, pp. 354-360, 2007. (Pubitemid 46333935)
11. D. E. Noyola and G. J. Demmler, "Effect of rapid diagnosis on management of influenza A infections, " Pediatric Infectious Disease Journal, vol. 19, no. 4, pp. 303-307, 2000. (Pubitemid 30213068)
12. P. Daley, S. Castriciano, M. Chernesky, and M. Smieja, "Comparison of flocked and rayon swabs for collection of respiratory epithelial cells from uninfected volunteers and symptomatic patients, " Journal of Clinical Microbiology, vol. 44, no. 6, pp. 2265-2267, 2006. (Pubitemid 43902191)
13. A. Abu-Diab, M. Azzeh, R. Ghneim et al., "Comparison between pernasal flocked swabs and nasopharyngeal aspirates for detection of common respiratory viruses in samples from children, " Journal of Clinical Microbiology, vol. 46, no. 7, pp. 2414-2417, 2008.
14. P. Walsh, C. L. Overmyer, K. Pham et al., "Comparison of respiratory virus detection rates for infants and toddlers by use of flocked swabs, saline aspirates, and saline aspirates mixed in universal transport medium for room temperature storage and shipping, " Journal of Clinical Microbiology, vol. 46, no. 7, pp. 2374-2376, 2008.
15. K. A. Scansen, B. K. Bonsu, E. Stoner et al., "Comparison of polyurethane foam to nylon flocked swabs for collection of secretions from the anterior nares in performance of a rapid influenza virus antigen test in a pediatric emergency department, " Journal of Clinical Microbiology, vol. 48, no. 3, pp. 852-856, 2010.
16. G. Ahluwalia, J. Embree, and P. McNicol, "Comparison of nasopharyngeal aspirate and nasopharyngeal swab specimens for respiratory syncytial virus diagnosis by cell culture, indirect immunofluorescence assay, and enzyme-linked immunosorbent assay, " Journal of Clinical Microbiology, vol. 25, no. 5, pp. 763-767, 1987. (Pubitemid 17053209)
17. D. A. Lennette, "Collection and preparation of specimens for virological examination, " in Manual of Clinical Microbiology, P.R.Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, andR.H. Yolken, Eds., p. 870, American Society forMicrobiology Press, Washington, DC, USA, 6th edition, 1995.
18. K. McIntosh, R. M. Hendry, M. L. Fahnestock, and L. T. Pierik, "Enzyme-linked immunosorbent assay for detection of respiratory syncytial virus infection: application to clinical samples, " Journal of Clinical Microbiology, vol. 16, no. 2, pp. 329-333, 1982. (Pubitemid 12049095)
19. K. H. Chan, J. S. M. Peiris, W. Lim, J. M. Nicholls, and S. S. Chiu, "Comparison of nasopharyngeal flocked swabs and aspirates for rapid diagnosis of respiratory viruses in children, " Journal of Clinical Virology, vol. 42, no. 1, pp. 65-69, 2008.
20. K. Agoritsas, K.Mack, B. K. Bonsu, D. Goodman, D. Salamon, and M. J. Marcon, "Evaluation of the Quidel QuickVue test for detection of influenza A and B viruses in the pediatric emergencymedicine setting by use of three specimen collection methods, " Journal of Clinical Microbiology, vol. 44, no. 7, pp. 2638-2641, 2006. (Pubitemid 44092449)
21. S. Lambert, D. M. Whiley, N. T. O'Neill et al., "Comparing nose-throat swabs and nasopharyngeal aspirates collected from children with symptoms for respiratory virus identification using real-time polymerase chain reaction, " Pediatrics, vol. 122, no. 3, pp. e615-e620, 2008.
22. S. B. Lambert, K. M. Allen, and T.M. Nolan, "Parent-collected respiratory specimens-A novel method for respiratory virus and vaccine efficacy research, " Vaccine, vol. 26, no. 15, pp. 1826-1831, 2008.
23. C. Moore, S. Corden, J. Sinha, and R. Jones, "Dry cotton or flocked respiratory swabs as a simple collection technique for the molecular detection of respiratory viruses using real-time NASBA, " Journal of Virological Methods, vol. 153, no. 2, pp. 84-89, 2008.
24. C. C. Ginocchio, "Detection of respiratory viruses using nonmolecular based methods, " Journal of Clinical Virology, vol. 40, no. 1, pp. S11-S14, 2007. (Pubitemid 350298968)
25. J. A. Englund, P. A. Piedra, A. Jewell, K. Patel, B. B. Baxter, and E. Whimbey, "Rapid diagnosis of respiratory syncytial virus infections in immunocompromised adults, " Journal of Clinical Microbiology, vol. 34, no. 7, pp. 1649-1653, 1996. (Pubitemid 26190391)
26. N. Kawai, H. Ikematsu, N. Iwaki et al., "Longer virus shedding in influenza B than in influenza A among outpatients treated with oseltamivir, " Journal of Infection, vol. 55, no. 3, pp. 267- 272, 2007. (Pubitemid 47248483)
27. J. C. Abanses, M. D. Dowd, S. D. Simon, and V. Sharma, "Impact of rapid influenza testing at triage on management of febrile infants and young children, " Pediatric Emergency Care, vol. 22, no. 3, pp. 145-149, 2006.
28. A. R. Falsey, Y. Murata, and E. E. Walsh, "Impact of rapid diagnosis on management of adults hospitalized with influenza, " Archives of Internal Medicine, vol. 167, no. 4, pp. 354-360, 2007. (Pubitemid 46333935)
29. C. C. Blyth, J. R. Iredell, and D. E. Dwyer, "Rapid-test sensitivity for novel swine-origin influenza A (H1N1) virus in humans, " The New England Journal of Medicine, vol. 361, no. 25, p. 2493, 2009.
30. Centers for Disease Control and Prevention, "Evaluation of rapid influenza diagnostic tests for detection of novel influenza A (H1N1) virus-United States, 2009, " Morbidity and Mortality Weekly Report, vol. 58, no. 30, pp. 826-829, 2009.
31. C. C. Ginocchio, F. Zhang, R. Manji et al., "Evaluation of multiple test methods for the detection of the novel 2009 influenza A (H1N1) during the New York City outbreak, " Journal of Clinical Virology, vol. 45, no. 3, pp. 191-195, 2009.
32. J. Aslanzadeh, X. Zheng, H. Li et al., "Prospective evaluation of rapid antigen tests for diagnosis of respiratory syncytial virus and human metapneumovirus infections, " Journal of Clinical Microbiology, vol. 46, no. 5, pp. 1682-1685, 2008. (Pubitemid 351657214)
33. D. C. Vinh, D. Newby, H. Charest, and J. McDonald, "Evaluation of a commercial direct fluorescent-antibody assay for human metapneumovirus in respiratory specimens, " Journal of Clinical Microbiology, vol. 46, no. 5, pp. 1840-1841, 2008. (Pubitemid 351657238)
34. T. Ganzenmueller, J. Kluba, B. Hilfrich et al., "Comparison of the performance of direct fluorescent antibody staining, a point-of-care rapid antigen test and virus isolation with that of RT-PCR for the detection of novel 2009 influenza A (H1N1) virus in respiratory specimens, " Journal of Medical Microbiology, vol. 59, no. 6, pp. 713-717, 2010.
35. A. K. Shetty, E. Treynor, D. W. Hill, K. M. Gutierrez, A. Warford, and E. J. Baron, "Comparison of conventional viral cultures with direct fluorescent antibody stains for diagnosis of community-acquired respiratory virus infections in hospitalized children, " Pediatric Infectious Disease Journal, vol. 22, no. 9, pp. 789-794, 2003. (Pubitemid 37153072)
36. J. Barenfanger, C. Drake, T. Mueller, T. Troutt, J. O'Brien, and K. Guttman, "R-Mix cells are faster, at least as sensitive and marginally more costly than conventional cell lines for the detection of respiratory viruses, " Journal of Clinical Virology, vol. 22, no. 1, pp. 101-110, 2001. (Pubitemid 32551954)
37. P. R. LaSala, K. K. Bufton, N. Ismail, and M. B. Smith, "Prospective comparison of R-mixTM shell vial system with direct antigen tests and conventional cell culture for respiratory virus detection, " Journal of Clinical Virology, vol. 38, no. 3, pp. 210-216, 2007. (Pubitemid 46275532)
38. W. Wang, E. N. Butler, V. Veguilla et al., "Establishment of retroviral pseudotypes with influenza hemagglutinins from H1, H3, and H5 subtypes for sensitive and specific detection of neutralizing antibodies, " Journal of Virological Methods, vol. 153, no. 2, pp. 111-119, 2008.
39. R.Manji, M. Lotlikar, F. Zhang, and C. C. Ginocchio, "Clinical evaluation of NucliSENS magnetic extraction and NucliSENS analytical specific reagents for the real-time detection of respiratory syncytial virus (RSV) in paediatric respiratory specimens, " Journal of Clinical Pathology, vol. 62, no. 11, pp. 998-1002, 2009.
40. E. T.Martin, J. Taylor, J. Kuypers et al., "Detection of bocavirus in saliva of children with and without respiratory illness, " Journal of Clinical Microbiology, vol. 47, no. 12, pp. 4131-4132, 2009.
41. R. B. Clark, M. A. Lewinski, M. J. Loeffelholz, and R. J. Tibbetts, "Cumitech 31A, verification and validation of procedures, " in Clinical Microbiology Laboratory, S. E. Sharp, Ed., ASM Press, Washington, DC, USA, 2009.
42. K. J. Henrickson and C. B. Hall, "Diagnostic assays for respiratory syncytial virus disease, " Pediatric Infectious Disease Journal, vol. 26, no. 11, pp. S36-S40, 2007. (Pubitemid 350295028)
43. J. B. Mahony, "Detection of respiratory viruses by molecular methods, " Clinical Microbiology Reviews, vol. 21, no. 4, pp. 716-747, 2008.
44. T. Jartti, L. Jartti, V. Peltola, M. Waris, and O. Ruuskanen, "Identification of respiratory viruses in asymptomatic subjects: asymptomatic respiratory viral infections, " Pediatric Infectious Disease Journal, vol. 27, no. 12, pp. 1103-1107, 2008.
45. M. M. van der Zalm, B. E. van Ewijk, B. Wilbrink, C. S. P. M. Uiterwaal, T. F. W. Wolfs, and C. K. van der Ent, "Respiratory pathogens in children with and without respiratory symptoms, " Journal of Pediatrics, vol. 154, no. 3, pp. 396-400, 2009.
46. B. Winther, C. M. Alper, E. M. Mandel, W. J. Doyle, and J. O. Hendley, "Temporal relationships between colds, upper respiratory viruses detected by polymerase chain reaction, and otitis media in young children followed through a typical cold season, " Pediatrics, vol. 119, no. 6, pp. 1069-1075, 2007. (Pubitemid 46871260)
47. S. U. Kalu, M. Loeffelholz, E. Beck et al., "Persistence of adenovirus nucleic acids in nasopharyngeal secretions: a diagnostic conundrum, " Pediatric Infectious Disease Journal, vol. 29, no. 8, pp. 746-750, 2010.
48. T. Jartti, P. Lehtinen, T. Vuorinen, M. Koskenvuo, and O. Ruuskanen, "Persistence of rhinovirus and enterovirus RNA after acute respiratory illness in children, " Journal of Medical Virology, vol. 72, no. 4, pp. 695-699, 2004. (Pubitemid 38296085)
49. J. Jacques, H. Moret, F. Renois, N. Ĺev̂eque, J. Motte, and L. Andŕeoletti, "Human Bocavirus quantitative DNA detection in French children hospitalized for acute bronchiolitis, " Journal of Clinical Virology, vol. 43, no. 2, pp. 142-147, 2008.