-
1
-
-
0029670330
-
Improved green fluorescent protein by molecular evolution using DNA shuffling
-
Crameri, A., Whitehorn, E. A., Tate, E., and Stemmer, W. P. (1996) Improved green fluorescent protein by molecular evolution using DNA shuffling Nature Biotechnol. 14, 315-319
-
(1996)
Nature Biotechnol.
, vol.14
, pp. 315-319
-
-
Crameri, A.1
Whitehorn, E.A.2
Tate, E.3
Stemmer, W.P.4
-
2
-
-
30944467113
-
A guide to choosing fluorescent proteins
-
DOI 10.1038/nmeth819, PII N819
-
Shaner, N. C., Steinbach, P. A., and Tsien, R. Y. (2005) A guide to choosing fluorescent proteins Nature Methods 2, 905-909 (Pubitemid 43108726)
-
(2005)
Nature Methods
, vol.2
, Issue.12
, pp. 905-909
-
-
Shaner, N.C.1
Steinbach, P.A.2
Tsien, R.Y.3
-
3
-
-
0031663369
-
The green fluorescent protein
-
DOI 10.1146/annurev.biochem.67.1.509
-
Tsien, R. Y. (1998) The green fluorescent protein Annu. Rev. Biochem. 67, 509-544 (Pubitemid 28411137)
-
(1998)
Annual Review of Biochemistry
, vol.67
, pp. 509-544
-
-
Tsien, R.Y.1
-
4
-
-
0034562065
-
Crystal structure and refolding properties of the mutant F99S/M153T/V163A of the green fluorescent protein
-
Battistutta, R., Negro, A., and Zanotti, G. (2000) Crystal structure and refolding properties of the mutant F99S/M153T/V163A of the green fluorescent protein Proteins 41, 429-437
-
(2000)
Proteins
, vol.41
, pp. 429-437
-
-
Battistutta, R.1
Negro, A.2
Zanotti, G.3
-
5
-
-
0034601826
-
Folding of green fluorescent protein and the cycle3 mutant
-
Fukuda, H., Arai, M., and Kuwajima, K. (2000) Folding of green fluorescent protein and the cycle3 mutant Biochemistry 39, 12025-12032
-
(2000)
Biochemistry
, vol.39
, pp. 12025-12032
-
-
Fukuda, H.1
Arai, M.2
Kuwajima, K.3
-
6
-
-
0032532156
-
Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein
-
Wachter, R. M., Elsliger, M. A., Kallio, K., Hanson, G. T., and Remington, S. J. (1998) Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein Structure 6, 1267-1277 (Pubitemid 28485959)
-
(1998)
Structure
, vol.6
, Issue.10
, pp. 1267-1277
-
-
Wachter, R.M.1
Elsliger, M.-A.2
Kallio, K.3
Hanson, G.T.4
Remington, S.J.5
-
7
-
-
0029780351
-
The molecular structure of green fluorescent protein
-
Yang, F., Moss, L. G., and Phillips, G. N., Jr. (1996) The molecular structure of green fluorescent protein Nature Biotechnol. 14, 1246-1251 (Pubitemid 26332784)
-
(1996)
Nature Biotechnology
, vol.14
, Issue.10
, pp. 1246-1251
-
-
Yang, F.1
Moss, L.G.2
Phillips Jr., G.N.3
-
8
-
-
0029847806
-
Crystal structure of the Aequorea victoria green fluorescent protein
-
Ormo, M., Cubitt, A. B., Kallio, K., Gross, L. A., Tsien, R. Y., and Remington, S. J. (1996) Crystal structure of the Aequorea victoria green fluorescent protein Science 273, 1392-1395 (Pubitemid 26296528)
-
(1996)
Science
, vol.273
, Issue.5280
, pp. 1392-1395
-
-
Ormo, M.1
Cubitt, A.B.2
Kallio, K.3
Gross, L.A.4
Tsien, R.Y.5
Remington, S.J.6
-
9
-
-
0036489443
-
Green fluorescent protein (GFP): Applications, structure, and related photophysical behavior
-
DOI 10.1021/cr010142r
-
Zimmer, M. (2002) Green fluorescent protein (GFP): applications, structure, and related photophysical behavior Chem. Rev. 102, 759-781 (Pubitemid 35377613)
-
(2002)
Chemical Reviews
, vol.102
, Issue.3
, pp. 759-781
-
-
Zimmer, M.1
-
10
-
-
0019892005
-
Renaturation of Aequorea gree-fluorescent protein
-
Bokman, S. H. and Ward, W. W. (1981) Renaturation of Aequorea gree-fluorescent protein Biochem. Biophys. Res. Commun. 101, 1372-1380
-
(1981)
Biochem. Biophys. Res. Commun.
, vol.101
, pp. 1372-1380
-
-
Bokman, S.H.1
Ward, W.W.2
-
11
-
-
0020482348
-
Reversible denaturation of Aequorea green-fluorescent protein: Physical separation and characterization of the renatured protein
-
Ward, W. W. and Bokman, S. H. (1982) Reversible denaturation of Aequorea green-fluorescent protein: physical separation and characterization of the renatured protein Biochemistry 21, 4535-4540
-
(1982)
Biochemistry
, vol.21
, pp. 4535-4540
-
-
Ward, W.W.1
Bokman, S.H.2
-
12
-
-
23444431611
-
Green fluorescent protein as a marker for gene expression
-
Chalfie, M., Tu, Y., Euskirchen, G., Ward, W. W., and Prasher, D. C. (1994) Green fluorescent protein as a marker for gene expression Science 263, 802-805 (Pubitemid 24093206)
-
(1994)
Science
, vol.263
, Issue.5148
, pp. 802-805
-
-
Chalfie, M.1
Tu, Y.2
Euskirchen, G.3
Ward, W.W.4
Prasher, D.C.5
-
13
-
-
0037710130
-
High stability of Discosoma DsRed as compared to Aequorea EGFP
-
DOI 10.1021/bi034555t
-
Verkhusha, V. V., Kuznetsova, I. M., Stepanenko, O. V., Zaraisky, A. G., Shavlovsky, M. M., Turoverov, K. K., and Uversky, V. N. (2003) High stability of Discosoma DsRed as compared to Aequorea EGFP Biochemistry 42, 7879-7884 (Pubitemid 36807704)
-
(2003)
Biochemistry
, vol.42
, Issue.26
, pp. 7879-7884
-
-
Verkhusha, V.V.1
Kuznetsova, I.M.2
Stepanenko, O.V.3
Zaraisky, A.G.4
Shavlovsky, M.M.5
Turoverov, K.K.6
Uversky, V.N.7
-
14
-
-
84989716053
-
Spectral perturbations of the Aequorea green-fluorescent protein
-
Ward, W. W., Prentice, H. J., Roth, A. F., Cody, C. W., and Reeves, S. C. (1982) Spectral perturbations of the Aequorea green-fluorescent protein Photochem. Photobiol. 35, 803-808
-
(1982)
Photochem. Photobiol.
, vol.35
, pp. 803-808
-
-
Ward, W.W.1
Prentice, H.J.2
Roth, A.F.3
Cody, C.W.4
Reeves, S.C.5
-
15
-
-
34249657467
-
Stable Intermediate States and High Energy Barriers in the Unfolding of GFP
-
DOI 10.1016/j.jmb.2007.04.039, PII S0022283607005165
-
Huang, J. R., Craggs, T. D., Christodoulou, J., and Jackson, S. E. (2007) Stable intermediate states and high energy barriers in the unfolding of GFP J. Mol. Biol. 370, 356-371 (Pubitemid 46829211)
-
(2007)
Journal of Molecular Biology
, vol.370
, Issue.2
, pp. 356-371
-
-
Huang, J.-r.1
Craggs, T.D.2
Christodoulou, J.3
Jackson, S.E.4
-
16
-
-
8344290520
-
Acid denaturation and refolding of green fluorescent protein
-
DOI 10.1021/bi048733+
-
Enoki, S., Saeki, K., Maki, K., and Kuwajima, K. (2004) Acid denaturation and refolding of green fluorescent protein Biochemistry 43, 14238-14248 (Pubitemid 39482773)
-
(2004)
Biochemistry
, vol.43
, Issue.44
, pp. 14238-14248
-
-
Enoki, S.1
Saeki, K.2
Maki, K.3
Kuwajima, K.4
-
17
-
-
9744241605
-
Comparative studies on the structure and stability of fluorescent proteins EGFP, zFP506, mRFP1, "dimer2", and DsRed1
-
DOI 10.1021/bi048725t
-
Stepanenko, O. V., Verkhusha, V. V., Kazakov, V. I., Shavlovsky, M. M., Kuznetsova, I. M., Uversky, V. N., and Turoverov, K. K. (2004) Comparative studies on the structure and stability of fluorescent proteins EGFP, zFP506, mRFP1, "dimer2", and DsRed1 Biochemistry 43, 14913-14923 (Pubitemid 39587467)
-
(2004)
Biochemistry
, vol.43
, Issue.47
, pp. 14913-14923
-
-
Stepanenko, O.V.1
Verkhusha, V.V.2
Kazakov, V.I.3
Shavlovsky, M.M.4
Kuznetsova, I.M.5
Uversky, V.N.6
Turoverov, K.K.7
-
18
-
-
34548816178
-
The Rough Energy Landscape of Superfolder GFP Is Linked to the Chromophore
-
DOI 10.1016/j.jmb.2007.07.071, PII S0022283607010509
-
Andrews, B. T., Schoenfish, A. R., Roy, M., Waldo, G., and Jennings, P. A. (2007) The rough energy landscape of superfolder GFP is linked to the chromophore J. Mol. Biol. 373, 476-490 (Pubitemid 47445575)
-
(2007)
Journal of Molecular Biology
, vol.373
, Issue.2
, pp. 476-490
-
-
Andrews, B.T.1
Schoenfish, A.R.2
Roy, M.3
Waldo, G.4
Jennings, P.A.5
-
19
-
-
0037325759
-
Backbone H(N), N, C(alpha) and C(beta) assignment of the GFPuv mutant
-
Georgescu, J., Rehm, T., Wiehler, J., Steipe, B., and Holak, T. A. (2003) Backbone H(N), N, C(alpha) and C(beta) assignment of the GFPuv mutant J. Biomol. NMR 25, 161-162
-
(2003)
J. Biomol. NMR
, vol.25
, pp. 161-162
-
-
Georgescu, J.1
Rehm, T.2
Wiehler, J.3
Steipe, B.4
Holak, T.A.5
-
20
-
-
0038745308
-
1H, 15N and 13C backbone assignment of the green fluorescent protein (GFP)
-
Khan, F., Stott, K., and Jackson, S. (2003) 1H, 15N and 13C backbone assignment of the green fluorescent protein (GFP) J. Biomol. NMR 26, 281-282
-
(2003)
J. Biomol. NMR
, vol.26
, pp. 281-282
-
-
Khan, F.1
Stott, K.2
Jackson, S.3
-
21
-
-
78650263110
-
Studies of irreversible heat denaturation of green fluorescent protein by differential scanning microcalorimetry
-
Melnik, T., Povarnitsyna, T., Solonenko, H., and Melnik, B. (2011) Studies of irreversible heat denaturation of green fluorescent protein by differential scanning microcalorimetry Thermochim. Acta 512, 71-75
-
(2011)
Thermochim. Acta
, vol.512
, pp. 71-75
-
-
Melnik, T.1
Povarnitsyna, T.2
Solonenko, H.3
Melnik, B.4
-
22
-
-
0031616362
-
Protein disorder and the evolution of molecular recognition: Theory, predictions and observations
-
Dunker, A. K., Garner, E., Guilliot, S., Romero, P., Albrecht, K., Hart, J., Obradovic, Z., Kissinger, C., and Villafranca, J. E. (1998) Protein disorder and the evolution of molecular recognition: theory, predictions and observations Pac. Symp. Biocomput. 473-484
-
(1998)
Pac. Symp. Biocomput.
, pp. 473-484
-
-
Dunker, A.K.1
Garner, E.2
Guilliot, S.3
Romero, P.4
Albrecht, K.5
Hart, J.6
Obradovic, Z.7
Kissinger, C.8
Villafranca, J.E.9
-
23
-
-
0031633365
-
Thousands of proteins likely to have long disordered regions
-
Romero, P., Obradovic, Z., Kissinger, C. R., Villafranca, J. E., Garner, E., Guilliot, S., and Dunker, A. K. (1998) Thousands of proteins likely to have long disordered regions Pac. Symp. Biocomput. 437-448
-
(1998)
Pac. Symp. Biocomput.
, pp. 437-448
-
-
Romero, P.1
Obradovic, Z.2
Kissinger, C.R.3
Villafranca, J.E.4
Garner, E.5
Guilliot, S.6
Dunker, A.K.7
-
24
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
DOI 10.1006/jmbi.1999.3110
-
Wright, P. E. and Dyson, H. J. (1999) Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm J. Mol. Biol. 293, 321-331 (Pubitemid 29516173)
-
(1999)
Journal of Molecular Biology
, vol.293
, Issue.2
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
25
-
-
0034669882
-
Why are "natively unfolded" proteins unstructured under physiologic conditions?
-
Uversky, V. N., Gillespie, J. R., and Fink, A. L. (2000) Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 41, 415-427
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
26
-
-
0035022941
-
Intrinsically disordered protein
-
DOI 10.1016/S1093-3263(00)00138-8, PII S1093326300001388
-
Dunker, A. K., Lawson, J. D., Brown, C. J., Williams, R. M., Romero, P., Oh, J. S., Oldfield, C. J., Campen, A. M., Ratliff, C. M., Hipps, K. W., Ausio, J., Nissen, M. S., Reeves, R., Kang, C., Kissinger, C. R., Bailey, R. W., Griswold, M. D., Chiu, W., Garner, E. C., and Obradovic, Z. (2001) Intrinsically disordered protein J. Mol. Graphics Modell. 19, 26-59 (Pubitemid 32411501)
-
(2001)
Journal of Molecular Graphics and Modelling
, vol.19
, Issue.1
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
Oh, J.S.6
Oldfield, C.J.7
Campen, A.M.8
Ratliff, C.M.9
Hipps, K.W.10
Ausio, J.11
Nissen, M.S.12
Reeves, R.13
Kang, C.14
Kissinger, C.R.15
Bailey, R.W.16
Griswold, M.D.17
Chiu, W.18
Garner, E.C.19
Obradovic, Z.20
more..
-
27
-
-
0034867975
-
The protein trinity - Linking function and disorder
-
DOI 10.1038/nbt0901-805
-
Dunker, A. K. and Obradovic, Z. (2001) The protein trinity - linking function and disorder Nature Biotechnol. 19, 805-806 (Pubitemid 32816745)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.9
, pp. 805-806
-
-
Dunker, A.K.1
Obradovic, Z.2
-
28
-
-
0036803243
-
Intrinsically unstructured proteins
-
DOI 10.1016/S0968-0004(02)02169-2, PII S0968000402021692
-
Tompa, P. (2002) Intrinsically unstructured proteins Trends Biochem. Sci. 27, 527-533 (Pubitemid 35279598)
-
(2002)
Trends in Biochemical Sciences
, vol.27
, Issue.10
, pp. 527-533
-
-
Tompa, P.1
-
29
-
-
0037188377
-
Intrinsic disorder and protein function
-
DOI 10.1021/bi012159+
-
Dunker, A. K., Brown, C. J., Lawson, J. D., Iakoucheva, L. M., and Obradovic, Z. (2002) Intrinsic disorder and protein function Biochemistry 41, 6573-6582 (Pubitemid 34547347)
-
(2002)
Biochemistry
, vol.41
, Issue.21
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
30
-
-
0036402827
-
Identification and functions of usefully disordered proteins
-
DOI 10.1016/S0065-3233(02)62004-2
-
Dunker, A. K., Brown, C. J., and Obradovic, Z. (2002) Identification and functions of usefully disordered proteins Adv. Protein Chem. 62, 25-49 (Pubitemid 35204867)
-
(2002)
Advances in Protein Chemistry
, vol.62
, pp. 25-49
-
-
Dunker, A.K.1
Brown, C.J.2
Obradovic, Z.3
-
31
-
-
0036408751
-
Intrinsic disorder in cell-signaling and cancer-associated proteins
-
DOI 10.1016/S0022-2836(02)00969-5
-
Iakoucheva, L. M., Brown, C. J., Lawson, J. D., Obradovic, Z., and Dunker, A. K. (2002) Intrinsic disorder in cell-signaling and cancer-associated proteins J. Mol. Biol. 323, 573-584 (Pubitemid 35283681)
-
(2002)
Journal of Molecular Biology
, vol.323
, Issue.3
, pp. 573-584
-
-
Iakoucheva, L.M.1
Brown, C.J.2
Lawson, J.D.3
Obradovic, Z.4
Dunker, A.K.5
-
32
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
DOI 10.1110/ps.4210102
-
Uversky, V. N. (2002) Natively unfolded proteins: a point where biology waits for physics Protein Sci. 11, 739-756 (Pubitemid 34241284)
-
(2002)
Protein Science
, vol.11
, Issue.4
, pp. 739-756
-
-
Uversky, V.N.1
-
33
-
-
0036153571
-
What does it mean to be natively unfolded?
-
DOI 10.1046/j.0014-2956.2001.02649.x
-
Uversky, V. N. (2002) What does it mean to be natively unfolded? Eur. J. Biochem. 269, 2-12 (Pubitemid 34107333)
-
(2002)
European Journal of Biochemistry
, vol.269
, Issue.1
, pp. 2-12
-
-
Uversky, V.N.1
-
34
-
-
0141861067
-
Protein folding revisited. A polypeptide chain at the folding - Misfolding - Nonfolding cross-roads: Which way to go?
-
DOI 10.1007/s00018-003-3096-6
-
Uversky, V. N. (2003) Protein folding revisited. A polypeptide chain at the folding-misfolding-nonfolding cross-roads: which way to go? Cell. Mol. Life Sci. 60, 1852-1871 (Pubitemid 37222583)
-
(2003)
Cellular and Molecular Life Sciences
, vol.60
, Issue.9
, pp. 1852-1871
-
-
Uversky, V.N.1
-
35
-
-
0036468397
-
Coupling of folding and binding for unstructured proteins
-
DOI 10.1016/S0959-440X(02)00289-0
-
Dyson, H. J. and Wright, P. E. (2002) Coupling of folding and binding for unstructured proteins Curr. Opin. Struct. Biol. 12, 54-60 (Pubitemid 34142721)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.1
, pp. 54-60
-
-
Dyson, H.J.1
Wright, P.E.2
-
36
-
-
13844255387
-
Natively unfolded proteins
-
DOI 10.1016/j.sbi.2005.01.002
-
Fink, A. L. (2005) Natively unfolded proteins Curr. Opin. Struct. Biol. 15, 35-41 (Pubitemid 40249507)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.1 SPEC. ISS.
, pp. 35-41
-
-
Fink, A.L.1
-
37
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
DOI 10.1038/nrm1589
-
Dyson, H. J. and Wright, P. E. (2005) Intrinsically unstructured proteins and their functions Nat. Rev. Mol. Cell Biol. 6, 197-208 (Pubitemid 40314921)
-
(2005)
Nature Reviews Molecular Cell Biology
, vol.6
, Issue.3
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
38
-
-
20444376186
-
The interplay between structure and function in intrinsically unstructured proteins
-
DOI 10.1016/j.febslet.2005.03.072, PII S0014579305004242
-
Tompa, P. (2005) The interplay between structure and function in intrinsically unstructured proteins FEBS Lett. 579, 3346-3354 (Pubitemid 40804685)
-
(2005)
FEBS Letters
, vol.579
, Issue.15
, pp. 3346-3354
-
-
Tompa, P.1
-
39
-
-
27144464910
-
Flexible nets: The roles of intrinsic disorder in protein interaction networks
-
DOI 10.1111/j.1742-4658.2005.04948.x
-
Dunker, A. K., Cortese, M. S., Romero, P., Iakoucheva, L. M., and Uversky, V. N. (2005) Flexible nets. The roles of intrinsic disorder in protein interaction networks FEBS J. 272, 5129-5148 (Pubitemid 41503146)
-
(2005)
FEBS Journal
, vol.272
, Issue.20
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
40
-
-
25144472591
-
Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling
-
DOI 10.1002/jmr.747
-
Uversky, V. N., Oldfield, C. J., and Dunker, A. K. (2005) Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling J. Mol. Recognit. 18, 343-384 (Pubitemid 41341287)
-
(2005)
Journal of Molecular Recognition
, vol.18
, Issue.5
, pp. 343-384
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
41
-
-
33847795359
-
Intrinsic disorder and functional proteomics
-
DOI 10.1529/biophysj.106.094045
-
Radivojac, P., Iakoucheva, L. M., Oldfield, C. J., Obradovic, Z., Uversky, V. N., and Dunker, A. K. (2007) Intrinsic disorder and functional proteomics Biophys. J. 92, 1439-1456 (Pubitemid 46393458)
-
(2007)
Biophysical Journal
, vol.92
, Issue.5
, pp. 1439-1456
-
-
Radivojac, P.1
Iakoucheva, L.M.2
Oldfield, C.J.3
Obradovic, Z.4
Uversky, V.N.5
Dunker, A.K.6
-
42
-
-
33846099868
-
DisProt: The Database of Disordered Proteins
-
Sickmeier, M., Hamilton, J. A., LeGall, T., Vacic, V., Cortese, M. S., Tantos, A., Szabo, B., Tompa, P., Chen, J., Uversky, V. N., Obradovic, Z., and Dunker, A. K. (2007) DisProt: the Database of Disordered Proteins Nucleic Acids Res. 35, D786-793
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 786-793
-
-
Sickmeier, M.1
Hamilton, J.A.2
Legall, T.3
Vacic, V.4
Cortese, M.S.5
Tantos, A.6
Szabo, B.7
Tompa, P.8
Chen, J.9
Uversky, V.N.10
Obradovic, Z.11
Dunker, A.K.12
-
43
-
-
33847200077
-
Intrinsic disorder in the Protein Data Bank
-
Le Gall, T., Romero, P. R., Cortese, M. S., Uversky, V. N., and Dunker, A. K. (2007) Intrinsic disorder in the Protein Data Bank J. Biomol. Struct. Dyn. 24, 325-342
-
(2007)
J. Biomol. Struct. Dyn.
, vol.24
, pp. 325-342
-
-
Le Gall, T.1
Romero, P.R.2
Cortese, M.S.3
Uversky, V.N.4
Dunker, A.K.5
-
44
-
-
34249282661
-
Functional anthology of intrinsic disorder. 2. cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions
-
DOI 10.1021/pr060393m
-
Vucetic, S., Xie, H., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Obradovic, Z., and Uversky, V. N. (2007) Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions J. Proteome Res. 6, 1899-1916 (Pubitemid 46814513)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.5
, pp. 1899-1916
-
-
Vucetic, S.1
Xie, H.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
Obradovic, Z.6
Uversky, V.N.7
-
45
-
-
33847783298
-
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins
-
DOI 10.1021/pr060394e
-
Xie, H., Vucetic, S., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Obradovic, Z., and Uversky, V. N. (2007) Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins J. Proteome Res. 6, 1917-1932 (Pubitemid 46814514)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.5
, pp. 1917-1932
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
Obradovic, Z.6
Uversky, V.N.7
-
46
-
-
33847768609
-
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
-
DOI 10.1021/pr060392u
-
Xie, H., Vucetic, S., Iakoucheva, L. M., Oldfield, C. J., Dunker, A. K., Uversky, V. N., and Obradovic, Z. (2007) Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions J. Proteome Res. 6, 1882-1898 (Pubitemid 46814512)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.5
, pp. 1882-1898
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
Uversky, V.N.6
Obradovic, Z.7
-
47
-
-
50049097448
-
Intrinsic disorder in scaffold proteins: Getting more from less
-
Cortese, M. S., Uversky, V. N., and Keith Dunker, A. (2008) Intrinsic disorder in scaffold proteins: getting more from less Prog. Biophys. Mol. Biol. 98, 85-106
-
(2008)
Prog. Biophys. Mol. Biol.
, vol.98
, pp. 85-106
-
-
Cortese, M.S.1
Uversky, V.N.2
Keith Dunker, A.3
-
48
-
-
52249085709
-
The unfoldomics decade: An update on intrinsically disordered proteins
-
Dunker, A. K., Oldfield, C. J., Meng, J., Romero, P., Yang, J. Y., Chen, J. W., Vacic, V., Obradovic, Z., and Uversky, V. N. (2008) The unfoldomics decade: an update on intrinsically disordered proteins BMC Genomics 9 (Suppl 2) S1
-
(2008)
BMC Genomics
, vol.9
, Issue.SUPPL 2
, pp. 1
-
-
Dunker, A.K.1
Oldfield, C.J.2
Meng, J.3
Romero, P.4
Yang, J.Y.5
Chen, J.W.6
Vacic, V.7
Obradovic, Z.8
Uversky, V.N.9
-
49
-
-
57049095821
-
Function and structure of inherently disordered proteins
-
not supplied.
-
Dunker, A. K., Silman, I., Uversky, V. N., and Sussman, J. L. Function and structure of inherently disordered proteins. Curr. Opin. Struct. Biol. 2008, not supplied.
-
(2008)
Curr. Opin. Struct. Biol.
-
-
Dunker, A.K.1
Silman, I.2
Uversky, V.N.3
Sussman, J.L.4
-
50
-
-
40949105259
-
Signal transduction via unstructured protein conduits
-
DOI 10.1038/nchembio0408-229, PII NCHEMBIO0408229
-
Dunker, A. K. and Uversky, V. N. (2008) Signal transduction via unstructured protein conduits Nat. Chem. Biol. 4, 229-230 (Pubitemid 351414840)
-
(2008)
Nature Chemical Biology
, vol.4
, Issue.4
, pp. 229-230
-
-
Dunker, A.K.1
Uversky, V.N.2
-
51
-
-
56249101714
-
Malleable machines take shape in eukaryotic transcriptional regulation
-
Fuxreiter, M., Tompa, P., Simon, I., Uversky, V. N., Hansen, J. C., and Asturias, F. J. (2008) Malleable machines take shape in eukaryotic transcriptional regulation Nat. Chem. Biol. 4, 728-737
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 728-737
-
-
Fuxreiter, M.1
Tompa, P.2
Simon, I.3
Uversky, V.N.4
Hansen, J.C.5
Asturias, F.J.6
-
52
-
-
48249097986
-
Intrinsically disordered proteins in human diseases: Introducing the D2 concept
-
Uversky, V. N., Oldfield, C. J., and Dunker, A. K. (2008) Intrinsically disordered proteins in human diseases: introducing the D2 concept Annu. Rev. Biophys. 37, 215-246
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 215-246
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
53
-
-
33748258328
-
A practical overview of protein disorder prediction methods
-
DOI 10.1002/prot.21075
-
Ferron, F., Longhi, S., Canard, B., and Karlin, D. (2006) A practical overview of protein disorder prediction methods Proteins 65, 1-14 (Pubitemid 44320610)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 1-14
-
-
Ferron, F.1
Longhi, S.2
Canard, B.3
Karlin, D.4
-
54
-
-
34247595555
-
Prediction of protein disorder at the domain level
-
DOI 10.2174/138920307780363406
-
Dosztanyi, Z., Sandor, M., Tompa, P., and Simon, I. (2007) Prediction of protein disorder at the domain level Curr. Protein Pept. Sci. 8, 161-171 (Pubitemid 46681753)
-
(2007)
Current Protein and Peptide Science
, vol.8
, Issue.2
, pp. 161-171
-
-
Dosztanyi, Z.1
Sandor, M.2
Tompa, P.3
Simon, I.4
-
55
-
-
49649123303
-
Prediction of protein disorder
-
Dosztanyi, Z. and Tompa, P. (2008) Prediction of protein disorder Methods Mol. Biol. 426, 103-115
-
(2008)
Methods Mol. Biol.
, vol.426
, pp. 103-115
-
-
Dosztanyi, Z.1
Tompa, P.2
-
56
-
-
38049089909
-
A computational investigation of allostery in the catabolite activator protein
-
Li, L., Uversky, V. N., Dunker, A. K., and Meroueh, S. O. (2007) A computational investigation of allostery in the catabolite activator protein J. Am. Chem. Soc. 129, 15668-15676
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 15668-15676
-
-
Li, L.1
Uversky, V.N.2
Dunker, A.K.3
Meroueh, S.O.4
-
57
-
-
80052500064
-
Computational grafting of protein interaction sites with a new algorithm that incorporates receptor flexibility
-
not supplied.
-
Liang, S., Li, L., Hsu, W.-L., Zhou, Y., Dunker, A. K., Uversky, V. N., and Meroueh, S. O. Computational grafting of protein interaction sites with a new algorithm that incorporates receptor flexibility. Biochemistry 2008, not supplied.
-
(2008)
Biochemistry
-
-
Liang, S.1
Li, L.2
Hsu, W.-L.3
Zhou, Y.4
Dunker, A.K.5
Uversky, V.N.6
Meroueh, S.O.7
-
58
-
-
73049097841
-
Solution structure and dynamics of the chimeric SH3 domains, SHH- and SHA-"Bergeracs
-
Kutyshenko, V. P., Prokhorov, D. A., Timchenko, M. A., Kudrevatykh, Y. A., Gushchina, L. V., Khristoforov, V. S., Filimonov, V. V., and Uversky, V. N. (2009) Solution structure and dynamics of the chimeric SH3 domains, SHH- and SHA-"Bergeracs Biochim. Biophys. Acta 1794, 1813-1822
-
(2009)
Biochim. Biophys. Acta
, vol.1794
, pp. 1813-1822
-
-
Kutyshenko, V.P.1
Prokhorov, D.A.2
Timchenko, M.A.3
Kudrevatykh, Y.A.4
Gushchina, L.V.5
Khristoforov, V.S.6
Filimonov, V.V.7
Uversky, V.N.8
-
59
-
-
0034544925
-
Differential scanning microcalorimetr SCAL-1
-
Senin, A. A., Potekhin, S. A., Tiktopulo, E. I., and Filomonov, V. V. (2000) Differential scanning microcalorimetr SCAL-1 J. Therm. Anal. Calorim. 62, 153-160
-
(2000)
J. Therm. Anal. Calorim.
, vol.62
, pp. 153-160
-
-
Senin, A.A.1
Potekhin, S.A.2
Tiktopulo, E.I.3
Filomonov, V.V.4
-
60
-
-
0022555893
-
Scanning microcalorimetry in studying temperature-induced changes in proteins
-
Privalov, P. L. and Potekhin, S. A. (1986) Scanning microcalorimetry in studying temperature-induced changes in proteins Methods Enzymol. 131, 4-51 (Pubitemid 16002194)
-
(1986)
Methods in Enzymology
, vol.131
, pp. 4-51
-
-
Privalov, P.L.1
Potekhin, S.A.2
-
61
-
-
0031467295
-
Analysis of differential scanning calorimetry data for proteins. Criteria of validity of one-step mechanism of irreversible protein denaturation
-
DOI 10.1016/S0301-4622(97)80552-2
-
Kurganov, B. I., Lyubarev, A. E., Sanchez-Ruiz, J. M., and Shnyrov, V. L. (1997) Analysis of differential scanning calorimetry data for proteins. Criteria of validity of one-step mechanism of irreversible protein denaturation Biophys. Chem. 69, 125-135 (Pubitemid 28044129)
-
(1997)
Biophysical Chemistry
, vol.69
, Issue.2-3
, pp. 125-135
-
-
Kurganov, B.I.1
Lyubarev, A.E.2
Sanchez-Ruiz, J.M.3
Shnyrov, V.L.4
-
62
-
-
0032572516
-
Folding under inequilibrium conditions as a possible reason for partial irreversibility of heat-denatured proteins: Computer simulation study
-
DOI 10.1016/S0301-4622(98)00149-5, PII S0301462298001495
-
Potekhin, S. A. and Kovrigin, E. L. (1998) Folding under inequilibrium conditions as a possible reason for partial irreversibility of heat-denatured proteins: computer simulation study Biophys. Chem. 73, 241-248 (Pubitemid 28337018)
-
(1998)
Biophysical Chemistry
, vol.73
, Issue.3
, pp. 241-248
-
-
Potekhin, S.A.1
Kovrigin, E.L.2
-
63
-
-
0032018830
-
[Influence of kinetic factors on heat denaturation and renaturation of biopolymers]
-
Potekhin, S. A. and Kovrigin, E. L. (1998) [Influence of kinetic factors on heat denaturation and renaturation of biopolymers] Biofizika 43, 223-232
-
(1998)
Biofizika
, vol.43
, pp. 223-232
-
-
Potekhin, S.A.1
Kovrigin, E.L.2
-
64
-
-
0024281290
-
Differential scanning calorimetry of the irreversible thermal denaturation of thermolysin
-
Sanchez-Ruiz, J. M., Lopez-Lacomba, J. L., Cortijo, M., and Mateo, P. L. (1988) Differential scanning calorimetry of the irreversible thermal denaturation of thermolysin Biochemistry 27, 1648-1652
-
(1988)
Biochemistry
, vol.27
, pp. 1648-1652
-
-
Sanchez-Ruiz, J.M.1
Lopez-Lacomba, J.L.2
Cortijo, M.3
Mateo, P.L.4
-
65
-
-
0032498925
-
Irreversible thermal denaturation of uridine phosphorylase from Escherichia coli K-12
-
DOI 10.1016/S0301-4622(97)00133-6, PII S0301462297001336
-
Lyubarev, A. E., Kurganov, B. I., Burlakova, A. A., and Orlov, V. N. (1998) Irreversible thermal denaturation of uridine phosphorylase from Escherichia coli K-12 Biophys. Chem. 70, 247-257 (Pubitemid 28144437)
-
(1998)
Biophysical Chemistry
, vol.70
, Issue.3
, pp. 247-257
-
-
Lyubarev, A.E.1
Kurganov, B.I.2
Burlakova, A.A.3
Orlov, V.N.4
-
66
-
-
0032040048
-
Modeling of irreversible thermal protein denaturation at varying temperature. I. The model involving two consecutive irreversible steps
-
Lyubarev, A. E. and Kurganov, B. I. (1998) Modeling of irreversible thermal protein denaturation at varying temperature. I. The model involving two consecutive irreversible steps Biochemistry (Moscow) 63, 434-440 (Pubitemid 128588154)
-
(1998)
Biochemistry (Moscow)
, vol.63
, Issue.4
, pp. 434-440
-
-
Lyubarev, A.E.1
Kurganov, B.I.2
-
67
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22, 2577-2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
68
-
-
76849087968
-
PONDR-FIT: A meta-predictor of intrinsically disordered amino acids
-
Xue, B., Dunbrack, R. L., Williams, R. W., Dunker, A. K., and Uversky, V. N. (2010) PONDR-FIT: a meta-predictor of intrinsically disordered amino acids Biochim. Biophys. Acta 1804, 996-1010
-
(2010)
Biochim. Biophys. Acta
, vol.1804
, pp. 996-1010
-
-
Xue, B.1
Dunbrack, R.L.2
Williams, R.W.3
Dunker, A.K.4
Uversky, V.N.5
-
69
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero, P., Obradovic, Z., Li, X., Garner, E. C., Brown, C. J., and Dunker, A. K. (2001) Sequence complexity of disordered protein Proteins 42, 38-48
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradovic, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
70
-
-
14544299774
-
Optimizing long intrinsic disorder predictors with protein evolutionary information
-
DOI 10.1142/S0219720005000886, PII S0219720005000886
-
Peng, K., Vucetic, S., Radivojac, P., Brown, C. J., Dunker, A. K., and Obradovic, Z. (2005) Optimizing long intrinsic disorder predictors with protein evolutionary information J. Bioinform. Comput. Biol. 3, 35-60 (Pubitemid 40305483)
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, Issue.1
, pp. 35-60
-
-
Peng, K.1
Vucetic, S.2
Radivojac, P.3
Brown, C.J.4
Dunker, A.K.5
Obradovic, Z.6
-
71
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng, K., Radivojac, P., Vucetic, S., Dunker, A. K., and Obradovic, Z. (2006) Length-dependent prediction of protein intrinsic disorder BMC Bioinformatics 7, 208
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradovic, Z.5
-
72
-
-
24044515001
-
FoldIndex©: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
DOI 10.1093/bioinformatics/bti537
-
Prilusky, J., Felder, C. E., Zeev-Ben-Mordehai, T., Rydberg, E. H., Man, O., Beckmann, J. S., Silman, I., and Sussman, J. L. (2005) FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded Bioinformatics 21, 3435-3438 (Pubitemid 41222454)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3435-3438
-
-
Prilusky, J.1
Felder, C.E.2
Zeev-Ben-Mordehai, T.3
Rydberg, E.H.4
Man, O.5
Beckmann, J.S.6
Silman, I.7
Sussman, J.L.8
-
73
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
DOI 10.1016/j.jmb.2005.01.071
-
Dosztanyi, Z., Csizmok, V., Tompa, P., and Simon, I. (2005) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins J. Mol. Biol. 347, 827-839 (Pubitemid 40357923)
-
(2005)
Journal of Molecular Biology
, vol.347
, Issue.4
, pp. 827-839
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
74
-
-
52249124593
-
TOP-IDP-scale: A new amino acid scale measuring propensity for intrinsic disorder
-
Campen, A., Williams, R. M., Brown, C. J., Meng, J., Uversky, V. N., and Dunker, A. K. (2008) TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder Protein Pept. Lett. 15, 956-963
-
(2008)
Protein Pept. Lett.
, vol.15
, pp. 956-963
-
-
Campen, A.1
Williams, R.M.2
Brown, C.J.3
Meng, J.4
Uversky, V.N.5
Dunker, A.K.6
-
75
-
-
67049119327
-
Prediction of protein binding regions in disordered proteins
-
Meszaros, B., Simon, I., and Dosztanyi, Z. (2009) Prediction of protein binding regions in disordered proteins PLoS Comput. Biol. 5, e1000376
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000376
-
-
Meszaros, B.1
Simon, I.2
Dosztanyi, Z.3
-
76
-
-
70349996473
-
ANCHOR: Web server for predicting protein binding regions in disordered proteins
-
Dosztanyi, Z., Meszaros, B., and Simon, I. (2009) ANCHOR: web server for predicting protein binding regions in disordered proteins Bioinformatics 25, 2745-2746
-
(2009)
Bioinformatics
, vol.25
, pp. 2745-2746
-
-
Dosztanyi, Z.1
Meszaros, B.2
Simon, I.3
-
77
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
DOI 10.1093/bioinformatics/bti541
-
Dosztanyi, Z., Csizmok, V., Tompa, P., and Simon, I. (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content Bioinformatics 21, 3433-3434 (Pubitemid 41222453)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
78
-
-
0018588511
-
Stability of proteins: Small globular proteins
-
Privalov, P. L. (1979) Stability of proteins: small globular proteins Adv. Protein Chem. 33, 167-241
-
(1979)
Adv. Protein Chem.
, vol.33
, pp. 167-241
-
-
Privalov, P.L.1
-
79
-
-
0025212107
-
Evidence for a molten globule state as a general intermediate in protein folding
-
DOI 10.1016/0014-5793(90)80143-7
-
Ptitsyn, O. B., Pain, R. H., Semisotnov, G. V., Zerovnik, E., and Razgulyaev, O. I. (1990) Evidence for a molten globule state as a general intermediate in protein folding FEBS Lett. 262, 20-24 (Pubitemid 20104250)
-
(1990)
FEBS Letters
, vol.262
, Issue.1
, pp. 20-24
-
-
Ptitsyn, O.B.1
Pain, R.H.2
Semisotnov, G.V.3
Zerovnik, E.4
Razgulyaev, O.I.5
-
81
-
-
0028329347
-
Thermodynamic puzzle of apomyoglobin unfolding
-
DOI 10.1006/jmbi.1994.1085
-
Griko, Y. V. and Privalov, P. L. (1994) Thermodynamic puzzle of apomyoglobin unfolding J. Mol. Biol. 235, 1318-1325 (Pubitemid 24148934)
-
(1994)
Journal of Molecular Biology
, vol.235
, Issue.4
, pp. 1318-1325
-
-
Griko, Y.V.1
Privalov, P.L.2
|