Comprehensive and rapid real-time PCR analysis of 21 foodborne outbreaks

International Journal of Microbiology

Volumn , Issue , 2009, Pages

  Fukushima, Hiroshi ^a   Katsube, Kazunori ^a   Tsunomori, Yoshie ^a   Kishi, Ryoko ^a   Atsuta, Junko ^a   Akiba, Yuko ^a  

^a SHIMANE PREFECTURAL INSTITUTE OF PUBLIC HEALTH AND ENVIRONMENTAL SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 80052432635     PISSN: 1687918X     EISSN: 16879198     Source Type: Journal    
DOI: 10.1155/2009/917623     Document Type: Article

References (29)

1. L. Fenicia, F. Anniballi, D. De Medici, E. Delibato, and P. Aureli, "SYBR green real-time PCR method to detect Clostridium botulinum type A, " Applied and Environmental Microbiology, vol. 73, no. 9, pp. 2891-2896, 2007. (Pubitemid 46718571)
2. I. Abubakar, L. Irvine, C. F. Aldus, et al., "A systematic review of the clinical, public health and cost-effectiveness of rapid diagnostic tests for the detection and identification of bacterial intestinal pathogens in faeces and food, " Health Technology Assessment, vol. 11, no. 36, pp. 1-216, 2007.
3. I. M. Mackay, "Real-time PCR in the microbiology laboratory, " Clinical Microbiology and Infection, vol. 10, no. 3, pp. 190-212, 2004. (Pubitemid 38379958)
4. M. Fricker, U. Messelḧaußer, U. Busch, S. Scherer, and M. Ehling-Schulz, "Diagnostic real-time PCR assays for the detection of emetic Bacillus cereus strains in foods and recent foodborne outbreaks, " Applied and Environmental Microbiology, vol. 73, no. 6, pp. 1892-1898, 2007. (Pubitemid 46449072)
5. J. Hoorfar, P. Ahrens, andP. Radstrom, "Automated 5- nuclease PCR assay for identification of Salmonella enterica, " Journal of Clinical Microbiology, vol. 38, no. 9, pp. 3429-3435, 2000.
6. Y. Iijima, N. T. Asako, M. Aihara, and K. Hayashi, "Improvement in the detection rate of diarrhoeagenic bacteria in human stool specimens by a rapid real-time PCR assay, " Journal of Medical Microbiology, vol. 53, no. 7, pp. 617-622, 2004. (Pubitemid 38932358)
7. H. J. M. Aarts, R. G. Joosten, M. H. C. Henkens, H. Stegeman, and A. H. A. M. van Hoek, "Rapid duplex PCR assay for the detection of pathogenic Yersinia enterocolitica strains, " Journal of Microbiological Methods, vol. 47, no. 2, pp. 209-217, 2001. (Pubitemid 32907480)
8. H. K. Nogva, A. Bergh, A. Holck, and K. Rudi, "Application of the 5-Nuclease PCR assay in evaluation and development of methods for quantitative detection of Campylobacter jejuni, " Applied and Environmental Microbiology, vol. 66, no. 9, pp. 4029-4036, 2000.
9. D. De Medici, L. Croci, E. Delibato, S. Di Pasquale, E. Filetici, and L. Toti, "Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype Enteritidis in poultry, " Applied and EnvironmentalMicrobiology, vol. 69, no. 6, pp. 3456-3461, 2003. (Pubitemid 36693354)
10. H. Fukushima, Y. Tsunomori, and R. Seki, "Duplex realtime SYBR green PCR assays for detection of 17 species of food- or waterborne pathogens in stools, " Journal of Clinical Microbiology, vol. 41, no. 11, pp. 5134-5146, 2003. (Pubitemid 37429927)
11. H. Fukushima, K. Katsube, Y. Hata, R. Kishi, and S. Fujiwara, "Rapid separation and concentration of food-borne pathogens in food samples prior to quantification by viablecell counting and real-time PCR, " Applied and Environmental Microbiology, vol. 73, no. 1, pp. 92-100, 2007. (Pubitemid 46079939)
12. N. Jothikumar and M. W. Griffiths, "Rapid detection of Escherichia coli O157:H7 with multiplex real-time PCR assays, " Applied and Environmental Microbiology, vol. 68, no. 6, pp. 3169-3171, 2002. (Pubitemid 34602051)
13. H. Fukushima and Y. Tsunomori, "Study of real-time PCR assays for rapid detection of food-borne pathogens, " Kansenshogaku Zasshi, vol. 79, no. 9, pp. 644-655, 2005.
14. E. M. Nielsen and M. T. Andersen, "Detection and characterization of verocytotoxin-producing Escherichia coli by automated 5- nuclease PCR assay, " Journal of ClinicalMicrobiology, vol. 41, no. 7, pp. 2884-2893, 2003. (Pubitemid 36842275)
15. M. Klotz, S. Opper, K. Heeg, and S. Zimmermann, "Detection of Staphylococcus aureus enterotoxins A to D by real-time fluorescence PCR assay, " Journal of Clinical Microbiology, vol. 41, no. 10, pp. 4683-4687, 2003. (Pubitemid 37259777)
16. J. Yatsuyanagi, S. Saito, H. Sato, Y. Miyajima, K.-I. Amano, and K. Enomoto, "Characterization of enteropathogenic and enteroaggregative Escherichia coli isolated from diarrheal outbreaks, " Journal of Clinical Microbiology, vol. 40, no. 1, pp. 294-297, 2002. (Pubitemid 34027644)
17. M. Nishibuchi, Y. Takeda, J. Tada, et al., "Methods to detect the thermostable direct hemolysin gene and a related hemolysin gene of Vibrio parahaemolyticus by PCR, " Nippon Rinsho, vol. 50, supplement, pp. 348-352, 1992 (Japanese).
18. N. Kato, S. M. Kim, H. Kato, et al., "Identification of enterotoxin-producing Clostridium perfringens by the polymerase chain reaction, " The Journal of the Japanese Association for Infectious Diseases, vol. 67, no. 8, pp. 724-729, 1993.
19. S. M. Franck, B. T. Bosworth, and H. W. Moon, "Multiplex PCR for enterotoxigenic, attaching and effacing, and Shiga toxin-producing Escherichia coli strains from calves, " Journal of Clinical Microbiology, vol. 36, no. 6, pp. 1795-1797, 1998. (Pubitemid 28226079)
20. E. Villalobo and A. Torres, "PCR for detection of Shigella spp. in mayonnaise, " Applied and Environmental Microbiology, vol. 64, no. 4, pp. 1242-1245, 1998. (Pubitemid 28188378)
21. G. Wang, C. G. Clark, C. Liu, et al., "Detection and characterization of the hemolysin genes in Aeromonas hydrophila and Aeromonas sobria by multiplex PCR, " Journal of Clinical Microbiology, vol. 41, no. 3, pp. 1048-1054, 2003. (Pubitemid 36307105)
22. F. Itoh, T. Ogino, K. Itoh, and H. Watanabe, "Differentiation and detection of pathogenic determinants among diarrheogenic Escherichia coli by polymerase chain reaction using mixed primers, " Nippon Rinsho, vol. 50, supplement, pp. 343-347, 1992 (Japanese).
23. I.-C. Yang, D. Y.-C. Shih, J.-Y. Wang, and T.-M. Pan, "Development of rapid real-time PCR and most-probable-number real-time PCR assays to quantify enterotoxigenic strains of the species in the Bacillus cereus group, " Journal of Food Protection, vol. 70, no. 12, pp. 2774-2781, 2007. (Pubitemid 350293357)
24. M. Skurnik and H. Wolf-Watz, "Analysis of the yopA gene encoding the Yop1 virulence determinants of Yersinia spp., " Molecular Microbiology, vol. 3, no. 4, pp. 517-529, 1989. (Pubitemid 19237672)
25. I. Gonzalez, K. A. Grant, P. T. Richardson, S. F. Park, and M. D. Collins, "Specific identification of the enteropathogens Campylobacter jejuni and Campylobacter coli by using a PCR test based on the ceuE gene encoding a putative virulence determinant, " Journal of Clinical Microbiology, vol. 35, no. 3, pp. 759-763, 1997. (Pubitemid 27083878)
26. J. P. Nataro, D. Yikang, D. Yingkang, and K. Walker, "AggR, a transcriptional activator of aggregative adherence fimbria I expression in enteroaggregative Escherichia coli, " Journal of Bacteriology, vol. 176, no. 15, pp. 4691-4699, 1994. (Pubitemid 24237974)
27. Y. Nishikawa, J. Ogasawara, A. Helander, and K. Haruki, "An outbreak of gastroenteritis in Japan due to Escherichia coli O166, " Emerging Infectious Diseases, vol. 5, no. 2, p. 300, 1999. (Pubitemid 29200634)
28. D. Bibbal, V. Dupouy, J. P. Ferré, et al., "Impact of three ampicillin dosage regimens on selection of ampicillin resistance in Enterobacteriaceae and excretion of blaTEM genes in swine feces, " Applied and EnvironmentalMicrobiology, vol. 73, no. 15, pp. 4785-4790, 2007. (Pubitemid 47237226)
29. C. J. Fu, J. N. Carter, Y. Li, J. H. Porter, and M. S. Kerley, "Comparison of agar plate and real-time PCR on enumeration of Lactobacillus, Clostridium perfringens and total anaerobic bacteria in dog faeces, " Letters in AppliedMicrobiology, vol. 42, no. 5, pp. 490-494, 2006.