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Volumn 10, Issue 9, 2011, Pages 4005-4017

Rapid verification of candidate serological biomarkers using gel-based, label-free multiple reaction monitoring

Author keywords

biomarker validation; biomarker verification; label free quantitation; multiple reaction monitoring (MRM); serum biomarkers; serum proteomes

Indexed keywords

BIOLOGICAL MARKER; PEPTIDE DERIVATIVE; STABLE ISOTOPE;

EID: 80052431797     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr2002098     Document Type: Article
Times cited : (35)

References (49)
  • 3
    • 78649858218 scopus 로고    scopus 로고
    • Advances in proximal fluid proteomics for disease biomarker discovery
    • Teng, P. N.; Bateman, N. W.; Hood, B. L.; Conrads, T. P. Advances in proximal fluid proteomics for disease biomarker discovery J. Proteome Res. 2010, 9 (12) 6091-100
    • (2010) J. Proteome Res. , vol.9 , Issue.12 , pp. 6091-100
    • Teng, P.N.1    Bateman, N.W.2    Hood, B.L.3    Conrads, T.P.4
  • 4
    • 77956403452 scopus 로고    scopus 로고
    • Proteomics of colorectal cancer: Overview of discovery studies and identification of commonly identified cancer-associated proteins and candidate CRC serum markers
    • Jimenez, C. R.; Knol, J. C.; Meijer, G. A.; Fijneman, R. J. Proteomics of colorectal cancer: overview of discovery studies and identification of commonly identified cancer-associated proteins and candidate CRC serum markers J. Proteomics 2010, 73 (10) 1873-95
    • (2010) J. Proteomics , vol.73 , Issue.10 , pp. 1873-95
    • Jimenez, C.R.1    Knol, J.C.2    Meijer, G.A.3    Fijneman, R.J.4
  • 5
    • 77957755656 scopus 로고    scopus 로고
    • Secretome proteomics for discovery of cancer biomarkers
    • Makridakis, M.; Vlahou, A. Secretome proteomics for discovery of cancer biomarkers J. Proteomics 2010, 73 (12) 2291-305
    • (2010) J. Proteomics , vol.73 , Issue.12 , pp. 2291-305
    • Makridakis, M.1    Vlahou, A.2
  • 6
    • 77956417496 scopus 로고    scopus 로고
    • Advances in proteomic prostate cancer biomarker discovery
    • Goo, Y. A.; Goodlett, D. R. Advances in proteomic prostate cancer biomarker discovery J. Proteomics 2010, 73 (10) 1839-50
    • (2010) J. Proteomics , vol.73 , Issue.10 , pp. 1839-50
    • Goo, Y.A.1    Goodlett, D.R.2
  • 7
    • 33747030845 scopus 로고    scopus 로고
    • Protein biomarker discovery and validation: The long and uncertain path to clinical utility
    • DOI 10.1038/nbt1235, PII NBT1235
    • Rifai, N.; Gillette, M. A.; Carr, S. A. Protein biomarker discovery and validation: the long and uncertain path to clinical utility Nat. Biotechnol. 2006, 24 (8) 971-83 (Pubitemid 44215392)
    • (2006) Nature Biotechnology , vol.24 , Issue.8 , pp. 971-983
    • Rifai, N.1    Gillette, M.A.2    Carr, S.A.3
  • 8
    • 14844311934 scopus 로고    scopus 로고
    • Candidate-based proteomics in the search for biomarkers of cardiovascular disease
    • Anderson, L. Candidate-based proteomics in the search for biomarkers of cardiovascular disease J. Physiol. 2005, 563 (Pt 1) 23-60
    • (2005) J. Physiol. , vol.563 , Issue.PART 1 , pp. 23-60
    • Anderson, L.1
  • 10
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • Anderson, L.; Hunter, C. L. Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins Mol. Cell. Proteomics 2006, 5 (4) 573-88
    • (2006) Mol. Cell. Proteomics , vol.5 , Issue.4 , pp. 573-88
    • Anderson, L.1    Hunter, C.L.2
  • 11
    • 77954523086 scopus 로고    scopus 로고
    • Options and considerations when selecting a quantitative proteomics strategy
    • Domon, B.; Aebersold, R. Options and considerations when selecting a quantitative proteomics strategy Nat. Biotechnol. 2010, 28 (7) 710-21
    • (2010) Nat. Biotechnol. , vol.28 , Issue.7 , pp. 710-21
    • Domon, B.1    Aebersold, R.2
  • 12
    • 35348863892 scopus 로고    scopus 로고
    • High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
    • DOI 10.1074/mcp.M700132-MCP200
    • Stahl-Zeng, J.; Lange, V.; Ossola, R.; Eckhardt, K.; Krek, W.; Aebersold, R.; Domon, B. High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites Mol. Cell. Proteomics 2007, 6 (10) 1809-17 (Pubitemid 350031682)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.10 , pp. 1809-1817
    • Stahl-Zeng, J.1    Lange, V.2    Ossola, R.3    Eckhardt, K.4    Krek, W.5    Aebersold, R.6    Domon, B.7
  • 13
    • 4444301306 scopus 로고    scopus 로고
    • Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-MS/MS using protein cleavage and isotope dilution mass spectrometry
    • DOI 10.1021/pr049963d
    • Barnidge, D. R.; Goodmanson, M. K.; Klee, G. G.; Muddiman, D. C. Absolute quantification of the model biomarker prostate-specific antigen in serum by LC-Ms/MS using protein cleavage and isotope dilution mass spectrometry J. Proteome Res. 2004, 3 (3) 644-52 (Pubitemid 39207371)
    • (2004) Journal of Proteome Research , vol.3 , Issue.3 , pp. 644-652
    • Barnidge, D.R.1    Goodmanson, M.K.2    Klee, G.G.3    Muddiman, D.C.4
  • 15
    • 0346668199 scopus 로고    scopus 로고
    • Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards
    • DOI 10.1021/ac026154+
    • Barnidge, D. R.; Dratz, E. A.; Martin, T.; Bonilla, L. E.; Moran, L. B.; Lindall, A. Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards Anal. Chem. 2003, 75 (3) 445-51 (Pubitemid 36176714)
    • (2003) Analytical Chemistry , vol.75 , Issue.3 , pp. 445-451
    • Barnidge, D.R.1    Dratz, E.A.2    Martin, T.3    Bonilla, L.E.4    Moran, L.B.5    Lindall, A.6
  • 17
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution
    • Keshishian, H.; Addona, T.; Burgess, M.; Kuhn, E.; Carr, S. A. Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution Mol. Cell. Proteomics 2007, 6 (12) 2212-29
    • (2007) Mol. Cell. Proteomics , vol.6 , Issue.12 , pp. 2212-29
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Kuhn, E.4    Carr, S.A.5
  • 18
    • 55349139657 scopus 로고    scopus 로고
    • Quantification of thyroglobulin, a low-abundance serum protein, by immunoaffinity peptide enrichment and tandem mass spectrometry
    • Hoofnagle, A. N.; Becker, J. O.; Wener, M. H.; Heinecke, J. W. Quantification of thyroglobulin, a low-abundance serum protein, by immunoaffinity peptide enrichment and tandem mass spectrometry Clin. Chem. 2008, 54 (11) 1796-804
    • (2008) Clin. Chem. , vol.54 , Issue.11 , pp. 1796-804
    • Hoofnagle, A.N.1    Becker, J.O.2    Wener, M.H.3    Heinecke, J.W.4
  • 22
    • 33847416604 scopus 로고    scopus 로고
    • A synthetic protein approach toward accurate mass spectrometric quantification of component stoichiometry of multiprotein complexes
    • DOI 10.1021/pr060447s
    • Kito, K.; Ota, K.; Fujita, T.; Ito, T. A synthetic protein approach toward accurate mass spectrometric quantification of component stoichiometry of multiprotein complexes J. Proteome Res. 2007, 6 (2) 792-800 (Pubitemid 46340182)
    • (2007) Journal of Proteome Research , vol.6 , Issue.2 , pp. 792-800
    • Kito, K.1    Ota, K.2    Fujita, T.3    Ito, T.4
  • 23
    • 33847179916 scopus 로고    scopus 로고
    • Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
    • Pratt, J. M.; Simpson, D. M.; Doherty, M. K.; Rivers, J.; Gaskell, S. J.; Beynon, R. J. Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes Nat. Protoc. 2006, 1 (2) 1029-43
    • (2006) Nat. Protoc. , vol.1 , Issue.2 , pp. 1029-43
    • Pratt, J.M.1    Simpson, D.M.2    Doherty, M.K.3    Rivers, J.4    Gaskell, S.J.5    Beynon, R.J.6
  • 24
    • 53049096977 scopus 로고    scopus 로고
    • Multiple reaction monitoring of mTRAQ-labeled peptides enables absolute quantification of endogenous levels of a potential cancer marker in cancerous and normal endometrial tissues
    • DeSouza, L. V.; Taylor, A. M.; Li, W.; Minkoff, M. S.; Romaschin, A. D.; Colgan, T. J.; Siu, K. W. Multiple reaction monitoring of mTRAQ-labeled peptides enables absolute quantification of endogenous levels of a potential cancer marker in cancerous and normal endometrial tissues J. Proteome Res. 2008, 7 (8) 3525-34
    • (2008) J. Proteome Res. , vol.7 , Issue.8 , pp. 3525-34
    • Desouza, L.V.1    Taylor, A.M.2    Li, W.3    Minkoff, M.S.4    Romaschin, A.D.5    Colgan, T.J.6    Siu, K.W.7
  • 25
    • 77954573328 scopus 로고    scopus 로고
    • Combination of improved (18)O incorporation and multiple reaction monitoring: A universal strategy for absolute quantitative verification of serum candidate biomarkers of liver cancer
    • Zhao, Y.; Jia, W.; Sun, W.; Jin, W.; Guo, L.; Wei, J.; Ying, W.; Zhang, Y.; Xie, Y.; Jiang, Y.; He, F.; Qian, X. Combination of improved (18)O incorporation and multiple reaction monitoring: a universal strategy for absolute quantitative verification of serum candidate biomarkers of liver cancer J. Proteome Res. 2010, 9 (6) 3319-27
    • (2010) J. Proteome Res. , vol.9 , Issue.6 , pp. 3319-27
    • Zhao, Y.1    Jia, W.2    Sun, W.3    Jin, W.4    Guo, L.5    Wei, J.6    Ying, W.7    Zhang, Y.8    Xie, Y.9    Jiang, Y.10    He, F.11    Qian, X.12
  • 26
    • 42649091860 scopus 로고    scopus 로고
    • Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics
    • DOI 10.1074/mcp.M700495-MCP200
    • Mirzaei, H.; McBee, J. K.; Watts, J.; Aebersold, R. Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics Mol. Cell. Proteomics 2008, 7 (4) 813-23 (Pubitemid 351597489)
    • (2008) Molecular and Cellular Proteomics , vol.7 , Issue.4 , pp. 813-823
    • Mirzaei, H.1    McBee, J.K.2    Watts, J.3    Aebersold, R.4
  • 27
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: History, character, and diagnostic prospects
    • Anderson, N. L.; Anderson, N. G. The human plasma proteome: history, character, and diagnostic prospects Mol. Cell. Proteomics 2002, 1 (11) 845-67
    • (2002) Mol. Cell. Proteomics , vol.1 , Issue.11 , pp. 845-67
    • Anderson, N.L.1    Anderson, N.G.2
  • 28
    • 63049090914 scopus 로고    scopus 로고
    • How specific is my SRM?: The issue of precursor and product ion redundancy
    • Sherman, J.; McKay, M. J.; Ashman, K.; Molloy, M. P. How specific is my SRM?: The issue of precursor and product ion redundancy Proteomics 2009, 9 (5) 1120-3
    • (2009) Proteomics , vol.9 , Issue.5 , pp. 1120-3
    • Sherman, J.1    McKay, M.J.2    Ashman, K.3    Molloy, M.P.4
  • 30
    • 77953167152 scopus 로고    scopus 로고
    • Revealing novel telomere proteins using in vivo cross-linking, tandem affinity purification, and label-free quantitative LC-FTICR-MS
    • Nittis, T.; Guittat, L.; LeDuc, R. D.; Dao, B.; Duxin, J. P.; Rohrs, H.; Townsend, R. R.; Stewart, S. A. Revealing novel telomere proteins using in vivo cross-linking, tandem affinity purification, and label-free quantitative LC-FTICR-MS Mol. Cell. Proteomics 2010, 9 (6) 1144-56
    • (2010) Mol. Cell. Proteomics , vol.9 , Issue.6 , pp. 1144-56
    • Nittis, T.1    Guittat, L.2    Leduc, R.D.3    Dao, B.4    Duxin, J.P.5    Rohrs, H.6    Townsend, R.R.7    Stewart, S.A.8
  • 32
    • 79955436583 scopus 로고    scopus 로고
    • Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome
    • Nagaraj, N.; Mann, M. Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome J. Proteome Res. 2011, 10 (2) 637-45
    • (2011) J. Proteome Res. , vol.10 , Issue.2 , pp. 637-45
    • Nagaraj, N.1    Mann, M.2
  • 33
    • 79952437118 scopus 로고    scopus 로고
    • Systematic discovery of ectopic pregnancy serum biomarkers using 3-D protein profiling coupled with label-free quantitation
    • Beer, L. A.; Tang, H. Y.; Sriswasdi, S.; Barnhart, K. T.; Speicher, D. W. Systematic discovery of ectopic pregnancy serum biomarkers using 3-D protein profiling coupled with label-free quantitation J. Proteome Res. 2011, 10 (3) 1126-38
    • (2011) J. Proteome Res. , vol.10 , Issue.3 , pp. 1126-38
    • Beer, L.A.1    Tang, H.Y.2    Sriswasdi, S.3    Barnhart, K.T.4    Speicher, D.W.5
  • 35
    • 77952851155 scopus 로고    scopus 로고
    • Targeted label-free quantitative analysis of secretory proteins from adipocytes in response to oxidative stress
    • Choi, S.; Kim, J.; Yea, K.; Suh, P. G.; Ryu, S. H. Targeted label-free quantitative analysis of secretory proteins from adipocytes in response to oxidative stress Anal. Biochem. 2010, 401 (2) 196-202
    • (2010) Anal. Biochem. , vol.401 , Issue.2 , pp. 196-202
    • Choi, S.1    Kim, J.2    Yea, K.3    Suh, P.G.4    Ryu, S.H.5
  • 36
    • 79960144245 scopus 로고    scopus 로고
    • In-depth analysis of a plasma or serum proteome using a 4D protein profiling method
    • Tang, H. Y.; Beer, L. A.; Speicher, D. W. In-depth analysis of a plasma or serum proteome using a 4D protein profiling method Methods Mol. Biol. 2011, 728, 47-67
    • (2011) Methods Mol. Biol. , vol.728 , pp. 47-67
    • Tang, H.Y.1    Beer, L.A.2    Speicher, D.W.3
  • 37
    • 78650066150 scopus 로고    scopus 로고
    • A systems biology analysis of metastatic melanoma using in-depth three-dimensional protein profiling
    • Han, M. J.; Wang, H.; Beer, L. A.; Tang, H. Y.; Herlyn, M.; Speicher, D. W. A systems biology analysis of metastatic melanoma using in-depth three-dimensional protein profiling Proteomics 2010, 10 (24) 4450-62
    • (2010) Proteomics , vol.10 , Issue.24 , pp. 4450-62
    • Han, M.J.1    Wang, H.2    Beer, L.A.3    Tang, H.Y.4    Herlyn, M.5    Speicher, D.W.6
  • 38
    • 75749130354 scopus 로고    scopus 로고
    • The clinical plasma proteome: A survey of clinical assays for proteins in plasma and serum
    • Anderson, N. L. The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum Clin. Chem. 2010, 56 (2) 177-85
    • (2010) Clin. Chem. , vol.56 , Issue.2 , pp. 177-85
    • Anderson, N.L.1
  • 40
    • 18844400905 scopus 로고    scopus 로고
    • Peroxiredoxin 6, a 1-Cys peroxiredoxin, functions in antioxidant defense and lung phospholipid metabolism
    • DOI 10.1016/j.freeradbiomed.2005.02.011, PII S0891584905000821
    • Manevich, Y.; Fisher, A. B. Peroxiredoxin 6, a 1-Cys peroxiredoxin, functions in antioxidant defense and lung phospholipid metabolism Free Radical Biol. Med. 2005, 38 (11) 1422-32 (Pubitemid 40693827)
    • (2005) Free Radical Biology and Medicine , vol.38 , Issue.11 , pp. 1422-1432
    • Manevich, Y.1    Fisher, A.B.2
  • 41
    • 76649112729 scopus 로고    scopus 로고
    • Peroxiredoxin 6 promotes lung cancer cell invasion by inducing urokinase-type plasminogen activator via p38 kinase, phosphoinositide 3-kinase, and Akt
    • Lee, S. B.; Ho, J. N.; Yoon, S. H.; Kang, G. Y.; Hwang, S. G.; Um, H. D. Peroxiredoxin 6 promotes lung cancer cell invasion by inducing urokinase-type plasminogen activator via p38 kinase, phosphoinositide 3-kinase, and Akt Mol. Cells 2009, 28 (6) 583-8
    • (2009) Mol. Cells , vol.28 , Issue.6 , pp. 583-8
    • Lee, S.B.1    Ho, J.N.2    Yoon, S.H.3    Kang, G.Y.4    Hwang, S.G.5    Um, H.D.6
  • 42
    • 77950828060 scopus 로고    scopus 로고
    • Phospholipase A2 activity of peroxiredoxin 6 promotes invasion and metastasis of lung cancer cells
    • Ho, J. N.; Lee, S. B.; Lee, S. S.; Yoon, S. H.; Kang, G. Y.; Hwang, S. G.; Um, H. D. Phospholipase A2 activity of peroxiredoxin 6 promotes invasion and metastasis of lung cancer cells Mol. Cancer Ther. 2010, 9 (4) 825-32
    • (2010) Mol. Cancer Ther. , vol.9 , Issue.4 , pp. 825-32
    • Ho, J.N.1    Lee, S.B.2    Lee, S.S.3    Yoon, S.H.4    Kang, G.Y.5    Hwang, S.G.6    Um, H.D.7
  • 43
    • 50649106648 scopus 로고    scopus 로고
    • Cathepsin D - Many functions of one aspartic protease
    • Benes, P.; Vetvicka, V.; Fusek, M. Cathepsin D - many functions of one aspartic protease Crit. Rev. Oncol. Hematol. 2008, 68 (1) 12-28
    • (2008) Crit. Rev. Oncol. Hematol. , vol.68 , Issue.1 , pp. 12-28
    • Benes, P.1    Vetvicka, V.2    Fusek, M.3
  • 44
    • 0020578295 scopus 로고
    • Molecular forms of β-hexosaminidase and cathepsin D in serum and urine of healthy subjects and patients with elevated activity of lysosomal enzymes
    • Zuhlsdorf, M.; Imort, M.; Hasilik, A.; von Figura, K. Molecular forms of beta-hexosaminidase and cathepsin D in serum and urine of healthy subjects and patients with elevated activity of lysosomal enzymes Biochem. J. 1983, 213 (3) 733-40 (Pubitemid 13044143)
    • (1983) Biochemical Journal , vol.213 , Issue.3 , pp. 733-740
    • Zuhlsdorf, M.1    Imort, M.2    Hasilik, A.3    Von Figura, K.4
  • 45
    • 2942711855 scopus 로고    scopus 로고
    • Cathepsin D expression levels in nongynecological solid tumors: Clinical and therapeutic implications
    • DOI 10.1023/B:CLIN.0000024740.44602.b7
    • Leto, G.; Tumminello, F. M.; Crescimanno, M.; Flandina, C.; Gebbia, N. Cathepsin D expression levels in nongynecological solid tumors: clinical and therapeutic implications Clin. Exp. Metastasis 2004, 21 (2) 91-106 (Pubitemid 38988083)
    • (2004) Clinical and Experimental Metastasis , vol.21 , Issue.2 , pp. 91-106
    • Leto, G.1    Tumminello, F.M.2    Crescimanno, M.3    Flandina, C.4    Gebbia, N.5
  • 46
    • 0030978333 scopus 로고    scopus 로고
    • Increased cathepsin D level in the serum of patients with metastatic breast carcinoma detected with a specific pro-cathepsin D immunoassay
    • DOI 10.1002/(SICI)10 97-0142(199706 01)79:11<2132::AID-CN CR10>3.0.CO;2-X
    • Brouillet, J. P.; Dufour, F.; Lemamy, G.; Garcia, M.; Schlup, N.; Grenier, J.; Mani, J. C.; Rochefort, H. Increased cathepsin D level in the serum of patients with metastatic breast carcinoma detected with a specific pro-cathepsin D immunoassay Cancer 1997, 79 (11) 2132-6 (Pubitemid 27227377)
    • (1997) Cancer , vol.79 , Issue.11 , pp. 2132-2136
    • Brouillet, J.-P.1    Dufour, F.2    Lemamy, G.3    Garcia, M.4    Schlup, N.5    Grenier, J.6    Mani, J.-C.7    Rochefort, H.8


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