메뉴 건너뛰기




Volumn 6, Issue 9, 2011, Pages

The choice of the filtering method in microarrays affects the inference regarding dosage compensation of the active X-chromosome

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; AUTOSOME; BIOLOGICAL ACTIVITY; CHROMOSOMAL LOCALIZATION; CHROMOSOME ISOLATION; CONTROLLED STUDY; DNA MICROARRAY; EXPERIMENTAL MODEL; FEMALE; GENE ACTIVATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HUMAN; INTERMETHOD COMPARISON; LIMIT OF DETECTION; MALE; MONOCYTE; RNA SEQUENCE; X CHROMOSOME; ANIMAL; BIOLOGICAL MODEL; CELL STRAIN HEK293; GENETICS; GENOME IMPRINTING; METABOLISM; METHODOLOGY; MOUSE; X CHROMOSOMAL INHERITANCE;

EID: 80052383183     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023956     Document Type: Article
Times cited : (20)

References (17)
  • 1
    • 58549109636 scopus 로고    scopus 로고
    • X chromosome dosage compensation: how mammals keep the balance
    • doi:10.1146/annurev.genet.42.110807.091711
    • Payer B, Lee JT, (2008) X chromosome dosage compensation: how mammals keep the balance. Annu Rev Genet 42: 733-772 doi:10.1146/annurev.genet.42.110807.091711.
    • (2008) Annu Rev Genet , vol.42 , pp. 733-772
    • Payer, B.1    Lee, J.T.2
  • 3
    • 33847020017 scopus 로고    scopus 로고
    • Global analysis of X-chromosome dosage compensation
    • doi:10.1186/jbiol30
    • Gupta V, Parisi M, Sturgill D, Nuttall R, Doctolero M, et al. (2006) Global analysis of X-chromosome dosage compensation. J Biol 5: 1-22 doi:10.1186/jbiol30.
    • (2006) J Biol , vol.5 , pp. 1-22
    • Gupta, V.1    Parisi, M.2    Sturgill, D.3    Nuttall, R.4    Doctolero, M.5
  • 4
    • 29444455049 scopus 로고    scopus 로고
    • Dosage compensation of the active X chromosome in mammals
    • doi:10.1038/ng1705
    • Nguyen DK, Disteche CM, (2006) Dosage compensation of the active X chromosome in mammals. Nat Genet 38: 47-53 doi:10.1038/ng1705.
    • (2006) Nat Genet , vol.38 , pp. 47-53
    • Nguyen, D.K.1    Disteche, C.M.2
  • 5
    • 38949090440 scopus 로고    scopus 로고
    • Large-scale population study of human cell lines indicates that dosage compensation is virtually complete
    • doi:10.1371/journal.pgen.0040009
    • Johnston CM, Lovell FL, Leongamornlert DA, Stranger BE, Dermitzakis ET, et al. (2008) Large-scale population study of human cell lines indicates that dosage compensation is virtually complete. PLoS Genet 4: e9 doi:10.1371/journal.pgen.0040009.
    • (2008) PLoS Genet , vol.4
    • Johnston, C.M.1    Lovell, F.L.2    Leongamornlert, D.A.3    Stranger, B.E.4    Dermitzakis, E.T.5
  • 6
    • 70349975009 scopus 로고    scopus 로고
    • Progress and prospects toward our understanding of the evolution of dosage compensation
    • doi:10.1007/s10577-009-9053-y
    • Vicoso B, Bachtrog D, (2009) Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Res 17: 585-602 doi:10.1007/s10577-009-9053-y.
    • (2009) Chromosome Res , vol.17 , pp. 585-602
    • Vicoso, B.1    Bachtrog, D.2
  • 7
    • 79960106363 scopus 로고    scopus 로고
    • Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite
    • doi:10.1093/gbe/evr010
    • Vicoso B, Bachtrog D, (2011) Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biol Evol 3: 230-235 doi:10.1093/gbe/evr010.
    • (2011) Genome Biol Evol , vol.3 , pp. 230-235
    • Vicoso, B.1    Bachtrog, D.2
  • 8
    • 80052353175 scopus 로고    scopus 로고
    • Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori
    • doi:10.1093/gbe/evr036
    • Walters JR, Hardcastle TJ, (2011) Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori. Genome Biol Evol 3: 491-504 doi:10.1093/gbe/evr036.
    • (2011) Genome Biol Evol , vol.3 , pp. 491-504
    • Walters, J.R.1    Hardcastle, T.J.2
  • 9
    • 78649458548 scopus 로고    scopus 로고
    • RNA sequencing shows no dosage compensation of the active X-chromosome
    • doi:10.1038/ng.711
    • Xiong Y, Chen X, Chen Z, Wang X, Shi S, et al. (2010) RNA sequencing shows no dosage compensation of the active X-chromosome. Nat Genet 42: 1043-1047 doi:10.1038/ng.711.
    • (2010) Nat Genet , vol.42 , pp. 1043-1047
    • Xiong, Y.1    Chen, X.2    Chen, Z.3    Wang, X.4    Shi, S.5
  • 10
    • 47649124124 scopus 로고    scopus 로고
    • A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
    • doi:10.1126/science.1160342
    • Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, et al. (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321: 956-960 doi:10.1126/science.1160342.
    • (2008) Science , vol.321 , pp. 956-960
    • Sultan, M.1    Schulz, M.H.2    Richard, H.3    Magen, A.4    Klingenhoff, A.5
  • 11
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • doi:10.1101/gr.079558.108
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18: 1509-1517 doi:10.1101/gr.079558.108.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 12
    • 77956637896 scopus 로고    scopus 로고
    • Genetics and beyond-the transcriptome of human monocytes and disease susceptibility
    • doi:10.1371/journal.pone.0010693
    • Zeller T, Wild P, Szymczak S, Rotival M, Schillert A, et al. (2010) Genetics and beyond-the transcriptome of human monocytes and disease susceptibility. PLoS ONE 5: e10693 doi:10.1371/journal.pone.0010693.
    • (2010) PLoS ONE , vol.5
    • Zeller, T.1    Wild, P.2    Szymczak, S.3    Rotival, M.4    Schillert, A.5
  • 13
    • 79958724665 scopus 로고    scopus 로고
    • RNA sequencing reveals two major classes of gene expression levels in metazoan cells
    • doi:10.1038/msb.2011.28
    • Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, et al. (2011) RNA sequencing reveals two major classes of gene expression levels in metazoan cells. Mol Syst Biol 7: 497 doi:10.1038/msb.2011.28.
    • (2011) Mol Syst Biol , vol.7 , pp. 497
    • Hebenstreit, D.1    Fang, M.2    Gu, M.3    Charoensawan, V.4    van Oudenaarden, A.5
  • 14
    • 79952659846 scopus 로고    scopus 로고
    • Boosting Signal-to-Noise in Complex Biology: Prior Knowledge Is Power
    • doi:10.1016/j.cell.2011.03.007
    • Ideker T, Dutkowski J, Hood L, (2011) Boosting Signal-to-Noise in Complex Biology: Prior Knowledge Is Power. Cell 144: 860-863 doi:10.1016/j.cell.2011.03.007.
    • (2011) Cell , vol.144 , pp. 860-863
    • Ideker, T.1    Dutkowski, J.2    Hood, L.3
  • 15
    • 77951221352 scopus 로고    scopus 로고
    • A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data
    • doi:10.1093/nar/gkp942
    • Barbosa-Morais NL, Dunning MJ, Samarajiwa SA, Darot JFJ, Ritchie ME, et al. (2010) A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Res 38: e17 doi:10.1093/nar/gkp942.
    • (2010) Nucleic Acids Res , vol.38
    • Barbosa-Morais, N.L.1    Dunning, M.J.2    Samarajiwa, S.A.3    Darot, J.F.J.4    Ritchie, M.E.5
  • 16
    • 39149111937 scopus 로고    scopus 로고
    • Model-based variance-stabilizing transformation for Illumina microarray data
    • doi:10.1093/nar/gkm1075
    • Lin SM, Du P, Huber W, Kibbe WA, (2008) Model-based variance-stabilizing transformation for Illumina microarray data. Nucleic Acids Res 36: e11 doi:10.1093/nar/gkm1075.
    • (2008) Nucleic Acids Res , vol.36
    • Lin, S.M.1    Du, P.2    Huber, W.3    Kibbe, W.A.4
  • 17
    • 46249088370 scopus 로고    scopus 로고
    • Lumi: a pipeline for processing Illumina microarray
    • doi:10.1093/bioinformatics/btn224
    • Du P, Kibbe WA, Lin SM, (2008) lumi: a pipeline for processing Illumina microarray. Bioinformatics 24: 1547-1548 doi:10.1093/bioinformatics/btn224.
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.