Hydrocarbon degradation, plant colonization and gene expression of alkane degradation genes by endophytic Enterobacter ludwigii strains

Environmental Pollution

Volumn 159, Issue 10, 2011, Pages 2675-2683

  Yousaf, Sohail ^a   Afzal, Muhammad ^a,b   Reichenauer, Thomas G ^a   Brady, Carrie L ^c   Sessitsch, Angela ^a  

^a AIT AUSTRIAN INSTITUTE OF TECHNOLOGY   (Austria)

^b NATIONAL INSTITUTE FOR BIOTECHNOLOGY AND GENETIC ENGINEERING NIBGE   (Pakistan)

^c UNIVERSITY OF PRETORIA   (South Africa)

Author keywords

Endophytes; Enterobacter ludwigii; Gene abundance; Gene expression; Hydrocarbon degradation

Indexed keywords

BIRDSFOOT TREFOIL; DEGRADATION RATE; ENDOPHYTES; ENTEROBACTER; HUMAN PATHOGENS; HYDROCARBON DEGRADATION; ITALIAN RYEGRASS; PLANT COLONIZATION; PLANT GROWTH PROMOTION; PLANT SPECIES; STERILE SOIL;

DEGRADATION; DIESEL FUELS; ORGANIC COMPOUNDS; PARAFFINS; SOILS;

GENE EXPRESSION;

DIESEL FUEL;

BACTERIUM; COLONIZATION; DEGRADATION; ENDOPHYTE; GENE EXPRESSION; HYDROCARBON; PATHOGEN; RHIZOSPHERE;

ALFALFA; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GENE; BACTERIAL STRAIN; BIOREMEDIATION; BIRDSFOOT TREFOIL; CONTROLLED STUDY; CYP153 GENE; ENTEROBACTER; ENTEROBACTER LUDWIGII; GENE EXPRESSION; GRASS; HYDROCARBON DEGRADATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; PLANT MORPHOLOGY; POPULATION ABUNDANCE; RHIZOSPHERE; SOIL POLLUTION;

ALKANES; BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; CYTOCHROME P-450 ENZYME SYSTEM; ENTEROBACTER; GENE EXPRESSION; HYDROCARBONS; MOLECULAR SEQUENCE DATA; PLANTS; SOIL MICROBIOLOGY;

ENTEROBACTER; ENTEROBACTER CLOACAE COMPLEX; ENTEROBACTER LUDWIGII; LOLIUM MULTIFLORUM; LOTUS CORNICULATUS; MEDICAGO SATIVA;

EID: 80052335632     PISSN: 02697491     EISSN: 18736424     Source Type: Journal    
DOI: 10.1016/j.envpol.2011.05.031     Document Type: Article

References (50)

1. M. Afzal, S. Yousaf, T.G. Reichenauer, M. Kuffner, and A. Sessitsch Soil type affects plant colonization, activity and catabolic gene expression of inoculated bacterial strains during phytoremediation of diesel Journal of Hazardous Materials 186 2011 1568 1575
2. K. Alef Biologische Bodensanierung: Methodenbuch 1994 Wiley VCH Verlag GmbH
3. V. Andria, T.G. Reichenauer, and A. Sessitsch Expression of alkane monooxygenase (alkB) genes by plant-associated bacteria in the rhizosphere and endosphere of Italian ryegrass (Lolium multiflorum L.) grown in diesel contaminated soil Environmental Pollution 157 2009 3347 3350
4. C. Brady, I. Cleenwerck, S. Venter, M. Vancanneyt, J. Swings, and T. Coutinho Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA) Systematic and Applied Microbiology 31 2008 447 460
5. H. Bürgmann, S. Meier, M. Bunge, F. Widmer, and J. Zeyer Effects of model root exudates on structure and activity of a soil diazotroph community Environmental Microbiology 7 2005 1711 1724 (Pubitemid 41532381)
6. T. Coenye, E. Falsen, M. Vancanneyt, B. Hoste, J. Govan, K. Kersters, and P. Vandamme Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov International Journal of Systematic and Evolutionary Microbiology 49 1999 405 413
7. B.R. Glick Phytoremediation: synergistic use of plants and bacteria to clean up the environment Biotechnology Advances 21 2003 383 393 (Pubitemid 36821267)
8. S. Guindon, and O. Gascuel A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Systematic Biology 52 2003 696 704 (Pubitemid 37365050)
9. J. Gurska, W. Wang, K.E. Gerhardt, A.M. Khalid, D.M. Isherwood, X.D. Huang, B.R. Glick, and B.M. Greenberg Three year field test of a plant growth promoting rhizobacteria enhanced phytoremediation system at a land farm for treatment of hydrocarbon waste Environmental Science and Technology 43 2009 4472 4479
10. P. Gyaneshwar, E. James, N. Mathan, P. Reddy, B. Reinhold-Hurek, and J. Ladha Endophytic colonization of rice by a diazotrophic strain of Serratia marcescens Journal of Bacteriology 183 2001 2634 2645 (Pubitemid 32249773)
11. B. Hai, N. Diallo, S. Sall, F. Haesler, K. Schauss, M. Bonzi, K. Assigbetse, J. Chotte, J. Munch, and M. Schloter Quantification of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems Applied and Environmental Microbiology 75 2009 4993 5000
12. H. Hoffmann, S. Stindl, W. Ludwig, A. Stumpf, A. Mehlen, J. Heesemann, D. Monget, K. Schleifer, and A. Roggenkamp Reassignment of Enterobacter dissolvens to Enterobacter cloacae as E. cloacae subspecies dissolvens comb. nov. and emended description of Enterobacter asburiae and Enterobacter kobei Systematic and Applied Microbiology 28 2005 196 205 (Pubitemid 40461696)
13. N. Holden, L. Pritchard, and I. Toth Colonization outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria FEMS Microbiology Reviews 33 2009 689 703
14. F.S. Hou, M.W. Milke, D.W. Leung, and D.J. MacPherson Variations in phytoremediation performance with diesel-contaminated soil Environmental Technology 22 2001 215 222
15. J. Juhanson, J. Truu, E. Heinaru, and A. Heinaru Temporal dynamics of microbial community in soil during phytoremediation field experiment Journal of Environmental Engineering and Landscape Management 15 2007 213 220
16. J. Juhanson, J. Truu, E. Heinaru, and A. Heinaru Survival and catabolic performance of introduced Pseudomonas strains during phytoremediation and bioaugmentation field experiment FEMS Microbiology Ecology 70 2009 446 455
17. E. Kaimi, T. Mukaidani, and M. Tamaki Screening of twelve plant species for phytoremediation of petroleum hydrocarbon-contaminated soil Plant Production Science 10 2007 211 218 (Pubitemid 46698574)
18. P. Kämpfer, S. Ruppel, and R. Remus Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae Systematic and Applied Microbiology 28 2005 213 221 (Pubitemid 40461698)
19. C. Kechavarzi, K. Pettersson, P. Leeds-Harrison, L. Ritchie, and S. Ledin Root establishment of perennial ryegrass (L. perenne) in diesel contaminated subsurface soil layers Environmental Pollution 145 2007 68 74 (Pubitemid 44573564)
20. J.L. Kirk, J.N. Klironomos, H. Lee, and J.T. Trevors The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil Environmental Pollution 133 2005 455 465 (Pubitemid 39440593)
21. M. Kuffner, M. Puschenreiter, G. Wieshammer, M. Gorfer, and A. Sessitsch Rhizosphere bacteria affect growth and metal uptake of heavy metal accumulating willows Plant and Soil 304 2008 35 44
22. 2-fixing methylotrophic isolates Biology and Fertility of Soils 42 2006 402 408 (Pubitemid 44034924)
23. D. Lelie, J. Schwitzguébel, D. Glass, J. Vangronsveld, and A. Baker Peer reviewed: assessing phytoremediation's progress in the United States and Europe Environmental Science and Technology 35 2001 446 452
24. H. Liste, and I. Prutz Plant performance, dioxygenase-expressing rhizosphere bacteria, and biodegradation of weathered hydrocarbons in contaminated soil Chemosphere 62 2006 1411 1420 (Pubitemid 43255282)
25. L. Liu, C. Jiang, X. Liu, J. Wu, J. Han, and S. Liu Plant-microbe association for rhizoremediation of chloronitroaromatic pollutants with Comamonas sp. strain CNB 1 Environmental Microbiology 9 2007 465 473 (Pubitemid 46072132)
26. C. Lodewyckx, J. Vangronsveld, F. Porteous, E. Moore, S. Taghavi, M. Mezgeay, and D. van der Lelie Endophytic bacteria and their potential applications Critical Reviews in Plant Sciences 21 2002 583 606 (Pubitemid 35426671)
27. M. Madhaiyan, S. Poonguzhali, J. Lee, V. Saravanan, K. Lee, and P. Santhanakrishnan Enterobacter arachidis sp. nov., a plant growth-promoting diazotrophic bacterium isolated from rhizosphere soil of groundnut International Journal of Systematic and Evolutionary Microbiology 60 2010 1559 1564
28. A. Muratova, T. Dmitrieva, L. Panchenko, and O. Turkovskaya Phytoremediation of oil-sludge-contaminated soil International Journal of Phytoremediation 10 2008 486 502
29. P. Olson, K. Reardon, and E. Pilon-Smits Ecology of rhizosphere bioremediation Phytoremediation: Transformation and Control of Contaminants 2003 317 353
30. A. Paauw, M. Caspers, F. Schuren, M. Leverstein-van Hall, A. Delétoile, R. Montijn, J. Verhoef, and A. Fluit Genomic diversity within the Enterobacter cloacae complex PLoS One 3 2008 3018 3028
31. M.R. Palmroth, J. Pichtel, and J.A. Puhakka Phytoremediation of subarctic soil contaminated with diesel fuel Bioresource Technology 84 2002 221 228 (Pubitemid 34553436)
32. G. Peng, W. Zhang, H. Luo, H. Xie, W. Lai, and Z. Tan Enterobacter oryzae sp. nov., a nitrogen-fixing bacterium isolated from the wild rice species Oryza latifolia International Journal of Systematic and Evolutionary Microbiology 59 2009 1650 1655
33. D. Posada, and K. Crandall MODELTEST: testing the model of DNA substitution Bioinformatics 14 1998 817 818 (Pubitemid 28552116)
34. S.M. Powell, S.H. Ferguson, J.P. Bowman, and I. Snape Using real-time PCR to assess changes in the hydrocarbon-degrading microbial community in Antarctic soil during bioremediation Microbial Ecology 52 2006 523 532 (Pubitemid 44899545)
35. F. Rasche, H. Velvis, C. Zachow, G. Berg, J. Van Elsas, and A. Sessitsch Impact of transgenic potatoes expressing anti bacterial agents on bacterial endophytes is comparable with the effects of plant genotype, soil type and pathogen infection Journal of Applied Ecology 43 2006 555 566 (Pubitemid 43739128)
36. F. Rasche, V. Hodl, C. Poll, E. Kandeler, M.H. Gerzabek, J.D. van Elsas, and A. Sessitsch Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild type potatoes, vegetation stage and pathogen exposure FEMS Microbiology Ecology 56 2006 219 235
37. B. Reiter, N. Wermbter, S. Gyamfi, H. Schwab, and A. Sessitsch Endophytic Pseudomonas spp. populations of pathogen-infected potato plants analysed by 16S rDNA- and 16S rRNA-based denaturating gradient gel electrophoresis Plant and Soil 257 2003 397 405 (Pubitemid 37514772)
38. M. Rosenblueth, and E. Martinez-Romero Bacterial endophytes and their interactions with hosts Molecular Plant-Microbe Interactions 19 2006 827 837 (Pubitemid 44098615)
39. X. Sheng, X. Chen, and L. He Characteristics of an endophytic pyrene-degrading bacterium of Enterobacter sp. 12J1 from Allium macrostemon Bunge International Biodeterioration and Biodegradation 62 2008 88 95
40. M. Shoebitz, C. Ribaudo, M. Pardo, M. Cantore, L. Ciampi, and J. Curá Plant growth promoting properties of a strain of Enterobacter ludwigii isolated from Lolium perenne rhizosphere Soil Biology and Biochemistry 41 2009 1768 1774
41. S.D. Siciliano, N. Fortin, A. Mihoc, G. Wisse, S. Labelle, D. Beaumier, D. Ouellette, R. Roy, L.G. Whyte, M.K. Banks, P. Schwab, K. Lee, and C.W. Greer Selection of specific endophytic bacterial genotypes by plants in response to soil contamination Applied and Environmental Microbiology 67 2001 2469 2475 (Pubitemid 33639715)
42. J. Stroud, G. Paton, and K. Semple Microbe aliphatic hydrocarbon interactions in soil: implications for biodegradation and bioremediation Journal of Applied Microbiology 102 2007 1239 1253 (Pubitemid 46633437)
43. D.L. Swofford PAUP*: Phylogenetic Analysis Using Parsimony and Other Methods (software) 2000 Sinauer Associates Sunderland, MA
44. S. Taghavi, C. Garafola, S. Monchy, L. Newman, A. Hoffman, N. Weyens, T. Barac, J. Vangronsveld, and D. Van Der Lelie Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees Applied and Environmental Microbiology 75 2009 748
45. J. Thompson, T. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Research 25 1997 4876 4882
46. J. Truu, E. Heinaru, E. Vedler, J. Juhanson, M. Viirmäe, and A. Heinaru Formation of microbial communities in oil shale chemical industry solid wastes during phytoremediation and bioaugmentation Bioremediation of Soils Contaminated with Aromatic Compounds 76 2007 57 66
47. J.B. van Beilen, E.G. Funfhoff, A. van Loon, A. Just, L. Kaysser, M. Bouza, R. Holtackers, M. Röthlisberger, Z. Li, and B. Witholt Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases Applied and Environmental Microbiology 72 2006 59 65
48. N. Weyens, D. van der Lelie, S. Taghavi, L. Newman, and J. Vangronsveld Exploiting plant-microbe partnerships to improve biomass production and remediation Trends in Biotechnology 27 2009 591 598
49. S. Yousaf, K. Ripka, T. Reichenauer, V. Andria, M. Afzal, and A. Sessitsch Hydrocarbon degradation and plant colonization by selected bacterial strains isolated from Italian ryegrass and birdsfoot trefoil Journal of Applied Microbiology 109 2010 1389 1401
50. S. Yousaf, V. Andria, T. Reichenauer, K. Smalla, and A. Sessitsch Phylogenetic and functional diversity of alkane degrading bacteria associated with Italian ryegrass (Lolium multiflorum) and birdsfoot trefoil (Lotus corniculatus) in a petroleum oil-contaminated environment Journal of Hazardous Materials 184 2010 523 532