Towards food, feed and energy crops mitigating climate change

Trends in Plant Science

Volumn 16, Issue 9, 2011, Pages 476-480

  Philippot, Laurent ^a,b   Hallin, Sara ^c  

^a CEMAGREF   (France)

^b UNIVERSITÉ DE BOURGOGNE   (France)

^c SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

METHANE; NITROUS OXIDE;

BACTERIUM; CARBON CYCLE; CHEMISTRY; CLIMATE CHANGE; CROP; ENVIRONMENTAL PROTECTION; GROWTH, DEVELOPMENT AND AGING; METABOLISM; METHODOLOGY; MICROBIOLOGY; NITROGEN CYCLE; PLANT EXUDATE; REVIEW; RHIZOSPHERE; SOIL; WETLAND;

BACTERIA; CARBON CYCLE; CLIMATE CHANGE; CONSERVATION OF NATURAL RESOURCES; CROPS, AGRICULTURAL; METHANE; NITROGEN CYCLE; NITROUS OXIDE; PLANT EXUDATES; RHIZOSPHERE; SOIL; SOIL MICROBIOLOGY; WETLANDS;

EID: 80052319680     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2011.05.007     Document Type: Review

References (54)

1. Forster P., et al. Changes in atmospheric constituents and in radiative forcing. Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change 2007, 131-234. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA. S. Solomon (Ed.).
2. Ravishankara A.R., et al. Nitrous oxide (N2O): the dominant ozone-depleting substance emitted in the 21st century. Science 2009, 326:123-125.
3. Smith P., et al. Agriculture. Climate Change 2007: Mitigation. Contribution of Working Group III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change 2007, 499-540. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA. B. Metz (Ed.).
4. Canfield D.E., et al. The evolution and future of Earth's nitrogen cycle. Science 2010, 330:192-196.
5. Rockström J., et al. A safe operating space for humanity. Nature 2009, 461:472-475.
6. Giles J. Fallout of fertilizers set too low, studies warn. Nature 2005, 434:262-1262.
7. IPCC Guidelines for national greenhouse gas inventories 2006, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA. H. Eggleston (Ed.).
8. Conrad R. Microbial ecology of methanogens and methanotrophs. Adv. Agronomy 2007, 96:1-63.
9. Lu Y., Conrad R. In situ stable isotope probing of methanogenic Archaea in the rice rhizosphere. Science 2005, 309:1088-1090.
10. Bodelier P., Laanbroek H. Nitrogen as a regulatory factor of methane oxidation in soils and sediments. FEMS Microbiol. Ecol. 2004, 47:265-277.
11. Conrad R. Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO). Microbiol. Rev. 1996, 60:609-640.
12. Firestone M.K., et al. Nitrous oxide from soil denitrification: factors controlling its biological production. Science 1980, 208:749-751.
13. Kowalchuk G.A., Stephen J.R. Ammonia-oxidizing bacteria: a model for molecular biology. Annu. Rev. Microbiol. 2001, 55:485-529.
14. Könneke M., et al. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 2005, 437:543-546.
15. Kool D.M., et al. Nitrifier denitrification as a distinct and significant source of nitrous oxide from soil. Soil Biol. Biochem. 2011, 43:174-178.
16. Webster G., Hopkins D.W. Contributions from different microbial processes to N20 emissions from soil under different moisture regimes. Biol. Fertil. Soils 1996, 22:331-335.
17. Wrage N., et al. A novel dual-isotope labelling method for distinguishing between soil sources of N2O. Rapid Com. Mass Spectro. 2005, 19:3298-3306.
18. Chapuis-Lardy L., et al. Soils, a sink for N2O?. a review. Global Change Biol. 2007, 13:1-17.
19. Zumft W.G. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 1997, 61:533-536.
20. Philippot L., et al. Ecology of denitrifying prokaryotes in agricultural soil. Adv. Agronomy 2007, 96:135-190.
21. Lynch J.M. The Rhizosphere 1990, John Wiley.
22. Sørensen J. The rhizosphere as a habitat for soil microorganisms. Modern Soil Microbiology 1997, 21-45. Marcel Dekker, New York. J.D. VanElsas (Ed.).
23. Dessaux Y., et al. Rhizosphere: Achievements and Challenges 2009, Springer.
24. Philippot L., et al. Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil 2009, 321:61-81.
25. Watanabe A., et al. Evaluation of origins of CH4 carbon emitted from rice paddies. J. Geophys. Res.-Atmos. 1999, 104:23623-23629.
26. ButterbachBahl K., et al. Impact of gas transport through rice cultivars on methane emission from rice paddy fields. Plant Cell Environ. 1997, 20:1175-1183.
27. Enwall K., et al. Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil. Soil Biol. Biochem. 2007, 39:106-115.
28. Lata J.C., et al. Relationships between root density of the African grass Hyparrhenia diplandra and nitrification at the decimetric scale: an inhibition-stimulation balance hypothesis. Proc. R. Soc. Lond. Ser. B: Biol. Sci. 2000, 276:1-6.
29. Lata J.C., et al. Grass population control nitrification in savanna soils. Funct. Ecol. 2004, 18:605-611.
30. Ruiz-Rueda O., et al. Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland. FEMS Microbiol. Ecol. 2008, 67:308-319.
31. Subbarao G.V., et al. A bioluminescence assay to detect nitrification inhibitors released from plant roots: a case study with Brachiaria humidicola. Plant Soil 2006, 288:101-112.
32. Subbarao G.V., et al. Evidence for biological nitrification inhibition in Brachiaria pastures. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:17302-17307.
33. Arth I., et al. Denitrification coupled to nitrification in the rhizosphere of rice. Soil Biol. Biochem. 1998, 4:509-515.
34. Reedy K., et al. Nitrification-denitrification at the plant root-sediment interface in wetlands. Limnolog. Oceanog. 1989, 34:241-302.
35. Woldendorp J.M. The quantitative influence of the rhizosphere on denitrification. Plant Soil 1962, 17:267-270.
36. Smith M.S., Tiedje J.M. The effect of roots on soil denitrification. Soil Sci. Soc. Am. J. 1979, 43:951-955.
37. Klemedtsson L., et al. Dinitrogen and nitrous oxide produced by denitrification and nitrification in soil with and without barley plants. Plant Soil 1987, 99:303-310.
38. Henry S., et al. Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates. Environ. Microbiol. 2008, 10:3082-3092.
39. Mounier E., et al. Influence of maize mucilage on the diversity and activity of the denitrifying community. Environ. Microbiol. 2004, 6:301-312.
40. Jia Z.J., et al. Effects of rice cultivars on methane fluxes in a paddy soil. Nutr. Cycl. Agroecosyst. 2002, 64:87-94.
41. Lou Y.S., et al. CH4 emission with differences in atmospheric CO2 enrichment and rice cultivars in a Japanese paddy soil. Glob. Change Biol. 2008, 14:2678-2687.
42. Aulakh M.S., et al. Characterization of root exudates at different growth stages of ten rice (Oryza sativa L.) cultivars. Plant Biol. 2001, 3:139-148.
43. Ma K.E., et al. Microbial mechanism for rice variety control on methane emission from rice field soil. Glob. Change Biol. 2010, 16:3085-3095.
44. Clays-Josserand A., et al. Effect of soil type and plant species on the fluorescent pseudomonads nitrate dissimilating community. Plant Soil 1999, 209:275-282.
45. Marschner P., et al. Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant Soil 2004, 261:199-208.
46. Conrad R., et al. Soil types links microbial colonization of rice roots to methane emission. Glob. Change Biol. 2008, 14:657-669.
47. Subbarao G.V., et al. Can biological nitrification inhibition (BNI) genes from perennial Leymus racemosus (Triticeae) combat nitrification in wheat farming?. Plant Soil 2007, 299:55-64.
48. Subbarao G.V., et al. Biological nitrification inhibition (BNI)-is there potential for genetic interventions in the Triticeae?. Breed. Sci. 2009, 59:529-545.
49. Subbarao G.V., et al. Biological nitrification inhibition (BNI)-is it a widespread phenomenon?. Plant Soil 2007, 294:5-18.
50. Richardson D., et al. Mitigating release of the potent greenhouse gas N2O from the nitrogen cycle-could enzymatic regulation hold the key?. Trends Biotechnol. 2009, 27:388-397.
51. DeFries R., Rosenzweig C. Toward a whole-landscape approach for sustainable land use in the tropics. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:19627-19632.
52. Green R.E., et al. Farming and the fate of wild nature. Science 2005, 307:550-555.
53. Searchinger T., et al. Use of US croplands for biofuels increases greenhouse gases through emissions from land-use change. Science 2008, 319:1238-1240.
54. Firestone M.K., Davidson E.A. Microbiological basis of NO and nitrous oxide production and consumption in soil. Exchange of Trace Gases Between Terrestrial Ecosystems and the Atmosphere 1989, 7-21. John Wiley & Sons. M.O. Andreae, D.S. Schimel (Eds.).