Anaerobic ammonium oxidation mediated by Mn-oxides: From sediment to strain level

Research in Microbiology

Volumn 162, Issue 9, 2011, Pages 848-857

  Javanaud, Cedric ^a,b   Michotey, Valerie ^a,b   Guasco, Sophie ^a,b   Garcia, Nicole ^a,b   Anschutz, Pierre ^c   Canton, Mathieu ^c   Bonin, Patricia ^a,b  

^a STATION MARINE D ENDOUME   (France)

^b CNRS   (France)

^c UNIVERSITÉ BORDEAUX 1   (France)

Author keywords

Anaerobic ammonium oxidation; Denitrification; Manganese; Nitrogen cycle

Indexed keywords

AMMONIA; MANGANESE OXIDE; NITRATE; OXYGEN; MANGANESE DERIVATIVE; NITRITE; NITROGEN; OXIDE; QUATERNARY AMMONIUM DERIVATIVE; RNA 16S; SEA WATER;

ANAEROBIC AMMONIUM OXIDATION; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; DENITRIFICATION; MARINOBACTER; MARINOBACTER DAEPOENSIS; NITRIFICATION; NITROUS OXIDE EMISSION; NUCLEOTIDE SEQUENCE; OXIDATION; OXYGEN CONCENTRATION; PRIORITY JOURNAL; SEDIMENTATION; SHEWANELLA; ANAEROBIC GROWTH; BACTERIAL COUNT; BAY; CHEMOAUTOTROPHY; FRANCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; OXIDATION REDUCTION REACTION; PHYLOGENY; PHYSIOLOGY; SEDIMENT;

BACTERIA (MICROORGANISMS); MARINOBACTER DAEPOENSIS; SHEWANELLA;

ANAEROBIOSIS; BAYS; CHEMOAUTOTROPHIC GROWTH; COLONY COUNT, MICROBIAL; DENITRIFICATION; FRANCE; GEOLOGIC SEDIMENTS; MANGANESE COMPOUNDS; MARINOBACTER; NITRATES; NITRIFICATION; NITRITES; NITROGEN; OXIDATION-REDUCTION; OXIDES; PHYLOGENY; QUATERNARY AMMONIUM COMPOUNDS; RNA, RIBOSOMAL, 16S; SEAWATER; SHEWANELLA;

EID: 80052312654     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2011.01.011     Document Type: Article

References (45)

1. 2, and C(Org) flux on diagenetic reaction balances. J. Mar. Res. 1994, 52:259-295.
2. Anschutz P., Dedieu K., Desmazes F., Chaillou G. Speciation, oxidation state, and reactivity of particulate manganese in marine sediments. Chem. Geol. 2005, 218:265-279.
3. Anschutz P., Sundby B., Lefrancois L., LutherIii G.W., Mucci A. Interactions between metal oxides and species of nitrogen and iodine in bioturbated marine sediments. Geochim. Cosmochim. Acta 2000, 64:2751-2763.
4. Bartlett R., Mortimer R.J.G., Morris K. Anoxic nitrification: evidence from Humber estuary sediments (UK). Chem. Geol. 2008, 250:29-39.
5. Bartlett R., Mortimer R.J.G., Morris K.M. The biogeochemistry of a manganese-rich Scottish sea loch: implications for the study of anoxic nitrification. Cont. Shelf Res. 2007, 27:1501-1509.
6. Baumann P., Baumann L. The marine gram negative eubacteria genus Protobacterium, Beneckae, Alteromonas, Pseudomonas and Alcaligenes. The Prokaryotes: A Handbook on Habitats, Isolation and Identification of Bacteria 1981, 1302-1330. Springer, Berlin Heidelberg New York. P.S. Mortimer, S. Heinz, H.G. Trüper, A. Balows, H.G. Schlegel (Eds.).
7. Bonin P., Omnes P., Chalamet A. Simultaneous occurence of denitrification and nitrate ammonification in sediments of the French mediterranean coast. Hydrobiologia 1998, 389:169-182.
8. Bonin P., Tamburini C., Michotey V. Determination of the bacterial processes which are sources of nitrous oxide production in marine samples. Water Res. 2002, 36:722-732.
9. Bonin P.C., Michotey V.D., Mouzdahir A., Rontani J.F. Anaerobic biodegradation of squalene: using DGGE to monitor the isolation of denitrifying bacteria taken from enrichment cultures. FEMS Microbiol. Ecol. 2002, 42:37-49.
10. Boogerd F.C., Devrind J.P.M. Manganese oxidation by Leptothrix-Discophora. J. Bacteriol. 1987, 169:489-494.
11. Bratina B.J., Stevenson B.S., Green W.J., Schmidt T.M. Manganese reduction by microbes from oxic regions of the Lake Vanda (Antarctica) water column. Appl. Environ. Microbiol. 1998, 64:3791-3797.
12. Dellwig O., Bosselmann K., Kolsch S., Hentscher M., Hinrichs J., Bottcher M.E., Reuter R., Brumsack H.J. Sources and fate of manganese in a tidal basin of the German Wadden Sea. J. Sea Res. 2007, 57:1-18.
13. Duran R. Marinobacter - Microbes and communities utilizing hydrocarbons, oils and lipids. Handbook of hydrocarbon and lipid microbiology 2010, 1725-1735. Springer-Verlag, Berlin Heidelberg. K.N. Timmis (Ed.).
14. Fenchel T. Formation of laminated cyanobacterial mats in the absence of benthic fauna. Aquat. Microb. Ecol. 1998, 14:235-240.
15. Froelich P.N., Klinkhammer G.P., Bender M.L., Luedtke N.A., Heath G.R., Cullen D., Dauphin P., Hammond D., et al. Early oxidation of organic-matter in Pelagic sediments of the Eastern Equatorial Atlantic - Suboxic diagenesis. Geochim. Cosmochim. Acta 1979, 43:1075-1090.
16. Hau H.H., Gralnick J.A. Ecology and biotechnology of the genus Shewanella. Annu. Rev. Microbiol. 2007, 61:237-258.
17. Hulth S., Aller R.C., Canfield D.E., Dalsgaard T., Engstrom P., Gilbert F., Sundback K., Thamdrup B. Nitrogen removal in marine environments: recent findings and future research challenges. Mar. Chem. 2005, 94:125-145.
18. Hulth S., Aller R.C., Gilbert F. Coupled anoxic nitrification/manganese reduction in marine sediments. Geochim. Cosmochim. Acta 1999, 63:49-66.
19. Johnson D., Chiswell B., Ohalloran K. Microorganisms and manganese cycling in a seasonally stratified fresh-water dam. Water Res. 1995, 29:2739-2745.
20. Kester R.A., deBoer W., Laanbroek H.J. Short exposure to acetylene to distinguish between nitrifier and denitrifier nitrous oxide production in soil and sediment samples. FEMS Microbiol. Ecol. 1996, 20:111-120.
21. Krause B., Beveridge T.J., Remsen C.C., Nealson K.H. Structure and properties of novel inclusions in Shewanella putrefaciens. FEMS Microbiol. Let. 1996, 139:63-69.
22. Laha S., Luthy R.G. Oxidation of aniline and other primary aromatic-amines by Manganese-Dioxide. Environ. Sci. Technol. 1990, 24:363-373.
23. Lovley D.R., Phillips E.J.P. Novel mode of microbial energy-metabolism - organic-carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl. Environ. Microbiol. 1988, 54:1472-1480.
24. Luther G.W., Sundby B., Lewis B.L., Brendel P.J., Silverberg N. Interactions of manganese with the nitrogen cycle: alternative pathways to dinitrogen. Geochim. Cosmochim. Acta 1997, 61:4043-4052.
25. Minjeaud L., Bonin P.C., Michotey V.D. Nitrogen fluxes from marine sediments: quantification of the associated co-occurring bacterial processes. Biogeochemistry 2008, 90:141-157.
26. Mortimer R.J.G., Harris S.J., Krom M.D., Freitag T.E., Prosser J.I., Barnes J., Anschutz P., Hayes P.J., et al. Anoxic nitrification in marine sediments. Mar. Ecol. Prog. Ser. 2004, 276:37-51.
27. Myers C.R., Nealson K.H. Bacterial manganese reduction and growth with manganese oxide as the sole electron-Acceptor. Science 1988, 240:1319-1321.
28. Nealson K.H. The Manganese-Oxidizing Bacteria. The Prokaryotes 2006, 222-231. Springer, New York.
29. Nielsen L.P. Denitrification in sediment determined from nitrogen isotope pairing. FEMS Microbiol. Ecol. 1992, 86:357-362.
30. Postma D., Jakobsen R. Redox zonation: Equilibrium constraints on the Fe(III)/SO4-reduction interface. Geochim. Cosmochim. Acta 1996, 60:3169-3175.
31. Roitz J.S., Flegal A.R., Bruland K.W. The biogeochemical cycling of manganese in San Francisco Bay: temporal and spatial variations in surface water concentrations. Estuar. Coast. Shelf Sci. 2002, 54:227-239.
32. Saitou N., Nei M. The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
33. Sundby B. Transient state diagenesis in continental margin muds. Mar. Chem. 2006, 102:2-12.
34. Takai K., Horikoshi K. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Appl. Environ. Microbiol. 2000, 66:5066-5072.
35. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
36. Tebo B.M., Ghiorse W.C., vanWaasbergen L.G., Siering P.L., Caspi R. Bacterially mediated mineral formation: insights into Manganese(II) oxidation from molecular genetic and biochemical studies. Geomicrobiology: Interactions between Microbes and Minerals 1997, vol. 35:225-266.
37. Tebo B.M., Bargar J.R., Clement B.G., Dick G.J., Murray K.J., Parker D., Verity R., Webb S.M. Biogenic manganese oxides: properties and mechanisms of formation. Annu. Rev. Earth Planet. Sci. 2004, 32:287-328.
38. Tebo B.M., Johnson H.A., McCarthy J.K., Templeton A.S. Geomicrobiology of Manganese(II) oxidation. Trends Microbiol. 2005, 13:421-428.
39. Thamdrup B., Dalsgaard T. The fate of ammonium in anoxic manganese oxide-rich marine sediment. Geochim. Cosmochim. Acta 2000, 64:4157-4164.
40. Thompson J.D., Higgins D.G., Gibson T.J. Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
41. Treguer P., Le Corre P. Manuel d'analyse des sels nutitifs dans l'eau de mer 1975, Université de Bretagne Occidentale.
42. Van Cappellen P., Viollier E., Roychoudhury A., Clark L., Ingall E., Lowe K., Dichristina T. Biogeochemical cycles of manganese and iron at the oxic-anoxic transition of a stratified marine basin (Orca basin, Gulf of Mexico). Environ. Sci. Tech. 1998, 32:2931-2939.
43. Van der Zee C., Van Raaphorst W. Manganese oxide reactivity in North Sea sediments. J. Sea Res. 2004, 52:73-85.
44. Winker S., Woese C.R. A definition of the domains archaea, bacteria and eucarya in terms of small subunit ribosomal-Rna characteristics. Syst. Appl. Microbiol. 1991, 14:305-310.
45. Zhou J.Z., Bruns M.A., Tiedje J.M. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 1996, 62:316-322.