Role of bacterial biomass in the sorption of Ni by biomass-birnessite assemblages

Environmental Science and Technology

Volumn 45, Issue 17, 2011, Pages 7338-7344

  Peña, Jasquelin ^a   Bargar, John R ^b   Sposito, Garrison ^a  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL BIOMASS; BACTERIAL CELLS; BIOMASS EFFECTS; BIRNESSITE; CATION VACANCIES; EXTENDED X-RAY ABSORPTION FINE STRUCTURES; EXTRA-CELLULAR POLYMERIC SUBSTANCES; HIGH LOADINGS; HIGH-AFFINITY SITES; LABORATORY EXPERIMENTS; METAL LOADINGS; METAL SORPTION; MINERAL COMPONENT; ORGANIC MATERIALS; PRECIPITATION REACTION; PSEUDOMONAS PUTIDA; REACTIVE MINERALS; SORPTION AFFINITY; SURFACE EXCESS; TRACE METAL;

ABSORPTION SPECTROSCOPY; ADSORPTION; BACTERIA; BACTERIOLOGY; BINDING SITES; BIOFILMS; BIOMASS; EXTENDED X RAY ABSORPTION FINE STRUCTURE SPECTROSCOPY; MANGANESE; METALS; SILICATE MINERALS; TRACE ELEMENTS;

POTASSIUM COMPOUNDS;

BIRNESSITE; CATION; MANGANESE OXIDE; MINERAL; NICKEL; UNCLASSIFIED DRUG;

ASSESSMENT METHOD; BACTERIUM; BIOMASS; BIRNESSITE; COMPARATIVE STUDY; CRYSTALLINITY; EXPERIMENTAL STUDY; LABORATORY METHOD; MINERAL; NICKEL; NUMERICAL MODEL; OXIDE; PH; POLYMER; PRECIPITATION (CHEMISTRY); SATURATION; SORPTION; TRACE METAL; X-RAY;

ADSORPTION; ARTICLE; BACTERIAL BIOMASS; BACTERIUM; BIOFILM; BIOMASS; METAL BINDING; NONHUMAN; PH; PRECIPITATION; PSEUDOMONAS PUTIDA; X RAY ABSORPTION SPECTROSCOPY;

ADSORPTION; BIOFILMS; BIOMASS; METALS; NICKEL; OXIDES; PSEUDOMONAS PUTIDA; X-RAY ABSORPTION SPECTROSCOPY;

BACTERIA (MICROORGANISMS); PSEUDOMONAS PUTIDA;

EID: 80052246512     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es201446r     Document Type: Article

References (35)

1. Tebo, B. M.; Bargar, J. R.; Clement, B. G.; Dick, G. J.; Murray, K. J.; Parker, D.; Verity, R.; Webb, S. M. Biogenic manganese oxides: Properties and mechanisms of formation Annu. Rev. Earth Planet. Sci. 2004, 32, 287-328 (Pubitemid 38836373)
2. Villalobos, M.; Lanson, B.; Manceau, A.; Toner, B.; Sposito, G. Structural model for the biogenic Mn oxide produced by Pseudomonas putida Am. Mineral. 2006, 91, 489-502
3. Tan, H.; Zhang, G. X.; Heaney, P. J.; Webb, S. M.; Burgos, W. D. Characterization of manganese oxide precipitates from Appalachian coal mine drainage treatment systems Appl. Geochem. 2010, 25, 389-399
4. Fuller, C. C.; Harvey, J. W. Reactive uptake of trace metals in the hyporheic zone of a mining-contaminated stream, Pinal Creek, Arizona Environ. Sci. Technol. 2000, 34, 1150-1155 (Pubitemid 30186005)
5. Haack, E. A.; Warren, L. A. Biofilm hydrous manganese oxyhydroxides and metal dynamics in acid rock drainage Environ. Sci. Technol. 2003, 37, 4138-4147 (Pubitemid 37108299)
6. Bodei, S.; Manceau, A.; Geoffroy, N.; Baronnet, A.; Buatier, M. Formation of todorokite from vernadite in Ni-rich hemipelagic sediments Geochim. Cosmochim. Acta 2007, 71, 5698-5716 (Pubitemid 350107715)
7. Peacock, C. L.; Sherman, D. M. Crystal-chemistry of Ni in marine ferromanganese crusts and nodules Am. Mineral. 2007, 92, 1087-1092 (Pubitemid 47162958)
8. Peña, J.; Kwon, K. D.; Refson, K.; Bargar, J. R.; Sposito, G. Mechanisms of nickel sorption by a bacteriogenic birnessite Geochim. Cosmochim. Acta 2010, 74, 3076-3089
9. Manceau, A.; Lanson, M.; Geoffroy, N. Natural speciation of Ni, Zn, Ba, and As in ferromanganese coatings on quartz using X-ray fluorescence, absorption, and diffraction Geochim. Cosmochim. Acta 2007, 71, 95-128 (Pubitemid 44914507)
10. Peacock, C. L. Physiochemical controls on the crystal-chemistry of Ni in birnessite: genetic implications for ferromanganese precipitates Geochim. Cosmochim. Acta 2009, 3568-3578
11. Toner, B.; Fakra, S.; Villalobos, M.; Warwick, T.; Sposito, G. Spatially resolved characterization of biogenic manganese oxide production within a bacterial biofilm Appl. Environ. Microbiol. 2005, 71, 1300-1310 (Pubitemid 40396669)
12. Toner, B.; Manceau, A.; Webb, S. M.; Sposito, G. Zinc sorption to biogenic hexagonal-birnessite particles within a hydrated bacterial biofilm Geochim. Cosmochim. Acta 2006, 70, 27-43 (Pubitemid 43009892)
13. Zhu, M. Q.; Ginder-Vogel, M.; Sparks, D. L. Ni(II) Sorption on Biogenic Mn-Oxides with Varying Mn Octahedral Layer Structure Environ. Sci. Technol. 2010, 44, 4472-4478
14. Schecher, W. D.; McAvoy, D. C.; MINEQL+. 2001
15. Scheinost, A. C.; Sparks, D. L. Formation of layered single- and double-metal hydroxide precipitates at the mineral/water interface: A multiple-scattering XAFS analysis J. Colloid Interface Sci. 2000, 223, 167-178 (Pubitemid 30158290)
16. Strathmann, T. J.; Myneni, S. C. B. Speciation of aqueous Ni(II)-carboxylate and Ni(II)-fulvic acid solutions: Combined ATR-FTIR and XAFS analysis Geochim. Cosmochim. Acta 2004, 68, 3441-3458 (Pubitemid 39483628)
17. Lonescu, M.; Bhatia, N. P.; Cohen, D. D.; Kachenko, A.; Siegele, R.; Marcus, M. A.; Fakra, S.; Foran, G. X-ray absorption spectroscopy at the Ni-K edge in Stackhousia tryonii Bailey hyperaccumulator X-Ray Spectrom. 2008, 37, 629-634
18. Webb, S. M. SIXPack: A graphical user interface for XAS analysis using IFEFFIT Phys. Scr. 2004, T115, 1011-1014
19. Rhehr, J. J.; Zabinsky, S. I.; Albers, R. C. High-order multiple scattering calculations of X-ray-absorption fine structure Phys. Rev. Lett. 1992, 69, 3397
20. Graf, D. L. Crystallographic Tables for the Rhombohedral Carbonates Am. Mineral. 1961, 46, 1283-1316
21. Fein, J. B.; Martin, A. M.; Wightman, P. G. Metal adsorption onto bacterial surfaces: Development of a predictive approach Geochim. Cosmochim. Acta 2001, 65, 4267-4273 (Pubitemid 34021294)
22. Sposito, G. The Chemistry of Soils; 2 nd ed.; Oxford University Press: New York, 2008.
23. Xia, K.; Bleam, W.; Helmke, P. A. Studies of the nature of binding sites of first row transition elements bound to aquatic and soil humic substances using X-ray absorption spectroscopy Geochim. Cosmochim. Acta 1997, 61, 2223-2235
24. Kramer, U.; CotterHowells, J. D.; Charnock, J. M.; Baker, A. J. M.; Smith, J. A. C. Free histidine as a metal chelator in plants that accumulate nickel Nature 1996, 379, 635-638 (Pubitemid 26052823)
25. Renner, M. W.; Furenlid, L. R.; Barkigia, K. M.; Fajer, J. XAFS and crystallographic studies of Ni(II) porphyrins in single crystals and solution J. Phys. IV 1997, 7, 661-662
26. Sarret, G.; Manceau, A.; Spadini, L.; Roux, J. C.; Hazemann, J. L.; Soldo, Y.; Eybert-Berard, L.; Menthonnex, J. J. Structural determination of Zn and Pb binding sites in Penicillium chrysogenum cell walls by EXAFS spectroscopy Environ. Sci. Technol. 1998, 32, 1648-1655 (Pubitemid 28265356)
27. Uzel, A.; Ozdemir, G. Metal biosorption capacity of the organic solvent tolerant Pseudomonas fluorescens TEM08 Bioresour. Technol. 2009, 100, 542-548
28. Toner, B.; Manceau, A.; Marcus, M. A.; Millet, D. B.; Sposito, G. Zinc sorption by a bacterial biofilm Environ. Sci. Technol. 2005, 39, 8288-8294 (Pubitemid 41572414)
29. Guine, V.; Spadini, L.; Sarret, G.; Muris, M.; Delolme, C.; Gaudet, J. P.; Martins, J. M. F. Zinc sorption to three gram-negative bacteria: Combined titration, modeling, and EXAFS study Environ. Sci. Technol. 2006, 40, 1806-1813
30. Templeton, A. S.; Trainor, T. P.; Traina, S. J.; Spormann, A. M.; Brown, G. E. Pb(II) distributions at biofilm-metal oxide interfaces Proc. Natl. Acad. Sci. U. S. A. 2001, 98, 11897-11902 (Pubitemid 32959798)
31. Templeton, A. S.; Spormann, A. M.; Brown, G. E. Speciation of Pb(II) sorbed by Burkholderia cepacia /goethite composites Environ. Sci. Technol. 2003, 37, 2166-2172 (Pubitemid 36593039)
32. Scheidegger, A. M.; Lamble, G. M.; Sparks, D. L. Investigation of Ni sorption on pyrophyllite: An XAFS study Environ. Sci. Technol. 1996, 30, 548-554 (Pubitemid 26045203)
33. Nachtegaal, M.; Sparks, D. L. Nickel sequestration in a kaolinite-humic acid complex Environ. Sci. Technol. 2003, 37, 529-534 (Pubitemid 36159642)
34. Scheinost, A. C.; Ford, R. G.; Sparks, D. L. The role of Al in the formation of secondary Ni precipitates on pyrophyllite, gibbsite, talc, and amorphous silica: A DRS study Geochim. Cosmochim. Acta 1999, 63, 3193-3203 (Pubitemid 30106851)
35. Scheckel, K. G.; Sparks, D. L. Dissolution kinetics of nickel surface precipitates on clay mineral and oxide surfaces Soil Sci. Soc. Am. J. 2001, 65, 685-694 (Pubitemid 32550443)