Proton evolved local field solid-state nuclear magnetic resonance using Hadamard encoding: Theory and application to membrane proteins

Journal of Chemical Physics

Volumn 135, Issue 7, 2011, Pages

  Gopinath, T ^a   Mote, Kaustubh R ^a   Veglia, Gianluigi ^a,b  

^a Molecular Biology and Biophysics ^*  (United States)

^b University of Minnesota   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2D SPECTRA; ALIGNED MEMBRANE; BICELLES; DATA SETS; DIPOLAR COUPLINGS; HADAMARD; LIQUID-CRYSTALLINE; LOCAL FIELDS; MEMBRANE PROTEINS; MIXING TIME; MOLECULAR MOTIONS; PHASE SWITCHING; SEPARATED LOCAL FIELDS; SOLID-STATE NUCLEAR MAGNETIC RESONANCE; SPEED-UPS; SPIN OPERATORS; STRUCTURE AND DYNAMICS; STRUCTURE AND ORIENTATION;

BIOLOGICAL MEMBRANES; CRYSTAL ORIENTATION; ENCODING (SYMBOLS); EXPERIMENTS; LIQUID CRYSTALS; MAGNETIC COUPLINGS; NUCLEAR MAGNETIC RESONANCE; POLYPEPTIDES; PROTONS; RESONANCE; SINGLE CRYSTALS;

PROTEINS;

HYBRID PROTEIN; MEMBRANE PROTEIN; MUSCLE PROTEIN; PROTEOLIPID; PROTON; SARCOLIPIN;

ARTICLE; CHEMISTRY; ESCHERICHIA COLI; GENETICS; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE;

ESCHERICHIA COLI; MEMBRANE PROTEINS; MUSCLE PROTEINS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEOLIPIDS; PROTONS; RECOMBINANT FUSION PROTEINS;

EID: 80052049670     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3622604     Document Type: Article

References (47)

1. S. J. Opella and F. M. Marassi, Chem. Rev. 104 (8), 3587 (2004). 10.1021/cr0304121
2. T. A. Cross and S. J. Opella, Curr. Opin. Struct. Biol. 4, 574 (1994). 10.1016/S0959-440X(94)90220-8
3. J. S. Waugh, Proc. Natl. Acad. Sci. U.S.A. 73 (5), 1394 (1976). 10.1073/pnas.73.5.1394
4. J. K. Denny, J. Wang, T. A. Cross, and J. R. Quine, J. Magn. Reson. 152 (2), 217 (2001). 10.1006/jmre.2001.2405
5. M. F. Mesleh, S. Lee, G. Veglia, D. S. Thiriot, F. M. Marassi, and S. J. Opella, J. Am. Chem. Soc. 125 (29), 8928 (2003). 10.1021/ja034211q (Pubitemid 36886231)
6. M. F. Mesleh, G. Veglia, T. M. DeSilva, F. M. Marassi, and S. J. Opella, J. Am. Chem. Soc. 124 (16), 4206 (2002). 10.1021/ja0178665 (Pubitemid 34441543)
7. F. M. Marassi, Biophys. J. 80 (2), 994 (2001). 10.1016/S0006-3495(01) 76078-X
8. A. Mascioni and G. Veglia, J. Am. Chem. Soc. 125 (41), 12520 (2003). 10.1021/ja0354824 (Pubitemid 37254767)
9. R. W. Knox, G. J. Lu, S. J. Opella, and A. A. Nevzorov, J. Am. Chem. Soc. 132, 8255 (2010). 10.1021/ja102932n
10. R. R. Ketchem, K. C. Lee, S. Huo, and T. A. Cross, J. Biomol. NMR 8 (1), 1 (1996). 10.1007/BF00198135
11. S. V. Dvinskikh, H. Zimmermann, A. Maliniak, and D. Sandstrm, J. Magn. Reson. 164 (1), 165 (2003). 10.1016/S1090-7807(03)00180-0
12. S. V. Dvinskikh, H. Zimmermann, A. Maliniak, and D. Sandstrm, J. Magn. Reson. 163 (1), 46 (2003). 10.1016/S1090-7807(03)00058-2
13. S. Jayanthi, P. K. Madhu, and K. V. Ramanathan, J. Phys. Chem. A 112 (44), 11159 (2008). 10.1021/jp804764q
14. A. A. De Angelis, S. C. Howell, A. A. Nevzorov, and S. J. Opella, J. Am. Chem. Soc. 128 (37), 12256 (2006). 10.1021/ja063640w (Pubitemid 44413857)
15. M. Sharma, M. Yi, H. Dong, H. Qin, E. Peterson, D. D. Busath, H. Zhou, and T. A. Cross, Science 330 (6003), 509 (2010). 10.1126/science.1191750
16. N. J. Traaseth, L. Shi, R. Verardi, D. G. Mullen, G. Barany, and G. Veglia, Proc. Natl. Acad. Sci. U.S.A. 106 (25), 10165 (2009). 10.1073/pnas.0904290106
17. R. Verardi, L. Shi, N. J. Traaseth, N. Walsh, and G. Veglia, Proc. Natl. Acad. Sci. U.S.A. 108 (22), 9101 (2011). 10.1073/pnas.1016535108
18. R. Soong, P. E. S. Smith, J. Xu, K. Yamamoto, S. Im, L. Waskell, and A. Ramamoorthy, J. Am. Chem. Soc. 132 (16), 5779 (2010). 10.1021/ja910807e
19. A. Ramamoorthy, Y. Wei, and L. Dong-Kuk, Annu. Rev. NMR Spectrosc. 52, 1 (2004). 10.1016/S0066-4103(04)52001-X (Pubitemid 39752334)
20. Z. Gan, J. Magn. Reson. 143 (1), 136 (2000). 10.1006/jmre.1999.1971
21. C. H. Wu, A. Ramamoorthy, and S. J. Opella, J. Mag. Reson. 109 (2), 270 (1994). 10.1006/jmra.1994.1169
22. A. A. Nevzorov and S. J. Opella, J. Magn. Reson. 185 (1), 59 (2007). 10.1016/j.jmr.2006.09.006 (Pubitemid 46484391)
23. S. V. Dvinskikh, K. Yamamoto, and A. Ramamoorthy, J. Chem. Phys. 125 (3), 34507 (2006). 10.1063/1.2212939 (Pubitemid 44107148)
24. T. Gopinath and G. Veglia, J. Am. Chem. Soc. 131 (16), 5754 (2009). 10.1021/ja900096d
25. T. Gopinath, R. Verardi, N. J. Traaseth, and G. Veglia, J. Phys. Chem. B 114, 5089 (2010). 10.1021/jp909778a
26. T. Gopinath, N. J. Traaseth, K. Mote, and G. Veglia, J. Am. Chem. Soc. 132 (15), 5357 (2010). 10.1021/ja905991s
27. T. Gopinath and G. Veglia, Chem. Phys. Lett. 494 (1-3), 104 (2010). 10.1016/j.cplett.2010.05.078
28. S. V. Dvinskikh, U. H. N. Drr, K. Yamamoto, and A. Ramamoorthy, J. Am. Chem. Soc. 129 (4), 794 (2007). 10.1021/ja065536k (Pubitemid 46183929)
29. S. V. Dvinskikh, K. Yamamoto, D. Scanu, R. Deschenaux, and A. Ramamoorthy, J. Phys. Chem. B 112 (39), 12347 (2008). 10.1021/jp803265z
30. C. H. Wu, B. B. Das, and S. J. Opella, J. Magn. Reson. 202 (2), 127 (2010). 10.1016/j.jmr.2009.10.007
31. R. Fu, E. D. Gordon, D. J. Hibbard, and M. Cotten, J. Am. Soc. 131 (31), 10830 (2009). 10.1021/ja903999g
32. R. Fu, M. Truong, R. J. Saager, M. Cotten, and T. A. Cross, J. Magn. Reson. 188 (1), 41 (2007). 10.1016/j.jmr.2007.06.004 (Pubitemid 47369677)
33. G. Veglia, K. N. Ha, L. Shi, R. Verardi, and N. J. Traaseth, Methods Mol. Biol. 654, 303 (2010). 10.1007/978-1-60761-762-4
34. A. Bielecki, A. C. Kolbert, H. J. M. de Groot, R. G. Griffin, and M. H. Levitt, Adv. Magn. Reson. 14, 111 (1989).
35. P. Caravatti, L. Braunschweiler, and R. R. Ernst, Chem. Phys. Lett. 100 (4), 305 (1983). 10.1016/0009-2614(83)80276-0
36. E. Kupce and R. Freeman, J. Magn. Reson. 163 (1), 56 (2003). 10.1016/S1090-7807(03)00036-3
37. T. Gopinath and A. Kumar, J. Magn. Reson. 183 (2), 259 (2006). 10.1016/j.jmr.2006.09.001 (Pubitemid 44739349)
38. J. Cavanagh and M. Rance, J. Magn. Reson. 88, 72 (1990).
39. L. E. Kay, E. Keifer, and T. Saarinen, J. Am. Chem. Soc. 114 (26), 10663 (1992). 10.1021/ja00052a088
40. V. V. Krishnamurthy, J. Magn. Reson. B 160, 170 (1995). 10.1006/jmrb.1995.1028
41. B. Buck, J. Zamoon, T. L. Kirby, T. M. DeSilva, C. Karim, D. D. Thomas, and G. Veglia, Protein Expression Purif. 30 (2), 253 (2003). 10.1016/S1046-5928(03)00127-X (Pubitemid 36990339)
42. J. J. Buffy, B. A. Buck-Koehntop, F. Porcelli, N. J. Traaseth, D. D. Thomas, and G. Veglia, J. Mol. Biol. 358 (2), 420 (2006). 10.1016/j.jmb.2006.02. 005
43. P. L. Gorkov, E. Y. Chekmenev, C. Li, M. Cotten, J. J. Buffy, N. J. Traaseth, G. Veglia, and W. W. Brey, J. Magn. Reson. 185 (1), 77 (2007). 10.1016/j.jmr.2006.11.008 (Pubitemid 46484398)
44. B. M. Fung, A. K. Khitrin, and K. Ermolaev, J. Magn. Reson. 142 (1), 97 (2000). 10.1006/jmre.1999.1896
45. F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer, and A. Bax, J. Biomol. NMR 6, 277 (1995). 10.1007/BF00197809
46. A. Mascioni, C. B. Karim, G. Barany, D. D. Thomas, and G. Veglia, Biochemistry 41 (2), 475 (2002). 10.1021/bi011243m (Pubitemid 34062016)
47. N. J. Traaseth, K. N. Ha, R. Verardi, L. Shi, J. J. Buffy, L. R. Masterson, and G. Veglia, Biochemistry 47 (1), 3 (2008). 10.1021/bi701668v