Cryphonectria naterciae: A new species in the Cryphonectria-Endothia complex and diagnostic molecular markers based on microsatellite-primed PCR

Fungal Biology

Volumn 115, Issue 9, 2011, Pages 852-861

  Bragança, Helena ^a   Rigling, Daniel ^b   Diogo, Eugénio ^a   Capelo, Jorge ^a   Phillips, Alan ^d   Tenreiro, Rogério ^c  

^a Estacao Florestal Nacional   (Portugal)

^b SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

^c UNIVERSITY OF LISBON   (Portugal)

^d UNIVERSIDADE NOVA DE LISBOA   (Portugal)

Author keywords

Chestnut tree; Cork oak tree; Cryphonectria parasitica; Endothiella gyrosa; MSP PCR; RFLP PCR

Indexed keywords

DECIDUOUS TREE; FUNGAL DISEASE; FUNGUS; GENETIC MARKER; MOLECULAR ANALYSIS; NEW SPECIES; PHYLOGENETICS; POLYMERASE CHAIN REACTION;

MIDWEST; PORTUGAL; UNITED STATES;

CASTANEA SATIVA; CRYPHONECTRIA; CRYPHONECTRIA PARASITICA; CRYPHONECTRIA RADICALIS; CRYPHONECTRIA-ENDOTHIA COMPLEX; ENDOTHIELLA GYROSA; QUERCUS SUBER;

EID: 80052032780     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2011.06.014     Document Type: Article

References (34)

1. Anagnostakis S. Chestnut blight: the classic problem of an introduced pathogen. Mycologia 1987, 79:23-37.
2. Barr M. The Diaporthales of North America with emphasis on Gnomonia and its segregates. Mycologia Memoir 1978, 7:1-232.
3. Bissegger M., Rigling D., Heiniger U. Population structure and disease development of Cryphonectria parasitica in European chestnut forests in the presence of natural hypovirulence. Phytopathology 1997, 87:50-59.
4. Bragança H., Simões S., Onofre N., Tenreiro R., Rigling D. Cryphonectria parasitica in Portugal - diversity of vegetative compatibility types, mating types, and occurrence of hypovirulence. Forest Pathology 2007, 37:391-402.
5. Câmara M, 1929. Contributiones ad Mycofloram Lusitaniae, Centuriae VIII et IX. In: Anais do Instituto Superior de Agronomia, Vol. 3, Lisboa, 1930, pp. 34.
6. Castlebury A., Rossman Y., Jaklitsch J., Vasilyeva L. A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 2002, 94:1017-1031.
7. Elliston J.E. Hypovirulence. Advances in Plant Pathology 1982, 1:1-33.
8. Gadanho M., Almeida J., Sampaio J. Assessment of yeast diversity in a marine environment in the south of Portugal by microsatellite-primed PCR. Antonie van Leeuwonhoek 2003, 84:217-227.
9. Glass L., Donaldson G. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied Environmental Microbiology 1995, 61:1323-1330.
10. Gryzenhout M., Myburg H., Van der Merwe N., Wingfield B., Wingfield M. Chrysoporthe, a new genus to accommodate Cryphonectria cubensis. Studies in Mycology 2004, 50:119-142.
11. Gryzenhout M., Myburg H., Wingfield B., Wingfield M. Cryphonectriaceae (Diaporthales) a new family including Cryphonectria, Chrysoporthe, Endothia and allied genera. Mycologia 2006, 98:239-249.
12. Gryzenhout M., Wingfield B., Wingfield M. New taxonomic concepts for the important forest pathogen Cryphonectria parasitica and related fungi. FEMS Microbiology Letters 2006, 258:161-172.
13. Gryzenhout M., Myburg H., Hodges C., Wingfield B., Wingfield M. Microthia, Holocryphia and Ursicollum, three new genera on Eucalyptus and Coccoloba for fungi previously known as Cryphonectria. Studies in Mycology 2006, 55:35-52.
14. Heiniger U., Rigling D. Biological control of chestnut blight in Europe. Annual Review of Phytopathology 1994, 32:581-599.
15. Hoegger P., Rigling D., Holdenrieder O., Heiniger U. Cryphonectria radicalis: rediscovery of a lost fungus. Mycologia 2002, 94:105-115.
16. Keuls M. The use of the " studentized range" in connection with an analysis of variance. Euhytica 1952, 1:112-122.
17. Meyer W., Mitchell T., Freedman E., Vilgalys R. Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. Journal of Clinical Microbiology 1993, 31:2274-2280.
18. Milgroom M., Cortesi P. Biological control of chestnut blight with hypovirulence: a critical analysis. Annual Review of Phytopathology 2004, 42:311-338.
19. Myburg H., Wingfield B., Wingfield M. Phylogeny of Cryphonectria cubensis and allied species inferred from DNA analysis. Mycologia 1999, 91:243-250.
20. Myburg H., Gryzenhout M., Wingfield B., Wingfield M. ß-tubulin and Histone H3 gene sequences distinguish Cryphonectria cubensis from South Africa, Asia and South America. Canadian Journal of Botany 2002, 80:590-596.
21. Myburg H., Gryzenhout M., Wingfield B., Milgroom M., Kaneco S., Wingfield M. DNA sequence data and morphology define Cryphonectria species in Europe, China, and Japan. Canadian Journal of Botany 2004, 82:1730-1743.
22. Myburg H., Gryzenhout M., Wingfield B., Stipes R., Wingfield M. Phylogenetic relationships of Cryphonectria and Endothia species, based on DNA sequence data and morphology. Mycologia 2004, 96:990-1001.
23. Newman D. The distribution of range in samples from a normal population expressed in terms of an independent estimate of standard deviation. Biometrika 1939, 31:20-30.
24. Radócz L., Tarcali G. Identification of natural Infection of Quercus spp. by chestnut blight fungus (Cryphonectria parasitica). Acta Horticulturae 2005, 693:617-626.
25. Raeder U., Broda P. Rapid preparation of DNA from filamentous fungi. Letters in Applied Microbiology 1985, 1:17-20.
26. Roane M, Griffin G, Elkins J, 1986. Chestnut Blight, Other Endothia Diseases and the Genus Endothia. APS Monograph Series. St Paul, MN, USA.
27. Roque H., Vieira R., Rato S., Luz-Martins M. Specific primers for rapid detection of Microsporum audouinii by PCR in clinical samples. Journal of Clinical Microbiology 2006, 44:4336-4341.
28. Sampaio J., Gadanho M., Santos S., Duarte F., Pais C., Fonseca A., Fell J. Polyphasic taxonomy of the genus Rhodosporidium: R.kratochvilovae and related anamorphic species. International Journal of Systematic and Evolutionary Microbiology 2001, 51:687-697.
29. Santos N., Bragança H., Casimiro P. Microrganismos Associados à Cortiça em Diferentes Fases da sua Fileira. Silva Lusitana 2005, 13:75-93.
30. Santos J.M., Phillips A.J.L. Resolving the complex of Diaporthe (Phomopsis) species occurring on Foeniculum vulgare in Portugal. Fungal Divers 2009, 34:111-125.
31. Swofford D.L. PAUP 4.0b10: phylogenetic analysis using parsimony 2002, Sinauer Associates, Sunderland, MA, USA.
32. Torsello M., Davis D., Nash B. Incidence of Cryphonectria parasitica cankers on scarlet oak (Quercus coccinea) in Pensylvania. Plant Disease 1994, 78:313-315.
33. Venter M., Myburg H., Wingfield B., Coutinho T., Wingfield M. A new species of Cryphonectria from South Africa and Australia, pathogenic to Eucalyptus. Sydowia 2002, 54:98-117.
34. White T.J., Bruns T.D., Lee S., Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenies. PCR protocols: a guide to methods and applications 1990, 135-322. Academic Press, San Diego, CA, USA. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T. White (Eds.).