메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN ARCHITECTURE; CONNECTION MATRICES; CONNECTION STRENGTH; DESIGN AND IMPLEMENTATIONS; EXPERIMENTAL EVIDENCE; EXPERIMENTAL PROTOCOLS; SCIENTIFIC OBSERVATIONS; SCIENTIFIC PUBLICATIONS;

EID: 80052032711     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-351     Document Type: Article
Times cited : (40)

References (74)
  • 3
    • 0016861699 scopus 로고
    • Hippocampo-hypothalamic connections: origin in subicular cortex, not ammon's horn
    • 10.1126/science.49928, 49928
    • Swanson LW, Cowan WM. Hippocampo-hypothalamic connections: origin in subicular cortex, not ammon's horn. Science 1975, 189(4199):303-4. 10.1126/science.49928, 49928., http://www.ncbi.nlm.nih.gov/pubmed?term=49928
    • (1975) Science , vol.189 , Issue.4199 , pp. 303-304
    • Swanson, L.W.1    Cowan, W.M.2
  • 6
    • 34447505080 scopus 로고    scopus 로고
    • Alzforum and SWAN: the present and future of Scientific web communities
    • 10.1093/bib/bbm012, 17510163
    • Clark T, Kinoshita J. Alzforum and SWAN: the present and future of Scientific web communities. Brief Bioinform 2007, 8(3):163-71. 10.1093/bib/bbm012, 17510163.
    • (2007) Brief Bioinform , vol.8 , Issue.3 , pp. 163-171
    • Clark, T.1    Kinoshita, J.2
  • 7
    • 0025718412 scopus 로고
    • Distributed hierarchical processing in the primate cerebral cortex
    • Felleman DJ, Van Essen DC. Distributed hierarchical processing in the primate cerebral cortex. Cereb Cortex 1991, 1:1-47.
    • (1991) Cereb Cortex , vol.1 , pp. 1-47
    • Felleman, D.J.1    Van Essen, D.C.2
  • 8
    • 84888284027 scopus 로고    scopus 로고
    • Neural connectivity in the rat: theory, methods and applications
    • Burns G. Neural connectivity in the rat: theory, methods and applications. Dphil Oxford University 1997, , http://www.neuroscholar.org/Download_files/Burns-DPhil-Thesis-1997.pdf
    • (1997) Dphil Oxford University
    • Burns, G.1
  • 9
    • 0035968438 scopus 로고    scopus 로고
    • Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac)
    • 10.1098/rstb.2001.0908, 1088509, 11545697
    • Stephan KE, Kamper L, Bozkurt A, Burns GA, Young MP, Kotter R. Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac). Philos Trans R Soc Lond B Biol Sci 2001, 356(1412):1159-86. 10.1098/rstb.2001.0908, 1088509, 11545697.
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , Issue.1412 , pp. 1159-1186
    • Stephan, K.E.1    Kamper, L.2    Bozkurt, A.3    Burns, G.A.4    Young, M.P.5    Kotter, R.6
  • 10
    • 24944447969 scopus 로고    scopus 로고
    • The Brain Architecture Management System
    • 10.1385/NI:3:1:015, 15897615
    • Bota M, Dong H, Swanson LW. The Brain Architecture Management System. Neuroinformatics 2005, 3:15-48. 10.1385/NI:3:1:015, 15897615.
    • (2005) Neuroinformatics , vol.3 , pp. 15-48
    • Bota, M.1    Dong, H.2    Swanson, L.W.3
  • 11
    • 62849101387 scopus 로고    scopus 로고
    • The anatomy of memory: an interactive overview of the parahippocampal-hippocampal network
    • 10.1038/nrn2614, 19300446
    • van Strien NM, Cappaert NL, Witter MP. The anatomy of memory: an interactive overview of the parahippocampal-hippocampal network. Nat Rev Neurosci 2009, 10(4):272-82. 10.1038/nrn2614, 19300446.
    • (2009) Nat Rev Neurosci , vol.10 , Issue.4 , pp. 272-282
    • van Strien, N.M.1    Cappaert, N.L.2    Witter, M.P.3
  • 12
    • 0026684846 scopus 로고
    • Objective analysis of the topological organization of the primate cortical visual system
    • 10.1038/358152a0, 1614547
    • Young MP. Objective analysis of the topological organization of the primate cortical visual system. Nature 1992, 358(6382):152-5. 10.1038/358152a0, 1614547.
    • (1992) Nature , vol.358 , Issue.6382 , pp. 152-155
    • Young, M.P.1
  • 13
    • 0028909231 scopus 로고
    • Analysis of connectivity in the cat cerebral cortex
    • Scannell JW, Blakemore C, Young MP. Analysis of connectivity in the cat cerebral cortex. J Neurosci 1995, 15(2):1463-83.
    • (1995) J Neurosci , vol.15 , Issue.2 , pp. 1463-1483
    • Scannell, J.W.1    Blakemore, C.2    Young, M.P.3
  • 14
    • 0034728117 scopus 로고    scopus 로고
    • Analysis of the connectional organization of neural systems associated with the hippocampus in rats
    • 10.1098/rstb.2000.0549, 1692716, 10703044
    • Burns GA, Young MP. Analysis of the connectional organization of neural systems associated with the hippocampus in rats. Philos Trans R Soc Lond B Biol Sci 2000, 355(1393):55-70. 10.1098/rstb.2000.0549, 1692716, 10703044.
    • (2000) Philos Trans R Soc Lond B Biol Sci , vol.355 , Issue.1393 , pp. 55-70
    • Burns, G.A.1    Young, M.P.2
  • 15
    • 60549103853 scopus 로고    scopus 로고
    • Complex brain networks: graph theoretical analysis of structural and functional systems
    • 10.1038/nrn2575, 19190637
    • Bullmore E, Sporns O. Complex brain networks: graph theoretical analysis of structural and functional systems. Nat Rev Neurosci 2009, 10(3):186-98. 10.1038/nrn2575, 19190637.
    • (2009) Nat Rev Neurosci , vol.10 , Issue.3 , pp. 186-198
    • Bullmore, E.1    Sporns, O.2
  • 17
    • 46849119189 scopus 로고
    • General approaches and laboratory procedures
    • New York and London: Plenum Press, Heimer L, Robads M
    • Blackstad T, Heimer L, Mugaini E. General approaches and laboratory procedures. Neuroanatomical tract tracing techniques 1981, New York and London: Plenum Press, Heimer L, Robads M.
    • (1981) Neuroanatomical tract tracing techniques
    • Blackstad, T.1    Heimer, L.2    Mugaini, E.3
  • 18
    • 38349161601 scopus 로고    scopus 로고
    • Intelligent Approaches to Mining the Primary Research Literature: Techniques, Systems, and Examples
    • Springer, Kelemen A, Abraham A, Chen Y, Liang Y
    • Burns GA, Feng D, Hovy EH. Intelligent Approaches to Mining the Primary Research Literature: Techniques, Systems, and Examples. Computational Intelligence in Medical Informatics 2008, Springer, Kelemen A, Abraham A, Chen Y, Liang Y.
    • (2008) Computational Intelligence in Medical Informatics
    • Burns, G.A.1    Feng, D.2    Hovy, E.H.3
  • 19
    • 78650538248 scopus 로고    scopus 로고
    • Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture
    • 10.1073/pnas.1015128107, 2996420, 21078980
    • Swanson LW, Bota M. Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture. Proc Natl Acad Sci USA 2010, 107(48):20610-7. 10.1073/pnas.1015128107, 2996420, 21078980., http://www.ncbi.nlm.nih.gov/pubmed?term=21078980
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.48 , pp. 20610-20617
    • Swanson, L.W.1    Bota, M.2
  • 20
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: a structural description of the human brain
    • 10.1371/journal.pcbi.0010042, 1239902, 16201007
    • Sporns O, Tononi G, Kotter R. The human connectome: a structural description of the human brain. PLoS Comput Biol 2005, 1(4):e42. 10.1371/journal.pcbi.0010042, 1239902, 16201007.
    • (2005) PLoS Comput Biol , vol.1 , Issue.4
    • Sporns, O.1    Tononi, G.2    Kotter, R.3
  • 22
    • 14044262855 scopus 로고    scopus 로고
    • Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
    • 10.1371/journal.pbio.0020329, 524270, 15514700
    • Denk W, Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol 2004, 2(11):e329. 10.1371/journal.pbio.0020329, 524270, 15514700.
    • (2004) PLoS Biol , vol.2 , Issue.11
    • Denk, W.1    Horstmann, H.2
  • 23
    • 78149370793 scopus 로고    scopus 로고
    • An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy
    • Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V. An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. PLoS Biol 2010, 8(10)., http://www.ncbi.nlm.nih.gov/pubmed?term=20957184
    • (2010) PLoS Biol , vol.8 , Issue.10
    • Cardona, A.1    Saalfeld, S.2    Preibisch, S.3    Schmid, B.4    Cheng, A.5    Pulokas, J.6    Tomancak, P.7    Hartenstein, V.8
  • 24
    • 84888275839 scopus 로고    scopus 로고
    • PowerLoom® Knowledge Representation & Reasoning System
    • PowerLoom® Knowledge Representation & Reasoning System. , http://www.isi.edu/isd/LOOM/PowerLoom/
  • 28
    • 80052892245 scopus 로고    scopus 로고
    • DataFinder: Using Ontologies and Reasoning to Enhance Metadata Search
    • [Fall Meeting Supplement, Abstract IN43A-0326. Abstract only.]
    • Russ TA, Chalupsky H. DataFinder: Using Ontologies and Reasoning to Enhance Metadata Search. Eos Trans 2005, 86(52). [Fall Meeting Supplement, Abstract IN43A-0326. Abstract only.].
    • (2005) Eos Trans , vol.86 , Issue.52
    • Russ, T.A.1    Chalupsky, H.2
  • 30
    • 0025131427 scopus 로고
    • Connections of the Retrosplenial Granular a Cortex in the Rat
    • 10.1002/cne.903000412, 2273095
    • van Groen T, Wyss JM. Connections of the Retrosplenial Granular a Cortex in the Rat. J Comp Neurol 1990, 300(4):593-606. 10.1002/cne.903000412, 2273095.
    • (1990) J Comp Neurol , vol.300 , Issue.4 , pp. 593-606
    • van Groen, T.1    Wyss, J.M.2
  • 31
    • 84888284147 scopus 로고    scopus 로고
    • BAMS Main Page
    • BAMS Main Page. , http://brancusi.usc.edu/bkms/
  • 33
    • 84888279358 scopus 로고    scopus 로고
    • Kap Lab -- Diagrammer
    • Kap Lab -- Diagrammer. , http://lab.kapit.fr/display/diagrammer/Diagrammer
  • 34
    • 77954712216 scopus 로고    scopus 로고
    • Flare -- Data Visualization for the web
    • Flare -- Data Visualization for the web. , http://flare.prefuse.org/
  • 35
    • 84888274972 scopus 로고    scopus 로고
    • Persevere -- Persevere
    • Persevere -- Persevere. , http://persvr.org/
  • 36
    • 84874649461 scopus 로고    scopus 로고
    • The National Center for Biomedical Ontology - BioPortal
    • The National Center for Biomedical Ontology - BioPortal. , http://www.bioontology.org/ncbo/faces/index.xhtml
  • 38
    • 0018220836 scopus 로고
    • Afferent Connections of the Entorhinal Area in the Rat as Demonstrated by Retrograde Cell-labeling with Horseradish Peroxidase
    • 10.1016/0006-8993(78)90254-8, 679029
    • Beckstead RM. Afferent Connections of the Entorhinal Area in the Rat as Demonstrated by Retrograde Cell-labeling with Horseradish Peroxidase. Brain Res 1978, 152(2):249-264. 10.1016/0006-8993(78)90254-8, 679029.
    • (1978) Brain Res , vol.152 , Issue.2 , pp. 249-264
    • Beckstead, R.M.1
  • 39
    • 0020521095 scopus 로고
    • Afferent Connections of the Perirhinal Cortex in the Rat
    • 10.1002/cne.902200205, 6643724
    • W DT, Eichenbaum H, Rosenberg P, Eckmann KW. Afferent Connections of the Perirhinal Cortex in the Rat. J Comp Neurol 1983, 220(2):168-190. 10.1002/cne.902200205, 6643724.
    • (1983) J Comp Neurol , vol.220 , Issue.2 , pp. 168-190
    • W, D.T.1    Eichenbaum, H.2    Rosenberg, P.3    Eckmann, K.W.4
  • 40
    • 0019407810 scopus 로고
    • A Direct Projection from Ammon's Horn to Prefrontal Cortex in the Rat
    • 10.1016/0006-8993(81)90192-X, 7260612
    • Swanson LW. A Direct Projection from Ammon's Horn to Prefrontal Cortex in the Rat. Brain Res 1981, 217:150-154. 10.1016/0006-8993(81)90192-X, 7260612.
    • (1981) Brain Res , vol.217 , pp. 150-154
    • Swanson, L.W.1
  • 41
    • 0019870755 scopus 로고
    • Evidence for Collateral Projections by Neurons in Ammon's Horn, the Dentate Gyrus, and the Subiculum: A Multiple Retrograde Labeling Study in the Rat
    • Swanson LW, Sawchenko PE, M CW. Evidence for Collateral Projections by Neurons in Ammon's Horn, the Dentate Gyrus, and the Subiculum: A Multiple Retrograde Labeling Study in the Rat. J Neurosci 1981, 1(5):548-559.
    • (1981) J Neurosci , vol.1 , Issue.5 , pp. 548-559
    • Swanson, L.W.1    Sawchenko, P.E.2    M, C.W.3
  • 42
    • 0025629907 scopus 로고
    • Extrinsic Projections from Area CA1 of the Rat Hippocampus: Olfactory, Cortical, Subcortical, and Bilateral Hippocampal Formation Projections
    • 10.1002/cne.903020308, 1702115
    • van Groen T, Wyss JM. Extrinsic Projections from Area CA1 of the Rat Hippocampus: Olfactory, Cortical, Subcortical, and Bilateral Hippocampal Formation Projections. J Comp Neurol 1990, 302(3):515-528. 10.1002/cne.903020308, 1702115.
    • (1990) J Comp Neurol , vol.302 , Issue.3 , pp. 515-528
    • van Groen, T.1    Wyss, J.M.2
  • 45
    • 77957300395 scopus 로고    scopus 로고
    • Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN
    • 10.1186/1745-7580-6-S1-S5, 2981881, 21067547
    • He Y, Xiang Z. Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN. Immunome Res 2010, 6(Suppl 1):S5. 10.1186/1745-7580-6-S1-S5, 2981881, 21067547., http://www.ncbi.nlm.nih.gov/pubmed?term=20875156
    • (2010) Immunome Res , vol.6 , Issue.SUPPL. 1
    • He, Y.1    Xiang, Z.2
  • 46
    • 33747884698 scopus 로고    scopus 로고
    • An ontology of scientific experiments
    • 10.1098/rsif.2006.0134, 1885356, 17015305
    • Soldatova LN, King RD. An ontology of scientific experiments. J R Soc Interface 2006, 3(11):795-803. 10.1098/rsif.2006.0134, 1885356, 17015305.
    • (2006) J R Soc Interface , vol.3 , Issue.11 , pp. 795-803
    • Soldatova, L.N.1    King, R.D.2
  • 49
    • 84888285290 scopus 로고    scopus 로고
    • Yogo:: Crux Experiment Management
    • Yogo:: Crux Experiment Management. , http://yogo.msu.montana.edu/applications/crux.html
  • 50
    • 77956528470 scopus 로고    scopus 로고
    • Utopia documents: linking scholarly literature with research data
    • 10.1093/bioinformatics/btq383, 2935404, 20823323
    • Attwood TK, Kell DB, McDermott P, Marsh J, Pettifer SR, Thorne D. Utopia documents: linking scholarly literature with research data. Bioinformatics 2010, 26(18):i568-i574. 10.1093/bioinformatics/btq383, 2935404, 20823323.
    • (2010) Bioinformatics , vol.26 , Issue.18
    • Attwood, T.K.1    Kell, D.B.2    McDermott, P.3    Marsh, J.4    Pettifer, S.R.5    Thorne, D.6
  • 51
  • 55
    • 59949087987 scopus 로고    scopus 로고
    • The design and realisation of the Virtual Research Environment for social sharing of workflows
    • De Roure D, Goble C, Stevens R. The design and realisation of the Virtual Research Environment for social sharing of workflows. Future Generation Computer Systems 2009, 25(5):561-567.
    • (2009) Future Generation Computer Systems , vol.25 , Issue.5 , pp. 561-567
    • De Roure, D.1    Goble, C.2    Stevens, R.3
  • 56
    • 33644769007 scopus 로고    scopus 로고
    • Biodynamic Ontology: Applying BFO in the Biomedical Domain
    • Amsterdam: IOS Press, Pisanelli DM
    • Grenon P, Smith B, Goldberg L. Biodynamic Ontology: Applying BFO in the Biomedical Domain. Ontologies in Medicine 2004, Amsterdam: IOS Press, Pisanelli DM.
    • (2004) Ontologies in Medicine
    • Grenon, P.1    Smith, B.2    Goldberg, L.3
  • 57
    • 71549160513 scopus 로고    scopus 로고
    • OWL 2 Web Ontology Language: Direct Semantics
    • [W3C Recommendation], W3C
    • W3C OWL 2 Web Ontology Language: Direct Semantics. 2009, [W3C Recommendation], W3C., http://www.w3.org/TR/owl2-direct-semantics/
    • (2009)
  • 58
    • 77957954432 scopus 로고    scopus 로고
    • OWL 2 Web Ontology Language: Primer
    • [W3C Recommendation], W3C
    • W3C OWL 2 Web Ontology Language: Primer. 2009, [W3C Recommendation], W3C., http://www.w3.org/TR/owl2-primer/
    • (2009)
  • 59
    • 73649104640 scopus 로고    scopus 로고
    • OWL 2 Web Ontology Language: Structural Specification and Functional-Style Syntax
    • [W3C Recommendation], W3C
    • W3C OWL 2 Web Ontology Language: Structural Specification and Functional-Style Syntax. 2009, [W3C Recommendation], W3C., http://www.w3.org/TR/owl2-syntax/
    • (2009)
  • 62
    • 0025958375 scopus 로고
    • Autonomic Responses and Efferent Pathways from the Insular Cortex in the Rat
    • 10.1002/cne.903030303, 2007654
    • Yasui Y, Breder CD, Saper CB, Cechetto DF. Autonomic Responses and Efferent Pathways from the Insular Cortex in the Rat. J Comp Neurol 1991, 303(3):355-374. 10.1002/cne.903030303, 2007654.
    • (1991) J Comp Neurol , vol.303 , Issue.3 , pp. 355-374
    • Yasui, Y.1    Breder, C.D.2    Saper, C.B.3    Cechetto, D.F.4
  • 64
    • 0014289622 scopus 로고
    • Evaluation of a radioautographic neuroanatomical tracing method
    • [0006-8993 (Print) Journal Article], 10.1016/0006-8993(68)90052-8, 5652724
    • Lasek R, Joseph BS, Whitlock DG. Evaluation of a radioautographic neuroanatomical tracing method. Brain Res 1968, 8(2):319-36. [0006-8993 (Print) Journal Article], 10.1016/0006-8993(68)90052-8, 5652724.
    • (1968) Brain Res , vol.8 , Issue.2 , pp. 319-336
    • Lasek, R.1    Joseph, B.S.2    Whitlock, D.G.3
  • 65
    • 0015231031 scopus 로고
    • Retrograde axonal transport of protein
    • 10.1016/0006-8993(71)90044-8, 4107258
    • Kristensson K, Olsson Y. Retrograde axonal transport of protein. Brain Res 1971, 29(2):363-5. 10.1016/0006-8993(71)90044-8, 4107258., http://www.ncbi.nlm.nih.gov/pubmed?term=4107258
    • (1971) Brain Res , vol.29 , Issue.2 , pp. 363-365
    • Kristensson, K.1    Olsson, Y.2
  • 66
    • 0021369741 scopus 로고
    • An anterograde neuroanatomical tracing method that shows the detailed morphology of neurons, their axons and terminals: immunohistochemical localization of an axonally transported plant lectin, Phaseolus vulgaris leucoagglutinin (PHA-L)
    • [0006-8993 Journal Article], 10.1016/0006-8993(84)90940-5, 6198041
    • Gerfen CR, Sawchenko PE. An anterograde neuroanatomical tracing method that shows the detailed morphology of neurons, their axons and terminals: immunohistochemical localization of an axonally transported plant lectin, Phaseolus vulgaris leucoagglutinin (PHA-L). Brain Res 1984, 290(2):219-38. [0006-8993 Journal Article], 10.1016/0006-8993(84)90940-5, 6198041.
    • (1984) Brain Res , vol.290 , Issue.2 , pp. 219-238
    • Gerfen, C.R.1    Sawchenko, P.E.2
  • 70
    • 0034335376 scopus 로고    scopus 로고
    • Current concepts in neuroanatomical tracing
    • 10.1016/S0301-0082(00)00019-8, 10856608
    • Kobbert C, Apps R, Bechmann I, Lanciego JL, Mey J, Thanos S. Current concepts in neuroanatomical tracing. Prog Neurobiol 2000, 62(4):327-51. 10.1016/S0301-0082(00)00019-8, 10856608.
    • (2000) Prog Neurobiol , vol.62 , Issue.4 , pp. 327-351
    • Kobbert, C.1    Apps, R.2    Bechmann, I.3    Lanciego, J.L.4    Mey, J.5    Thanos, S.6
  • 72
    • 79551516806 scopus 로고    scopus 로고
    • BAMS Neuroanatomical Ontology: Design and Implementation
    • Bota M, Swanson LW. BAMS Neuroanatomical Ontology: Design and Implementation. Front Neuroinformatics 2008, 2:2., http://www.ncbi.nlm.nih.gov/pubmed?term=18974794
    • (2008) Front Neuroinformatics , vol.2 , pp. 2
    • Bota, M.1    Swanson, L.W.2
  • 73
    • 0842283371 scopus 로고    scopus 로고
    • A reference ontology for biomedical informatics: the Foundational Model of Anatomy
    • 10.1016/j.jbi.2003.11.007, 14759820
    • Rosse C, Mejino JJL. A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J Biomed Inform 2003, 36(6):478-500. 10.1016/j.jbi.2003.11.007, 14759820.
    • (2003) J Biomed Inform , vol.36 , Issue.6 , pp. 478-500
    • Rosse, C.1    Mejino, J.J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.