ModeRNA server: An online tool for modeling RNA 3D structures

Bioinformatics

Volumn 27, Issue 17, 2011, Pages 2441-2442

  Rother, Magdalena ^a,b   Milanowska, Kaja ^a,b   Puton, Tomasz ^a,b   Jeleniewicz, Jaroslaw ^a   Rother, Kristian ^a,b   Bujnicki, Janusz M ^a,b  

^a ADAM MICKIEWICZ UNIVERSITY   (Poland)

^b INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; UNTRANSLATED RNA;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; INTERNET; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

INTERNET; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; RNA; RNA, UNTRANSLATED; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 80051921913     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr400     Document Type: Article

References (7)

1. Capriotti,E. and Marti-Renom,M.A. (2010) Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. BMC Bioinformatics, 11, 322.
2. Capriotti,E. et al. (2011) All-atom knowledge-based potential for RNA structure prediction and assessment. Bioinformatics, 27, 1086-1093.
3. Gardner,P.P. et al. (2009) Rfam: updates to the RNA families database. Nucleic Acids Res., 37, D136-D140.
4. Nawrocki,E.P. et al. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
5. Rognes,T. (2001) ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches. Nucleic Acids Res., 29, 1647-1652.
6. Rother,K. et al. (2011a) RNA and protein 3D structure modeling: similarities and differences. J. Mol. Model., [Epub ahead of print, doi: 10.1007/s00894-010-0951-x, accessed date January 22, 2011].
7. Rother,M. et al. (2011b) ModeRNA: a tool for comparative modeling of RNA 3D structure. Nucleic Acids Res., 39, 4007-4022.