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Volumn 27, Issue 17, 2011, Pages 2443-2445

NASP: A parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments

Author keywords

[No Author keywords available]

Indexed keywords

DNA; NUCLEOTIDE; RNA;

EID: 80051916204     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr417     Document Type: Article
Times cited : (7)

References (8)
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    • Considerations in the identification of functional RNAstructural elements in genomic alignments
    • Babak,T. et al., (2007) Considerations in the identification of functional RNAstructural elements in genomic alignments. BMC Bioinformatics, 8, 33.
    • (2007) BMC Bioinformatics , vol.8 , pp. 33
    • Babak, T.1
  • 2
    • 58249121729 scopus 로고    scopus 로고
    • RNAalifold: Improved consensus structure prediction for RNA alignments
    • Bernhart,S.H. et al. (2008) RNAalifold: Improved consensus structure prediction for RNA alignments. BMC Bioinformatics, 9, 474.
    • (2008) BMC Bioinformatics , vol.9 , pp. 474
    • Bernhart, S.H.1
  • 3
    • 13344262673 scopus 로고    scopus 로고
    • A comprehensive comparison of comparative RNA structure prediction approaches
    • Gardner,P. and Giegerich,R. (2004) A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics, 5, 140-157.
    • (2004) BMC Bioinformatics , vol.5 , pp. 140-157
    • Gardner, P.1    Giegerich, R.2
  • 4
    • 60149094002 scopus 로고    scopus 로고
    • Predictions of RNA secondary structure using generalized centroid estimators
    • Hamada,M. et al. (2009) Predictions of RNA secondary structure using generalized centroid estimators. Bioinformatics, 25 465-473.
    • (2009) Bioinformatics , vol.25 , pp. 465-473
    • Hamada, M.1
  • 5
    • 0043123155 scopus 로고    scopus 로고
    • Pfold: RNA secondary structure prediction using stochastic context-free grammars
    • Knudsen,B. and Hein,J. (2003) Pfold: RNA secondary structure prediction using stochastic context-free grammars. Nucleic Acids Res., 31, 3423-3428.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3423-3428
    • Knudsen, B.1    Hein, J.2
  • 6
    • 84934438960 scopus 로고    scopus 로고
    • UNAFold: software for nucleic acid folding and hybridization
    • Markham,N.R. and Zuker,M. (2008) UNAFold: software for nucleic acid folding and hybridization. Method Mol Bio., 453, 3-31.
    • (2008) Method Mol Bio. , vol.453 , pp. 3-31
    • Markham, N.R.1    Zuker, M.2
  • 7
    • 33646272409 scopus 로고    scopus 로고
    • Identification and classification of secondary structures in the human genome
    • Pedersen,J.S. et al. (2006) Identification and classification of secondary structures in the human genome. PLoS Comput. Bio., 2, e33.
    • (2006) PLoS Comput. Bio. , vol.2
    • Pedersen, J.S.1
  • 8
    • 4344619191 scopus 로고    scopus 로고
    • Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: implications for evolution and host persistence
    • Simmonds,P. et al. (2004) Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: implications for evolution and host persistence. RNA, 10, 1337-1351.
    • (2004) RNA , vol.10 , pp. 1337-1351
    • Simmonds, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.