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Journal of Chemical Physics

Volumn 135, Issue 6, 2011, Pages

A method for treating the passage of a charged hard sphere ion as it passes through a sharp dielectric boundary

(4) Boda, Dezsö a,b Henderson, Douglas b Eisenberg, Bob c Gillespie, Dirk c

a UNIVERSITY OF PANNONIA (Hungary)

b Brigham Young University (United States)

c RUSH UNIVERSITY MEDICAL CENTER (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHARGED HARD SPHERES; COMPUTATION METHODS; DIELECTRIC BOUNDARY; DIELECTRIC COEFFICIENT; DIELECTRIC INTERFACE; EFFECTIVE CHARGE; ELECTROLYTE SYSTEMS; HARD SPHERES; IMPLICIT SOLVENT MODEL; INDUCED CHARGES; INTERACTION ENERGIES; INTERPOLATION METHOD; POINT CHARGE; POLARIZATION CHARGES; PRIMITIVE MODEL;

COMPUTER SIMULATION; DIELECTRIC MATERIALS; ELECTROLYTES; INTERPOLATION; SPHERES;

IONS;

ION;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; PROCEDURES; STATIC ELECTRICITY;

COMPUTER SIMULATION; IONS; METHODS; MODELS, MOLECULAR; STATIC ELECTRICITY;

EID: 80051902503 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.3622857 Document Type: Article

Times cited : (18)

References (41)

1
- 0012719611
- 10.1139/v81-295
- T. Croxton, M. D. A., G. N. Patey, G. M. Torrie, and J. P. Valleau, Can. J. Chem. 59, 1998 (1981). 10.1139/v81-295
- (1981) Can. J. Chem. , vol.59 , pp. 1998
- Croxton, T.¹ M, D.A.² Patey, G.N.³ Torrie, G.M.⁴ Valleau, J.P.⁵

2
- 0001572415
- 10.1063/1.443541
- G. M. Torrie, J. P. Valleau, and G. N. Patey, J. Chem. Phys. 76, 4615 (1982). 10.1063/1.443541
- (1982) J. Chem. Phys. , vol.76 , pp. 4615
- Torrie, G.M.¹ Valleau, J.P.² Patey, G.N.³

3
- 0012650164
- 10.1063/1.447536
- G. M. Torrie, J. P. Valleau, and C. W. Outhwaite, J. Chem. Phys. 81, 6296 (1984). 10.1063/1.447536
- (1984) J. Chem. Phys. , vol.81 , pp. 6296
- Torrie, G.M.¹ Valleau, J.P.² Outhwaite, C.W.³

4
- 5544220738
- 10.1016/0022-0728(86)90257-3
- G. M. Torrie and J. P. Valleau, J. Electroanal. Chem. 206, 69 (1986). 10.1016/0022-0728(86)90257-3
- (1986) J. Electroanal. Chem. , vol.206 , pp. 69
- Torrie, G.M.¹ Valleau, J.P.²

5
- 0000938839
- 10.1016/0009-2614(86)80652-2
- D. Bratko, B. Jnsson, and H. Wennerstrm, Chem. Phys. Lett. 128, 449 (1986). 10.1016/0009-2614(86)80652-2
- (1986) Chem. Phys. Lett. , vol.128 , pp. 449
- Bratko, D.¹ Jnsson, B.² Wennerstrm, H.³

6
- 0343787826
- 10.1021/j100284a022
- P. Linse, J. Phys. Chem. 90, 6821 (1986). 10.1021/j100284a022
- (1986) J. Phys. Chem. , vol.90 , pp. 6821
- Linse, P.¹

7
- 0037461481
- 10.1063/1.1521935
- R. Messina, J. Chem. Phys. 117, 11062 (2002). 10.1063/1.1521935
- (2002) J. Chem. Phys. , vol.117 , pp. 11062
- Messina, R.¹

8
- 42749100087
- 10.1103/PhysRevE.69.046702
- D. Boda, D. Gillespie, W. Nonner, D. Henderson, and B. Eisenberg, Phys. Rev. E 69, 046702 (2004). 10.1103/PhysRevE.69.046702
- (2004) Phys. Rev. e , vol.69 , pp. 046702
- Boda, D.¹ Gillespie, D.² Nonner, W.³ Henderson, D.⁴ Eisenberg, B.⁵

9
- 31744434705
- Monte Carlo simulation of the electric double layer: Dielectric boundaries and the effects of induced charge
- DOI 10.1080/00268970500108668
- D. Henderson, D. Gillespie, T. Nagy, and D. Boda, Mol. Phys. 103, 2851 (2005). 10.1080/00268970500108668 (Pubitemid 43175259)
- (2005) Molecular Physics , vol.103 , Issue.21-23 SPEC. ISSUE , pp. 2851-2861
- Henderson, D.¹ Gillespie, D.² Nagy, T.³ Boda, D.⁴

10
- 26944443658
- Monte Carlo simulation of an inhomogeneous dielectric continuum model for B-DNA
- DOI 10.1039/b508393a
- S. Grandison, R. Penfold, and J.-M. Vanden-Broeck, Phys. Chem. Chem. Phys. 7, 3486 (2005). 10.1039/b508393a (Pubitemid 41482941)
- (2005) Physical Chemistry Chemical Physics , vol.7 , Issue.19 , pp. 3486-3495
- Grandison, S.¹ Penfold, R.² Vanden-Broeck, J.-M.³

11
- 33746275175
- The effect of protein dielectric coefficient on the ionic selectivity of a calcium channel
- DOI 10.1063/1.2212423
- D. Boda, M. Valisk, B. Eisenberg, W. Nonner, D. Henderson, and D. Gillespie, J. Chem. Phys. 125, 034901 (2006). 10.1063/1.2212423 (Pubitemid 44107163)
- (2006) Journal of Chemical Physics , vol.125 , Issue.3 , pp. 034901
- Boda, D.¹ Valisko, M.² Eisenberg, B.³ Nonner, W.⁴ Henderson, D.⁵ Gillespie, D.⁶

12
- 34247260951
- Combined effect of pore radius and protein dielectric coefficient on the selectivity of a calcium channel
- DOI 10.1103/PhysRevLett.98.168102
- D. Boda, M. Valisk, B. Eisenberg, W. Nonner, D. Henderson, and D. Gillespie, Phys. Rev. Lett. 98, 168102 (2007). 10.1103/PhysRevLett.98.168102 (Pubitemid 46609781)
- (2007) Physical Review Letters , vol.98 , Issue.16 , pp. 168102
- Boda, D.¹ Valisko, M.² Eisenberg, B.³ Nonner, W.⁴ Henderson, D.⁵ Gillespie, D.⁶

13
- 48049090295
- 10.1039/b803783c
- M. M. Hatlo and L. Lue, Soft Matter 4, 1582 (2008). 10.1039/b803783c
- (2008) Soft Matter , vol.4 , pp. 1582
- Hatlo, M.M.¹ Lue, L.²

14
- 66049090534
- 10.1085/jg200910211
- D. Boda, M. Valisk, D. Henderson, B. Eisenberg, D. Gillespie, and W. Nonner, J. Gen. Physiol. 133, 497 (2009). 10.1085/jgp.200910211
- (2009) J. Gen. Physiol. , vol.133 , pp. 497
- Boda, D.¹ Valisk, M.² Henderson, D.³ Eisenberg, B.⁴ Gillespie, D.⁵ Nonner, W.⁶

15
- 52349085462
- 10.1063/1.2971038
- J. Rei and P. Linse, J. Chem. Phys. 129, 114505 (2008). 10.1063/1.2971038
- (2008) J. Chem. Phys. , vol.129 , pp. 114505
- Rei, J.¹ Linse, P.²

16
- 73649119898
- 10.1063/1.3276279
- Z. Y. Wang and Y. Q. Ma, J. Chem. Phys. 131, 244715 (2009). 10.1063/1.3276279
- (2009) J. Chem. Phys. , vol.131 , pp. 244715
- Wang, Z.Y.¹ Ma, Y.Q.²

17
- 79951523753
- 10.1063/1.3532937
- D. Boda, J. Giri, D. Henderson, B. Eisenberg, and D. Gillespie, J. Chem. Phys. 134, 055102 (2011). 10.1063/1.3532937
- (2011) J. Chem. Phys. , vol.134 , pp. 055102
- Boda, D.¹ Giri, J.² Henderson, D.³ Eisenberg, B.⁴ Gillespie, D.⁵

18
- 15244344856
- Poisson-Nernst-Planck theory approach to the calculation of current through biological ion channels
- DOI 10.1109/TNB.2004.842495
- R. D. Coalson and M. G. Kurnikova, IEEE Trans. Nanobiosci. 4, 81 (2005). 10.1109/TNB.2004.842495 (Pubitemid 40384649)
- (2005) IEEE Transactions on Nanobioscience , vol.4 , Issue.1 , pp. 81-92
- Coalson, R.D.¹ Kurnikova, M.G.²

19
- 12344297727
- An accurate and efficient empirical approach for calculating the dielectric self-energy and ion-ion pair potential in continuum models of biological ion channels
- DOI 10.1021/jp047438w
- M. H. Cheng and R. D. Coalson, J. Phys. Chem. B 109, 488 (2005). 10.1021/jp047438w (Pubitemid 40120996)
- (2005) Journal of Physical Chemistry B , vol.109 , Issue.1 , pp. 488-498
- Cheng, M.H.¹ Coalson, R.D.²

20
- 0038101633
- 10.1016/S0006-3495(03)75091-7
- B. Corry, S. Kuyucak, and S.-H. Chung, Biophys. J. 84, 3594 (2003). 10.1016/S0006-3495(03)75091-7
- (2003) Biophys. J. , vol.84 , pp. 3594
- Corry, B.¹ Kuyucak, S.² Chung, S.-H.³

21
- 0038637798
- 10.1016/S0006-3495(03)70015-0
- T. Batu and S. Kuyucak, Biophys. J. 84, 2871 (2003). 10.1016/S0006- 3495(03)70015-0
- (2003) Biophys. J. , vol.84 , pp. 2871
- Batu, T.¹ Kuyucak, S.²

22
- 80051902093
- (DECHEMA, Frankfurt a.M.), Vol..
- J. Barthel, R. Buchner, and M. Mnsterer, DECHEMA Chemistry Data Series (DECHEMA, Frankfurt a.M., 1995), Vol. 12.
- (1995) DECHEMA Chemistry Data Series , vol.12
- Barthel, J.¹ Buchner, R.² Mnsterer, M.³

23
- 16444369971
- 10.1021/jp982977k
- R. Buchner, G. T. Hefter, and P. M. May, J. Phys. Chem. A 103, 1 (1999). 10.1021/jp982977k
- (1999) J. Phys. Chem. A , vol.103 , pp. 1
- Buchner, R.¹ Hefter, G.T.² May, P.M.³

24
- 0034516442
- Dynamic lattice Monte Carlo model of ion transport in inhomogeneous dielectric environments: Method and implementation
- DOI 10.1021/jp001282s
- P. Graf, A. Nitzan, M. G. Kurnikova, and R. D. Coalson, J. Phys. Chem. B 104, 12324 (2000). 10.1021/jp001282s (Pubitemid 32087817)
- (2000) Journal of Physical Chemistry B , vol.104 , Issue.51 , pp. 12324-12338
- Graf Peter¹ Nitzan Abraham² Kurnikova Maria, G.³ Coalson Rob, D.⁴

25
- 1342344804
- 10.1021/jp0355307
- P. Graf, M. G. Kurnikova, R. D. Coalson, and A. Nitzan, J. Phys. Chem. B 108, 2006 (2004). 10.1021/jp0355307
- (2004) J. Phys. Chem. B , vol.108 , pp. 2006
- Graf, P.¹ Kurnikova, M.G.² Coalson, R.D.³ Nitzan, A.⁴

26
- 0032708637
- 10.1016/S0006-3495(99)77087-6
- S.-H. Chung, T. W. Allen, M. Hoyles, and S. Kuyucak, Biophys. J. 77, 2517 (2001). 10.1016/S0006-3495(99)77087-6
- (2001) Biophys. J. , vol.77 , pp. 2517
- Chung, S.-H.¹ Allen, T.W.² Hoyles, M.³ Kuyucak, S.⁴

27
- 0035132981
- 10.1016/S0006-3495(01)76007-9
- B. Corry, T. W. Allen, S. Kuyucak, and S.-H. Chung, Biophys. J. 80, 195 (2001). 10.1016/S0006-3495(01)76007-9
- (2001) Biophys. J. , vol.80 , pp. 195
- Corry, B.¹ Allen, T.W.² Kuyucak, S.³ Chung, S.-H.⁴

28
- 12844277402
- A model of sodium channels
- DOI 10.1016/j.bbamem.2004.11.011, PII S0005273604002962
- T. Vora, B. Corry, and S.-H. Chung, Biochim. Biophys. Acta 1668, 106 (2005). 10.1016/j.bbamem.2004.11.011 (Pubitemid 40164738)
- (2005) Biochimica et Biophysica Acta - Biomembranes , vol.1668 , Issue.1 , pp. 106-116
- Vora, T.¹ Corry, B.² Chung, S.-H.³

29
- 3042835846
- Monte Carlo simulation study of a system With a dielectric boundary: Application to calcium channel selectivity
- DOI 10.1080/0892702031000152226
- D. Boda, T. Varga, D. Henderson, D. D. Busath, W. Nonner, D. Gillespie, and B. Eisenberg, Mol. Simul. 30, 89 (2004). 10.1080/0892702031000152226 (Pubitemid 40026330)
- (2004) Molecular Simulation , vol.30 , Issue.2-3 , pp. 89-96
- Boda, D.¹ Varga, T.² Henderson, D.³ Busath, D.D.⁴ Nonner, W.⁵ Gillespie, D.⁶ Eisenberg, B.⁷

30
- 36549099539
- 10.1063/1.448350
- R. Kjellander and S. Marelja, J. Chem. Phys. 82, 2122 (1985). 10.1063/1.448350
- (1985) J. Chem. Phys. , vol.82 , pp. 2122
- Kjellander, R.¹ Marelja, S.²

31
- 34249814641
- Dielectric saturation of the ion hydration shell and interaction between two double helices of DNA in mono- and multivalent electrolyte solutions: Foundations of the ε-modified poisson-boltzmann theory
- DOI 10.1021/jp067120z
- S. Gavryushov, J. Phys. Chem. B 111, 5264 (2007). 10.1021/jp067120z (Pubitemid 46854515)
- (2007) Journal of Physical Chemistry B , vol.111 , Issue.19 , pp. 5264-5276
- Gavryushov, S.¹

32
- 36549100321
- 10.1063/1.453343
- H. Hoshi, M. Sakurai, Y. Inoue, and R. Chj, J. Chem. Phys. 87, 1107 (1987). 10.1063/1.453343
- (1987) J. Chem. Phys. , vol.87 , pp. 1107
- Hoshi, H.¹ Sakurai, M.² Inoue, Y.³ Chj, R.⁴

33
- 84962460748
- 10.1103/PhysRevE.80.011906
- J. P. Bardhan, R. S. Eisenberg, and D. Gillespie, Phys. Rev. E 80, 011906 (2009). 10.1103/PhysRevE.80.011906
- (2009) Phys. Rev. e , vol.80 , pp. 011906
- Bardhan, J.P.¹ Eisenberg, R.S.² Gillespie, D.³

34
- 0035723018
- 10.1039/b105176h
- R. Allen, J. P. Hansen, and S. Melchionna, Phys. Chem. Chem. Phys. 3, 4177 (2001). 10.1039/b105176h
- (2001) Phys. Chem. Chem. Phys. , vol.3 , pp. 4177
- Allen, R.¹ Hansen, J.P.² Melchionna, S.³

35
- 0042705202
- 10.1021/jp030035w
- S. Gavryushov and P. Linse, J. Phys. Chem. B 107, 7135 (2003). 10.1021/jp030035w
- (2003) J. Phys. Chem. B , vol.107 , pp. 7135
- Gavryushov, S.¹ Linse, P.²

36
- 33847297469
- 10.1039/f19787401604
- M. H. Abraham and J. Liszi, J. Chem. Soc., Faraday Trans. I 74, 1604 (1978). 10.1039/f19787401604
- (1978) J. Chem. Soc., Faraday Trans. i , vol.74 , pp. 1604
- Abraham, M.H.¹ Liszi, J.²

37
- 33645484978
- 10.1039/f19807601219
- M. H. Abraham and J. Liszi, J. Chem. Soc., Faraday Trans. I 76, 1219 (1980). 10.1039/f19807601219
- (1980) J. Chem. Soc., Faraday Trans. i , vol.76 , pp. 1219
- Abraham, M.H.¹ Liszi, J.²

38
- 0034238998
- 10.1103/PhysRevE.62.2891
- J.-Q. Feng, Phys. Rev. E 62, 2891 (2000). 10.1103/PhysRevE.62.2891
- (2000) Phys. Rev. e , vol.62 , pp. 2891
- Feng, J.-Q.¹

39
- 34250928962
- 10.1007/BF01881023
- M. Born, Z. Phys. 1, 45 (1920). 10.1007/BF01881023
- (1920) Z. Phys. , vol.1 , pp. 45
- Born, M.¹

40
- 78049272342
- 10.1063/1.3489418
- J. Vincze, M. Valisk, and D. Boda, J. Chem. Phys. 133, 154507 (2010). 10.1063/1.3489418
- (2010) J. Chem. Phys. , vol.133 , pp. 154507
- Vincze, J.¹ Valisk, M.² Boda, D.³

41
- 54949135400
- 10.1063/1.2987409
- J. P. Bardhan, J. Chem. Phys. 129, 144105 (2008). 10.1063/1.2987409
- (2008) J. Chem. Phys. , vol.129 , pp. 144105
- Bardhan, J.P.¹

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