The probabilistic niche model reveals substantial variation in the niche structure of empirical food webs

Ecology

Volumn 92, Issue 9, 2011, Pages 1849-1857

  Williams, Richard J ^a   Purves, Drew W ^a  

^a MICROSOFT RESEARCH   (United Kingdom)

Author keywords

Ecological network; Food web; Hierarchy; Likelihood; Niche; Probabilistic model; Trophic structure

Indexed keywords

BODY SIZE; ECOSYSTEM FUNCTION; ECOSYSTEM RESILIENCE; EMPIRICAL ANALYSIS; FOOD WEB; HIERARCHICAL SYSTEM; NICHE PARTITIONING; PROBABILITY; TROPHIC STRUCTURE;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; FEEDING BEHAVIOR; FOOD CHAIN; PHYSIOLOGY; STATISTICAL MODEL;

ANIMALS; FEEDING BEHAVIOR; FOOD CHAIN; LIKELIHOOD FUNCTIONS; MODELS, BIOLOGICAL;

EID: 80051901927     PISSN: 00129658     EISSN: None     Source Type: Journal    
DOI: 10.1890/11-0200.1     Document Type: Article

References (45)

1. Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control. 19:716-723.
2. Allesina, S. 2010. Predicting trophic relations in ecological networks: a test of the Allometric Diet Breadth Model. Journal of Theoretical Biology. [doi: 10.1016/j.jtbi.2010.06. 04]
3. Allesina, S., D. Alonso, and M. Pascual. 2008. A general model for food web structure. Science 320:658-661. (Pubitemid 351928346)
4. Allesina, S., and M. Pascual. 2009. Food web models: a plea for groups. Ecology Letters 12:652-662.
5. Beninca, E., J. Huisman, R. Heerkloss, K. D. Johnk, P. Branco, E. H. Van Nes, M. Scheffer, and S. P. Ellner. 2008. Chaos in a long-term experiment with a plankton community. Nature 451:822-825. (Pubitemid 351253160)
6. Brose, U., R. J. Williams, and N. D. Martinez. 2006. Allometric scaling enhances stability in complex food webs. Ecology Letters 9:1228-1236. (Pubitemid 44571664)
7. Cardinale, B. J., J. E. Duffy, D. S. Srivastava, M. Loreau, M. Thomas, and M. Emmerson. 2009. Towards a food web perspective on biodiversity and ecosystem functioning. Pages 105-120 in S. Naeem, D. Bunker, A. Hector, M. Loreau, and C. Perrings, editors. Biodiversity, ecosystem functioning and human wellbeing. Oxford University Press, Oxford, UK.
8. Cattin, M.-F., L.-F. Bersier, C. Banasek-Richter, R. Baltensperger, and J.-P. Gabriel. 2004. Phylogenetic constraints and adaptation explain food-web structure. Nature 427:835-839. (Pubitemid 38297744)
9. Chase, J. M. 2000. Are there real differences among aquatic and terrestrial food webs? Trends in Ecology and Evolution 15:408-412.
10. Cohen, J. E. 1977. Food webs and dimensionality of trophic niche space. Proceedings of the National Academy of Sciences USA 74:4533-4536.
11. Cohen, J. E. 1978. Food webs and niche space. Princeton University Press, Princeton, New Jersey, USA.
12. Cohen, J. E., et al., editors. 1993. Improving food webs. Ecology 74:252-258.
13. Cohen, J. E., F. Briand, and C. M. Newman. 1990. Community food webs: data and theory. Springer, Berlin, Germany.
14. Cohen, J. E., and C. M. Newman. 1985. A stochastic theory of community food webs: I. models and aggregated data. Proceedings of the Royal Society B 224:421-448.
15. Drossel, B., A. J. McKane, and C. Quince. 2004. The impact of nonlinear functional responses on the long-term evolution of food web structure. Journal of Theoretical Biology 229:539-548. (Pubitemid 38891617)
16. Dunne, J. A. 2006. The network structure of food webs. Pages 27-86 in M. Pascual and J. A. Dunne, editors. Ecological networks: linking structure to dynamics in food webs. Oxford University Press, New York, New York, USA.
17. Dunne, J. A., R. J. Williams, and N. D. Martinez. 2002a. Foodweb structure and network theory: the role of connectance and size. Proceedings of the National Academy of Sciences USA 99:12917-12922.
18. Dunne, J. A., R. J. Williams, and N. D. Martinez. 2002b. Network structure and biodiversity loss in food webs: robustness increases with connectance. Ecology Letters 5:558-567. (Pubitemid 34824916)
19. Dunne, J. A., R. J. Williams, and N. D. Martinez. 2004. Network structure and robustness of marine food webs. Marine Ecology Progress Series 273:291-302. (Pubitemid 38889507)
20. Emmerson, M. C., and D. Raffaelli. 2004. Predator-prey body size, interaction strength and the stability of a real food web. Journal of Animal Ecology 73:399-409. (Pubitemid 38583737)
21. Hurvich, C. M., and C.-L. Tsai. 1989. Regression and time series model selection in small samples. Biometrika 76:297-307.
22. Hutchinson, G. E. 1959. Homage to Santa Rosalia or why are there so many kinds of animals? American Naturalist 93:145-159.
23. Kirkpatrick, S., C. D. Gelatt, and M. P. Vecchi. 1983. Optimization by simulated annealing. Science 220:671-680.
24. Loeuille, N., and M. Loreau. 2005. Evolutionary emergence of size-structured food webs. Proceedings of the National Academy of Science USA 102:5761-5766. (Pubitemid 40559633)
25. Loreau, M. 2009. Linking biodiversity and ecosystems: towards a unifying ecological theory. Philosophical Transactions of the Royal Society B 365:49-60.
26. May, R. M. 1972. Will a large complex system be stable? Nature 238:413-414.
27. May, R. M., S. A. Levin, and G. Sugihara. 2008. Complex systems: ecology for bankers. Nature 451:893-895. (Pubitemid 351301717)
28. Morton, R. D., R. Law, S. L. Pimm, and J. A. Drake. 1996. On models for assembling ecological communities. Oikos 75:493-499.
29. Neutel, A. M., J. A. P. Heesterbeek, and P. C. de Ruiter. 2002. Stability in real food webs: weak links in long loops. Science 296:1120-1123. (Pubitemid 34517129)
30. Petchey, O. L., A. P. Beckerman, J. O. Riede, and P. H. Warren. 2008. Size, foraging, and food web structure. Proceedings of the National Academy of Science USA 105:4191-4196. (Pubitemid 351754356)
31. Petchey, O. L., P. T. McPhearson, T. M. Casey, and P. J. Morin. 1999. Environmental warming alters food-web structure and ecosystem function. Nature 402:69-72.
32. Pimm, S. L., and J. H. Lawton. 1977. Number of trophic levels in ecological communities. Nature 268:329-331. (Pubitemid 8141995)
33. Pimm, S. L., and J. H. Lawton. 1978. Feeding on more than one trophic level. Nature 275:542-544. (Pubitemid 9020563)
34. Shurin, J. B., D. S. Gruner, and H. Hillebrand. 2006. All wet or dried up? Real differences between aquatic and terrestrial food webs. Proceedings of the Royal Society B 273:1-9. (Pubitemid 46768037)
35. Stouffer, D. B., J. Camacho, and L. A. N. Amaral. 2006. A robust measure of food web intervality. Proceedings of the National Academy of Science USA 103:19015-19020. (Pubitemid 350002820)
36. Stouffer, D. B., J. Camacho, W. Jiang, and L. A. N. Amaral. 2007. Evidence for the existence of a robust pattern of prey selection in food webs. Proceedings of the Royal Society B 274:1931-1940. (Pubitemid 47122192)
37. Sugiura, N. 1978. Further analysis of the data by Akaike's information criterion and the finite corrections. Communications in Statistics, Theory and Methods A7:13-26.
38. Thébault, E., and M. Loreau. 2003. Food-web constraints on biodiversity-ecosystem functioning relationships. Proceedings of the National Academy of Sciences USA 100:14949-14954. (Pubitemid 37517997)
39. Warren, P. H. 1996. Structural constraints on food web assembly. Pages 142-161 in M. E. Hochberg, J. Clobert, and R. Barbault, editors. Aspects of the genesis and maintenance of biological diversity. Oxford University Press, New York, New York, USA.
40. Williams, R. J., A. Anandanadesan, and D. Purves. 2010. The probabilistic niche model reveals the niche structure and role of body size in a complex food web. PLoS ONE 5:e12092.
41. Williams, R. J., and N. D. Martinez. 2000. Simple rules yield complex food webs. Nature 404:180-183. (Pubitemid 30154484)
42. Williams, R. J., and N. D. Martinez. 2008. Success and its limits among structural models of complex food webs. Journal of Animal Ecology 77:512-519. (Pubitemid 351537596)
43. Woodward, G., B. Ebenman, M. Emmerson, J. M. Montoya, J. M. Olesen, A. Valido, and P. H. Warren. 2005. Body size in ecological networks. Trends in Ecology and Evolution 20:402-409. (Pubitemid 40817320)
44. Yodzis, P. 1981. The stability of real ecosystems. Nature 289:674-676.
45. Zook, A. E., A. Eklof, U. Jacob, and S. Allesina. 2011. Food webs: ordering species according to body size yields high degree of intervality. Journal of Theoretical Biology 271:106-113.