Sex-specific dynamics of global chromatin changes in fetal mouse germ cells

PLoS ONE

Volumn 6, Issue 8, 2011, Pages

  Abe, Masanobu ^a,b   Tsai, Shirley Y ^a   Jin, Seung Gi ^a   Pfeifer, Gerd P ^a   Szabó, Piroska E ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

^b UNIVERSITY OF TOKYO HOSPITAL   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL BEHAVIOR; ANIMAL CELL; ARTICLE; CELL COMPOSITION; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; CONTROLLED STUDY; DNA METHYLATION; EPIGENETICS; FEMALE; FETUS; FETUS DEVELOPMENT; GERM CELL; GONAD; HISTONE MODIFICATION; MALE; MOLECULAR DYNAMICS; MOUSE; NONHUMAN; PROTEIN DOMAIN; SEX DETERMINATION PROCESS; SEX DIFFERENTIATION; SEXUAL INTERCOURSE; SOMATIC CELL; ANIMAL; ANIMAL EMBRYO; CHROMATIN; IMMUNOHISTOCHEMISTRY; METABOLISM; SEX DIFFERENCE; SPERMATOGENESIS;

MAMMALIA;

ANIMALS; CHROMATIN; DNA METHYLATION; EMBRYO, MAMMALIAN; FEMALE; GERM CELLS; IMMUNOHISTOCHEMISTRY; MALE; MICE; SEX FACTORS; SPERMATOGENESIS;

EID: 80051836007     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023848     Document Type: Article

References (40)

1. Reik W, Dean W, Walter J, (2001) Epigenetic reprogramming in mammalian development. Science 293: 1089-1093.
2. Sasaki H, Matsui Y, (2008) Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat Rev Genet 9: 129-140.
3. Reik W, (2007) Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 447: 425-432.
4. Hajkova P, Erhardt S, Lane N, Haaf T, El-Maarri O, et al. (2002) Epigenetic reprogramming in mouse primordial germ cells. Mech Dev 117: 15-23.
5. Monk M, Boubelik M, Lehnert S, (1987) Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development. Development 99: 371-382.
6. Hajkova P, Ancelin K, Waldmann T, Lacoste N, Lange UC, et al. (2008) Chromatin dynamics during epigenetic reprogramming in the mouse germ line. Nature 452: 877-881.
7. Daujat S, Weiss T, Mohn F, Lange UC, Ziegler-Birling C, et al. (2009) H3K64 trimethylation marks heterochromatin and is dynamically remodeled during developmental reprogramming. Nat Struct Mol Biol 16: 777-781.
8. Seki Y, Hayashi K, Itoh K, Mizugaki M, Saitou M, et al. (2005) Extensive and orderly reprogramming of genome-wide chromatin modifications associated with specification and early development of germ cells in mice. Dev Biol 278: 440-458.
9. Seki Y, Yamaji M, Yabuta Y, Sano M, Shigeta M, et al. (2007) Cellular dynamics associated with the genome-wide epigenetic reprogramming in migrating primordial germ cells in mice. Development 134: 2627-2638.
10. Yoshioka H, McCarrey JR, Yamazaki Y, (2009) Dynamic nuclear organization of constitutive heterochromatin during fetal male germ cell development in mice. Biol Reprod 80: 804-812.
11. Ferguson-Smith AC, (2011) Genomic imprinting: the emergence of an epigenetic paradigm. Nat Rev Genet 12: 565-575.
12. Reik W, Walter J, (2001) Genomic imprinting: parental influence on the genome. Nat Rev Genet 2: 21-32.
13. Szabó PE, Hubner K, Scholer H, Mann JR, (2002) Allele-specific expression of imprinted genes in mouse migratory primordial germ cells. Mech Dev 115: 157-160.
14. Szabó PE, Mann JR, (1995) Biallelic expression of imprinted genes in the mouse germ line: implications for erasure, establishment, and mechanisms of genomic imprinting. Genes Dev 9: 1857-1868.
15. Mann JR, Szabó PE, Reed MR, Singer-Sam J, (2000) Methylated DNA sequences in genomic imprinting. Crit Rev Eukaryot Gene Expr 10: 241-257.
16. Wutz A, Smrzka OW, Schweifer N, Schellander K, Wagner EF, et al. (1997) Imprinted expression of the Igf2r gene depends on an intronic CpG island. Nature 389: 745-749.
17. Thorvaldsen JL, Bartolomei MS, (2000) Molecular biology. Mothers setting boundaries. Science 288: 2145-2146.
18. Fitzpatrick GV, Soloway PD, Higgins MJ, (2002) Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1. Nat Genet 32: 426-431.
19. Ferguson-Smith A, Lin SP, Tsai CE, Youngson N, Tevendale M, (2003) Genomic imprinting-insights from studies in mice. Semin Cell Dev Biol 14: 43-49.
20. Williamson CM, Turner MD, Ball ST, Nottingham WT, Glenister P, et al. (2006) Identification of an imprinting control region affecting the expression of all transcripts in the Gnas cluster. Nat Genet 38: 350-355.
21. Sato S, Yoshimizu T, Sato E, Matsui Y, (2003) Erasure of methylation imprinting of Igf2r during mouse primordial germ-cell development. Mol Reprod Dev 65: 41-50.
22. Davis TL, Yang GJ, McCarrey JR, Bartolomei MS, (2000) The H19 methylation imprint is erased and re-established differentially on the parental alleles during male germ cell development. Hum Mol Genet 9: 2885-2894.
23. Ueda T, Abe K, Miura A, Yuzuriha M, Zubair M, et al. (2000) The paternal methylation imprint of the mouse H19 locus is acquired in the gonocyte stage during foetal testis development. Genes Cells 5: 649-659.
24. Lee DH, Singh P, Tsai SY, Oates N, Spalla A, et al. (2010) CTCF-dependent chromatin bias constitutes transient epigenetic memory of the mother at the H19-Igf2 imprinting control region in prospermatogonia. PLoS Genet 6: e1001224.
25. Kato Y, Kaneda M, Hata K, Kumaki K, Hisano M, et al. (2007) Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet 16: 2272-2280.
26. Kono T, Obata Y, Yoshimzu T, Nakahara T, Carroll J, (1996) Epigenetic modifications during oocyte growth correlates with extended parthenogenetic development in the mouse. Nat Genet 13: 91-94.
27. Obata Y, Kono T, (2002) Maternal primary imprinting is established at a specific time for each gene throughout oocyte growth. J Biol Chem 277: 5285-5289.
28. Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, et al. (2011) Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus. Science 332: 848-852.
29. Yoon BJ, Herman H, Sikora A, Smith LT, Plass C, et al. (2002) Regulation of DNA methylation of Rasgrf1. Nat Genet 30: 92-96.
30. Chotalia M, Smallwood SA, Ruf N, Dawson C, Lucifero D, et al. (2009) Transcription is required for establishment of germline methylation marks at imprinted genes. Genes Dev 23: 105-117.
31. Ciccone DN, Su H, Hevi S, Gay F, Lei H, et al. (2009) KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints. Nature 461: 415-418.
32. Cheng X, Blumenthal RM, Coordinated chromatin control: structural and functional linkage of DNA and histone methylation. Biochemistry 49: 2999-3008.
33. Lehnertz B, Ueda Y, Derijck AA, Braunschweig U, Perez-Burgos L, et al. (2003) Suv39h-mediated histone h3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin. Curr Biol 13: 1192-1200.
34. Chedin F, Lieber MR, Hsieh CL, (2002) The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a. Proc Natl Acad Sci U S A 99: 16916-16921.
35. Otani J, Nankumo T, Arita K, Inamoto S, Ariyoshi M, et al. (2009) Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain. EMBO Rep 10: 1235-1241.
36. Kaneda M, Okano M, Hata K, Sado T, Tsujimoto N, et al. (2004) Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting. Nature 429: 900-903.
37. Jones B, Su H, Bhat A, Lei H, Bajko J, et al. (2008) The histone H3K79 methyltransferase Dot1L is essential for mammalian development and heterochromatin structure. PLoS Genet 4: e1000190.
38. Singh P, Han L, Rivas GE, Lee DH, Nicholson TB, et al. (2010) Allele-specific H3K79 Di- versus trimethylation distinguishes opposite parental alleles at imprinted regions. Mol Cell Biol 30: 2693-2707.
39. Ooga M, Inoue A, Kageyama S, Akiyama T, Nagata M, et al. (2008) Changes in H3K79 methylation during preimplantation development in mice. Biol Reprod 78: 413-424.
40. Singh P, Wu X, Lee DH, Li AX, Rauch TA, et al. (2011) Chromosome-wide analysis of parental allele-specific chromatin and DNA methylation. Mol Cell Biol 31: 1757-1770.