메뉴 건너뛰기




Volumn 22, Issue 5-6, 2011, Pages 451-472

On some novel extended topochemical atom (ETA) parameters for effective encoding of chemical information and modelling of fundamental physicochemical properties

Author keywords

Computational; ETA; Physicochemical properties; QSPR; Topological indices

Indexed keywords

COMPUTATIONAL CHEMISTRY; MOLECULAR GRAPHICS; TOXICITY;

EID: 80051816061     PISSN: 1062936X     EISSN: 1029046X     Source Type: Journal    
DOI: 10.1080/1062936X.2011.569900     Document Type: Article
Times cited : (66)

References (47)
  • 1
    • 10044265608 scopus 로고    scopus 로고
    • The reduced graph descriptor in virtual screening and data-driven clustering of high throughput screening data
    • G. Harper, G.S. Bravi, S.D. Pickett, J. Hussain, and D.V.S. Green, The reduced graph descriptor in virtual screening and data-driven clustering of high throughput screening data, J. Chem. Inf. Comp. Sci. 44 (2004), pp. 2145-2156.
    • (2004) J. Chem. Inf. Comp. Sci , vol.44 , pp. 2145-2156
    • Harper, G.1    Bravi, G.S.2    Pickett, S.D.3    Hussain, J.4    Green, D.V.S.5
  • 2
    • 59149086030 scopus 로고    scopus 로고
    • Applications of 2D descriptors in drug design: A DRAGON tale
    • Sharjah, United Arab Emirates
    • A.M. Helguera, R.D. Combes, M.P. González, and M.N. Cordeiro, Applications of 2D descriptors in drug design: A DRAGON tale, Curr. Top. Med. Chem. (Sharjah, United Arab Emirates) 8 (2008), pp. 1628-1655.
    • (2008) Curr. Top. Med. Chem , vol.8 , pp. 1628-1655
    • Helguera, A.M.1    Combes, R.D.2    González, M.P.3    Cordeiro, M.N.4
  • 3
    • 0035986794 scopus 로고    scopus 로고
    • Application of topological descriptors in QSAR and drug design: History and new trends
    • R. Gozalbes, J.P. Doucet, and F. Derouin, Application of topological descriptors in QSAR and drug design: History and new trends, Curr. Drug Targets 2 (2002), pp. 93-102.
    • (2002) Curr. Drug Targets , vol.2 , pp. 93-102
    • Gozalbes, R.1    Doucet, J.P.2    Derouin, F.3
  • 4
    • 34447254270 scopus 로고    scopus 로고
    • Medicinal chemistry and bioinformatics: Current trends in drugs discovery with networks topological indices
    • Sharjah, United Arab Emirates
    • H. González-Díaz, S. Vilar, L. Santana, and E. Uriarte, Medicinal chemistry and bioinformatics: Current trends in drugs discovery with networks topological indices, Curr. Top. Med. Chem. (Sharjah, United Arab Emirates) 7 (2007), pp. 1015-1029.
    • (2007) Curr. Top. Med. Chem , vol.7 , pp. 1015-1029
    • González-Díaz, H.1    Vilar, S.2    Santana, L.3    Uriarte, E.4
  • 5
    • 77953301845 scopus 로고    scopus 로고
    • Review of MARCH-INSIDE and complex networks prediction of drugs: ADMET, anti-parasite activity, metabolizing enzymes and cardiotoxicity proteome biomarkers
    • H. González-Diaz, A. Duardo-Sanchez, F.M. Ubeira, F. Prado-Prado, L.G. Perez-Montoto, R. Concu, G. Podda, and B. Shen, Review of MARCH-INSIDE and complex networks prediction of drugs: ADMET, anti-parasite activity, metabolizing enzymes and cardiotoxicity proteome biomarkers, Curr. Drug Metab. 11 (2010), pp. 379-406.
    • (2010) Curr. Drug Metab , vol.11 , pp. 379-406
    • González-Diaz, H.1    Duardo-Sanchez, A.2    Ubeira, F.M.3    Prado-Prado, F.4    Perez-Montoto, L.G.5    Concu, R.6    Podda, G.7    Shen, B.8
  • 6
    • 59149084486 scopus 로고    scopus 로고
    • Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach
    • Sharjah, United Arab Emirates
    • H. González-Diaz, F. Prado-Prado, and F.M. Ubeira, Predicting antimicrobial drugs and targets with the MARCH-INSIDE approach, Curr. Top. Med. Chem. (Sharjah, United Arab Emirates) 8 (2008), pp. 1676-1690.
    • (2008) Curr. Top. Med. Chem , vol.8 , pp. 1676-1690
    • González-Diaz, H.1    Prado-Prado, F.2    Ubeira, F.M.3
  • 8
    • 67650914244 scopus 로고    scopus 로고
    • Predicting the vapour pressure of chemicals from structure: A comparison of graph theoretic versus quantum chemical descriptors
    • S.C. Basak and D. Mills, Predicting the vapour pressure of chemicals from structure: A comparison of graph theoretic versus quantum chemical descriptors, SAR QSAR Environ. Res. 20 (2009), pp. 119-132.
    • (2009) SAR QSAR Environ Res , vol.20 , pp. 119-132
    • Basak, S.C.1    Mills, D.2
  • 9
    • 44249117819 scopus 로고    scopus 로고
    • Predicting allergic contact dermatitis: A hierarchical structure-activity relationship (SAR) approach to chemical classification using topological and quantum chemical descriptors
    • S.C. Basak, D. Mills, and D.M. Hawkins, Predicting allergic contact dermatitis: A hierarchical structure-activity relationship (SAR) approach to chemical classification using topological and quantum chemical descriptors, J. Comput.-Aided Mol. Des. 22 (2008), pp. 339-343.
    • (2008) J. Comput.-Aided Mol. Des , vol.22 , pp. 339-343
    • Basak, S.C.1    Mills, D.2    Hawkins, D.M.3
  • 10
    • 0005215819 scopus 로고
    • A new topochemical descriptor (TAU) in molecular connectivity concept: Part I. Aliphatic compounds
    • D.K. Pal, C. Sengupta, and A.U. De, A new topochemical descriptor (TAU) in molecular connectivity concept: Part I. Aliphatic compounds, Indian J. Chem., Sect. B: Org. Chem. Incl. Med. Chem. 27 (1988), pp. 734-739.
    • (1988) Indian J. Chem., Sect. B: Org. Chem. Incl. Med. Chem , vol.27 , pp. 734-739
    • Pal, D.K.1    Sengupta, C.2    De, A.U.3
  • 11
    • 0024322978 scopus 로고
    • Introduction of a novel topochemical index and exploitation of group connectivity concept to achieve predictability in QSAR and RDD
    • D.K. Pal, C. Sengupta, and A.U. De, Introduction of a novel topochemical index and exploitation of group connectivity concept to achieve predictability in QSAR and RDD, Indian J. Chem., Sect. B: Org. Chem. Incl. Med. Chem 28 (1989), pp. 261-267.
    • (1989) Indian J. Chem., Sect. B: Org. Chem. Incl. Med. Chem , vol.28 , pp. 261-267
    • Pal, D.K.1    Sengupta, C.2    De, A.U.3
  • 12
    • 1842778639 scopus 로고    scopus 로고
    • Introduction of extended topochemical atom (ETA) indices in the valence electron mobile (VEM) environment as tools for QSAR/QSPR studies
    • K. Roy and G. Ghosh, Introduction of extended topochemical atom (ETA) indices in the valence electron mobile (VEM) environment as tools for QSAR/QSPR studies, Internet Electronic Journal of Molecular Design 2 (2003), pp. 599-620.
    • (2003) Internet Electronic Journal of Molecular Design , vol.2 , pp. 599-620
    • Roy, K.1    Ghosh, G.2
  • 13
    • 1842740163 scopus 로고    scopus 로고
    • Introduction of extended topochemical atom (ETA) Indices in the valence electron mobile (VEM) environment as tools for QSAR/QSPR studies QSTR with extended topochemical atom indices. 2. Fish toxicity of substituted benzenes
    • K. Roy and G. Ghosh, Introduction of extended topochemical atom (ETA) Indices in the valence electron mobile (VEM) environment as tools for QSAR/QSPR studies QSTR with extended topochemical atom indices. 2. Fish toxicity of substituted benzenes, J. Chem. Inf. Comp. Sci. 44 (2004), pp. 559-567.
    • (2004) J. Chem. Inf. Comp. Sci , vol.44 , pp. 559-567
    • Roy, K.1    Ghosh, G.2
  • 14
    • 4744367493 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom indices: 3. Toxicity of nitrobenzenes to Tetrahymena pyriformis
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom indices: 3. Toxicity of nitrobenzenes to Tetrahymena pyriformis, QSAR Comb. Sci. 23 (2004), pp. 99-108.
    • (2004) QSAR Comb. Sci , vol.23 , pp. 99-108
    • Roy, K.1    Ghosh, G.2
  • 15
    • 4744372184 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom indices: 4. Modeling of the acute toxicity of phenylsulfonyl carboxylates to Vibrio fischeri using principal component factor analysis and principal component regression analysis
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom indices: 4. Modeling of the acute toxicity of phenylsulfonyl carboxylates to Vibrio fischeri using principal component factor analysis and principal component regression analysis, QSAR Comb. Sci. 23 (2004), pp. 526-535.
    • (2004) QSAR Comb. Sci , vol.23 , pp. 526-535
    • Roy, K.1    Ghosh, G.2
  • 16
    • 12844253788 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom indices: Part 5. Modeling of the acute toxicity of phenylsulfonyl carboxylates to Vibrio fischeri using genetic function approximation
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom indices: Part 5. Modeling of the acute toxicity of phenylsulfonyl carboxylates to Vibrio fischeri using genetic function approximation, Bioorg. Med. Chem. 13 (2005), pp. 1185-1194.
    • (2005) Bioorg. Med. Chem , vol.13 , pp. 1185-1194
    • Roy, K.1    Ghosh, G.2
  • 17
    • 33644772718 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: VI. Acute toxicity of benzene derivatives to tadpoles (Rana japonica)
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom (ETA) indices: VI. Acute toxicity of benzene derivatives to tadpoles (Rana japonica), J. Mol. Model. 12 (2006), pp. 306-316.
    • (2006) J. Mol. Model , vol.12 , pp. 306-316
    • Roy, K.1    Ghosh, G.2
  • 18
    • 33646271362 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom indices: 7. QSAR of substituted benzenes to Saccharomyces cerevisiae
    • K. Roy and I. Sanyal, QSTR with extended topochemical atom indices: 7. QSAR of substituted benzenes to Saccharomyces cerevisiae, QSAR Comb. Sci. 25 (2006), pp. 359-371.
    • (2006) QSAR Comb. Sci , vol.25 , pp. 359-371
    • Roy, K.1    Sanyal, I.2
  • 19
    • 33750412371 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: 8. QSAR for the inhibition of substituted phenols on germination rate of Cucumis sativus using chemometric tools
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom (ETA) indices: 8. QSAR for the inhibition of substituted phenols on germination rate of Cucumis sativus using chemometric tools, QSAR Comb. Sci. 25 (2006), pp. 846-859.
    • (2006) QSAR Comb. Sci , vol.25 , pp. 846-859
    • Roy, K.1    Ghosh, G.2
  • 20
    • 35549005726 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: 9. Comparative QSAR for the toxicity of diverse functional organic compounds to Chlorella vulgaris using hemometric tools
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom (ETA) indices: 9. Comparative QSAR for the toxicity of diverse functional organic compounds to Chlorella vulgaris using hemometric tools, Chemosphere 70 (2007), pp. 1-12.
    • (2007) Chemosphere , vol.70 , pp. 1-12
    • Roy, K.1    Ghosh, G.2
  • 21
    • 54249167492 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom indices: 10. Modeling of toxicity of organic chemicals to humans using different chemometric tools
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom indices: 10. Modeling of toxicity of organic chemicals to humans using different chemometric tools, Chem. Biol. Drug Des. 72 (2008), pp. 383-394.
    • (2008) Chem. Biol. Drug Des , vol.72 , pp. 383-394
    • Roy, K.1    Ghosh, G.2
  • 22
    • 70449100468 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: 11. Comparative QSAR of acute NSAID cytotoxicity in rat hepatocytes using chemometric tools
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom (ETA) indices: 11. Comparative QSAR of acute NSAID cytotoxicity in rat hepatocytes using chemometric tools, Mol. Simul. 35 (2009), pp. 648-659.
    • (2009) Mol. Simul , vol.35 , pp. 648-659
    • Roy, K.1    Ghosh, G.2
  • 23
    • 71749119934 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: 12. QSAR for the toxicity of diverse aromatic compounds to Tetrahymena pyriformis using chemometric tools
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom (ETA) indices: 12. QSAR for the toxicity of diverse aromatic compounds to Tetrahymena pyriformis using chemometric tools, Chemosphere 77 (2009), pp. 999-1009.
    • (2009) Chemosphere , vol.77 , pp. 999-1009
    • Roy, K.1    Ghosh, G.2
  • 24
    • 70449134150 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: 13. Modeling of hERG K{thorn} channel blocking activity of diverse functional drugs using different chemometric tools
    • K. Roy and G. Ghosh, QSTR with extended topochemical atom (ETA) indices: 13. Modeling of hERG K{thorn} channel blocking activity of diverse functional drugs using different chemometric tools, Mol. Simul. 15 (2009), pp. 1256-1268.
    • (2009) Mol. Simul , vol.15 , pp. 1256-1268
    • Roy, K.1    Ghosh, G.2
  • 25
    • 77956438713 scopus 로고    scopus 로고
    • QSTR with extended topochemical atom (ETA) indices: 14. QSAR modeling of toxicity of aromatic aldehydes to Tetrahymena pyriformis
    • K. Roy and R.N. Das, QSTR with extended topochemical atom (ETA) indices: 14. QSAR modeling of toxicity of aromatic aldehydes to Tetrahymena pyriformis, J. Hazard. Mater. 183 (2010), pp. 913-922.
    • (2010) J. Hazard. Mater , vol.183 , pp. 913-922
    • Roy, K.1    Das, R.N.2
  • 26
    • 33845429166 scopus 로고    scopus 로고
    • QSPR of the bioconcentration factors of nonionic organic compounds in fish using extended topochemical atom (ETA) indices
    • K. Roy, I. Sanyal, and P.P. Roy, QSPR of the bioconcentration factors of nonionic organic compounds in fish using extended topochemical atom (ETA) indices, SAR QSAR Environ. Res. 17 (2006), pp. 563-582.
    • (2006) SAR QSAR Environ Res , vol.17 , pp. 563-582
    • Roy, K.1    Sanyal, I.2    Roy, P.P.3
  • 27
    • 34250640145 scopus 로고    scopus 로고
    • QSPR of n-octanol/water partition coefficient of nonionic organic compounds using extended topochemical atom (ETA) indices
    • K. Roy, I. Sanyal, and G. Ghosh, QSPR of n-octanol/water partition coefficient of nonionic organic compounds using extended topochemical atom (ETA) indices, QSAR Comb. Sci. 25 (2006), pp. 629-646.
    • (2006) QSAR Comb. Sci , vol.25 , pp. 629-646
    • Roy, K.1    Sanyal, I.2    Ghosh, G.3
  • 28
    • 77957967208 scopus 로고    scopus 로고
    • Exploring QSARs with extended topochemical atom (ETA) indices for modeling chemical and drug toxicity
    • K. Roy and G. Ghosh, Exploring QSARs with extended topochemical atom (ETA) indices for modeling chemical and drug toxicity, Curr. Pharm. Des. 16 (2010), pp. 2625-2639.
    • (2010) Curr. Pharm. Des , vol.16 , pp. 2625-2639
    • Roy, K.1    Ghosh, G.2
  • 29
    • 85195105002 scopus 로고    scopus 로고
    • DRAGON version 6 software is offered by TELETE SRL, Italy, last accessed November 30, 2010
    • DRAGON version 6 software is offered by TELETE SRL, Italy, Available from http://www.talete.mi.it/products/dragon_description.htm (last accessed November 30, 2010).
  • 30
    • 0033955479 scopus 로고    scopus 로고
    • Prediction of aqueous solubility in drug design
    • J. Taskinen, Prediction of aqueous solubility in drug design, Curr. Opin. Drug Discovery Dev. 3 (2000), pp. 102-107.
    • (2000) Curr. Opin. Drug Discovery Dev , vol.3 , pp. 102-107
    • Taskinen, J.1
  • 31
    • 8644243613 scopus 로고
    • Partition coefficients and their uses
    • A. Leo, C. Hansch, and D. Elkins, Partition coefficients and their uses, Chem. Rev. 71 (1971), pp. 525-616.
    • (1971) Chem. Rev , vol.71 , pp. 525-616
    • Leo, A.1    Hansch, C.2    Elkins, D.3
  • 32
    • 0001085722 scopus 로고
    • The linear free-energy relationship between partition coefficients and the aqueous solubility of organic liquids
    • C. Hansch, J.E. Quinlan, and G.L. Lawrence, The linear free-energy relationship between partition coefficients and the aqueous solubility of organic liquids, J. Org. Chem. 33 (1968), pp. 347-350.
    • (1968) J. Org. Chem , vol.33 , pp. 347-350
    • Hansch, C.1    Quinlan, J.E.2    Lawrence, G.L.3
  • 33
    • 0000422818 scopus 로고
    • Optimal characterization of structure for prediction of properties
    • S.C. Basak, G.J. Neimi, and G.D. Veith, Optimal characterization of structure for prediction of properties, J. Math. Chem. 4 (1990), pp. 185-205.
    • (1990) J. Math. Chem , vol.4 , pp. 185-205
    • Basak, S.C.1    Neimi, G.J.2    Veith, G.D.3
  • 39
    • 37349048522 scopus 로고    scopus 로고
    • On some aspects of validation of predictive quantitative structure-activity relationship models
    • K. Roy, On some aspects of validation of predictive quantitative structure-activity relationship models, Expert Opin. Drug Dis. 2 (2007), pp. 1567-1577.
    • (2007) Expert Opin. Drug Dis , vol.2 , pp. 1567-1577
    • Roy, K.1
  • 40
    • 67249129284 scopus 로고    scopus 로고
    • On two novel parameters for validation of predictive QSAR models
    • P.P. Roy, S. Paul, I. Mitra, and K. Roy, On two novel parameters for validation of predictive QSAR models, Molecules 14 (2009), pp. 1660-1701.
    • (2009) Molecules , vol.14 , pp. 1660-1701
    • Roy, P.P.1    Paul, S.2    Mitra, I.3    Roy, K.4
  • 41
    • 74349118668 scopus 로고    scopus 로고
    • On further application of r2 m as a metric for validation of QSAR models
    • I. Mitra, P.P. Roy, S. Kar, P.K. Ojha, and K. Roy, On further application of r2 m as a metric for validation of QSAR models, J. Chemom. 24 (2010), pp. 22-33.
    • (2010) J. Chemom , vol.24 , pp. 22-33
    • Mitra, I.1    Roy, P.P.2    Kar, S.3    Ojha, P.K.4    Roy, K.5
  • 42
    • 41949116226 scopus 로고    scopus 로고
    • On some aspects of variable selection for partial least squares regression models
    • P.P. Roy and K. Roy, On some aspects of variable selection for partial least squares regression models, QSAR Comb. Sci. 27 (2008), pp. 302-313.
    • (2008) QSAR Comb. Sci , vol.27 , pp. 302-313
    • Roy, P.P.1    Roy, K.2
  • 43
    • 85195096737 scopus 로고    scopus 로고
    • Cerius 2 version 4.10 software is offered by Accelrys Inc., USA, last accessed December 2, 2010
    • Cerius 2 version 4.10 software is offered by Accelrys Inc., USA, 2005, http://www.accelrys.com (last accessed December 2, 2010).
    • (2005)
  • 44
    • 0043132440 scopus 로고    scopus 로고
    • Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs
    • L. Eriksson, J. Jaworska, A.P. Worth, M.T. Cronin, R.M. McDowell, and P. Gramatica, Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs, Environ. Health Persp. 111 (2003), pp. 1361-1375.
    • (2003) Environ. Health Persp , vol.111 , pp. 1361-1375
    • Eriksson, L.1    Jaworska, J.2    Worth, A.P.3    Cronin, M.T.4    McDowell, R.M.5    Gramatica, P.6
  • 45
    • 1842804636 scopus 로고    scopus 로고
    • Comparative QSPR Studies with Molecular Connectivity, Molecular Negentropy and TAU Indices: Part 2. Lipid-water partition coefficient of diverse functional acyclic compounds, Internet Electron
    • K. Roy and A. Saha, Comparative QSPR Studies with Molecular Connectivity, Molecular Negentropy and TAU Indices: Part 2. Lipid-water partition coefficient of diverse functional acyclic compounds, Internet Electron. J. Mol. Des. 2 (2003), pp. 288-305,http://www.biochempress.com
    • (2003) J. Mol. Des , vol.2 , pp. 288-305
    • Roy, K.1    Saha, A.2
  • 46
    • 1842728122 scopus 로고    scopus 로고
    • QSPR with TAU indices: Water solubility of diverse functional acyclic compounds
    • K. Roy and A. Saha, QSPR with TAU indices: water solubility of diverse functional acyclic compounds, Internet Electronic Journal of Molecular Design 2 (2003), pp. 475-491; http://www.biochempress.com
    • (2003) Internet Electronic Journal of Molecular Design , vol.2 , pp. 475-491
    • Roy, K.1    Saha, A.2
  • 47
    • 28244444832 scopus 로고    scopus 로고
    • QSPR with TAU indices: Molar refractivity of diverse functional acyclic compounds
    • K. Roy and A. Saha, QSPR with TAU indices: Molar refractivity of diverse functional acyclic compounds, Indian J. Chem., Sect. B: Org. Chem. Incl. Med. Chem. 44 (2005), pp. 1693-1707.
    • (2005) Indian J. Chem., Sect. B: Org. Chem. Incl. Med. Chem , vol.44 , pp. 1693-1707
    • Roy, K.1    Saha, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.