-
2
-
-
0015012370
-
Isolation and Characterization of a Glucosamine-Requiring Mutant of Escherichia coli K-12 Defective in Glucosamine-6-Phosphate Synthetase
-
Wu, H. C. and Wu, T. C. (1971) Isolation and Characterization of a Glucosamine-Requiring Mutant of Escherichia coli K-12 Defective in Glucosamine-6-Phosphate Synthetase J. Bacteriol. 105, 455-466
-
(1971)
J. Bacteriol.
, vol.105
, pp. 455-466
-
-
Wu, H.C.1
Wu, T.C.2
-
3
-
-
0015010536
-
Mutant of Escherichia coli K-12 Defective in D-Glucosamine Biosynthesis
-
Sarvas, M. (1971) Mutant of Escherichia coli K-12 Defective in D-Glucosamine Biosynthesis J. Bacteriol. 105, 467-471
-
(1971)
J. Bacteriol.
, vol.105
, pp. 467-471
-
-
Sarvas, M.1
-
4
-
-
0014752615
-
Growth, Sporulation, and Enzyme Defects of Glucosamine Mutants of Bacillus subtilis
-
Freese, E. B., Cole, R. M., Klofat, W., and Freese, E. (1970) Growth, Sporulation, and Enzyme Defects of Glucosamine Mutants of Bacillus subtilis J. Bacteriol. 101, 1046-1062
-
(1970)
J. Bacteriol.
, vol.101
, pp. 1046-1062
-
-
Freese, E.B.1
Cole, R.M.2
Klofat, W.3
Freese, E.4
-
5
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
DOI 10.1038/nature02362
-
Winkler, W. C., Nahvi, A., Roth, A., Collins, J. A., and Breaker, R. R. (2004) Control of gene expression by a natural metabolite-responsive ribozyme Nature 428, 281-286 (Pubitemid 38418792)
-
(2004)
Nature
, vol.428
, Issue.6980
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
6
-
-
37249040135
-
Mechanism of mRNA destabilization by the glmS ribozyme
-
DOI 10.1101/gad.1605307
-
Collins, J. A., Irnov, I., Baker, S., and Winkler, W. C. (2007) Mechanism of mRNA destabilization by the glmS ribozyme Genes Dev. 21, 3356-3368 (Pubitemid 350277761)
-
(2007)
Genes and Development
, vol.21
, Issue.24
, pp. 3356-3368
-
-
Collins, J.A.1
Irnov, I.2
Baker, S.3
Winkler, W.C.4
-
7
-
-
27744525243
-
Ligand requirements for glmS ribozyme self-cleavage
-
DOI 10.1016/j.chembiol.2005.09.006, PII S1074552105002954
-
McCarthy, T. J., Plog, M. A., Floy, S. A., Jansen, J. A., Soukup, J. K., and Soukup, G. A. (2005) Ligand requirements for glmS ribozyme self-cleavage Chem. Biol. 12, 1221-1226 (Pubitemid 41628257)
-
(2005)
Chemistry and Biology
, vol.12
, Issue.11
, pp. 1221-1226
-
-
McCarthy, T.J.1
Plog, M.A.2
Floy, S.A.3
Jansen, J.A.4
Soukup, J.K.5
Soukup, G.A.6
-
8
-
-
33846279049
-
Structural Investigation of the GlmS Ribozyme Bound to Its Catalytic Cofactor
-
DOI 10.1016/j.chembiol.2006.12.005, PII S1074552106004601
-
Cochrane, J. C., Lipchock, S. V., and Strobel, S. A. (2007) Structural investigation of the GlmS ribozyme bound to its catalytic cofactor Chem. Biol. 14, 97-105 (Pubitemid 46124067)
-
(2007)
Chemistry and Biology
, vol.14
, Issue.1
, pp. 97-105
-
-
Cochrane, J.C.1
Lipchock, S.V.2
Strobel, S.A.3
-
9
-
-
65249184394
-
Structural and Chemical Basis for Glucosamine 6-Phosphate Binding and Activation of the glmS Ribozyme
-
Cochrane, J. C., Lipchock, S. V., Smith, K. D., and Strobel, S. A. (2009) Structural and Chemical Basis for Glucosamine 6-Phosphate Binding and Activation of the glmS Ribozyme Biochemistry 48, 3239-3246
-
(2009)
Biochemistry
, vol.48
, pp. 3239-3246
-
-
Cochrane, J.C.1
Lipchock, S.V.2
Smith, K.D.3
Strobel, S.A.4
-
10
-
-
34548591567
-
Requirement of Helix P2.2 and Nucleotide G1 for Positioning the Cleavage Site and Cofactor of the glmS Ribozyme
-
DOI 10.1016/j.jmb.2007.07.062, PII S0022283607010285
-
Klein, D. J., Wilkinson, S. R., Been, M. D., and Ferré- D'Amaré, A. R. (2007) Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J. Mol. Biol. 373, 178-189 (Pubitemid 47390720)
-
(2007)
Journal of Molecular Biology
, vol.373
, Issue.1
, pp. 178-189
-
-
Klein, D.J.1
Wilkinson, S.R.2
Been, M.D.3
Ferre-D'Amare, A.R.4
-
11
-
-
33746920364
-
Evidence for preorganization of the glmS ribozyme ligand binding pocket
-
DOI 10.1021/bi060337z
-
Hampel, K. J. and Tinsley, M. M. (2006) Evidence for Preorganization of the glmS Ribozyme Ligand Binding Pocket Biochemistry 45, 7861-7871 (Pubitemid 44185503)
-
(2006)
Biochemistry
, vol.45
, Issue.25
, pp. 7861-7871
-
-
Hampel, K.J.1
Tinsley, M.M.2
-
12
-
-
0342443835
-
Anomeric Equilibria in Derivatives of Amino Sugars. Some 2-Amino-2-deoxy-D-hexose Derivatives1 - 3
-
Horton, D., Jewell, J. S., and Philips, K. D. (1966) Anomeric Equilibria in Derivatives of Amino Sugars. Some 2-Amino-2-deoxy-D-hexose Derivatives1 - 3 J. Org. Chem. 31, 4022-4025
-
(1966)
J. Org. Chem.
, vol.31
, pp. 4022-4025
-
-
Horton, D.1
Jewell, J.S.2
Philips, K.D.3
-
13
-
-
33750149294
-
Characteristics of ligand recognition by a glmS self-cleaving ribozyme
-
DOI 10.1002/anie.200602534
-
Lim, J., Grove, B. C., Roth, A., and Breaker, R. R. (2006) Characteristics of Ligand Recognition by aglmS Self-Cleaving Ribozyme Angew. Chem., Int. Ed. 45, 6689-6693 (Pubitemid 44600444)
-
(2006)
Angewandte Chemie - International Edition
, vol.45
, Issue.40
, pp. 6689-6693
-
-
Lim, J.1
Grove, B.C.2
Roth, A.3
Breaker, R.R.4
-
14
-
-
78751487465
-
Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid - Base catalysis? A critical assessment of available experimental data
-
Wilson, T. J. and Lilley, D. M. J. (2011) Do the hairpin and VS ribozymes share a common catalytic mechanism based on general acid - base catalysis? A critical assessment of available experimental data RNA 17, 213-221
-
(2011)
RNA
, vol.17
, pp. 213-221
-
-
Wilson, T.J.1
Lilley, D.M.J.2
-
15
-
-
34249098371
-
A guanine nucleobase important for catalysis by the VS ribozyme
-
DOI 10.1038/sj.emboj.7601698, PII 7601698
-
Wilson, T. J., McLeod, A. C., and Lilley, D. M. J. (2007) A guanine nucleobase important for catalysis by the VS ribozyme EMBO J. 26, 2489-2500 (Pubitemid 46788324)
-
(2007)
EMBO Journal
, vol.26
, Issue.10
, pp. 2489-2500
-
-
Wilson, T.J.1
McLeod, A.C.2
Lilley, D.M.J.3
-
16
-
-
0037418547
-
Mechanistic considerations for general acid-base catalysis by RNA: Revisiting the mechanism of the hairpin ribozyme
-
DOI 10.1021/bi027273m
-
Bevilacqua, P. C. (2003) Mechanistic Considerations for General Acid - Base Catalysis by RNA: Revisiting the Mechanism of the Hairpin Ribozyme Biochemistry 42, 2259-2265 (Pubitemid 36255199)
-
(2003)
Biochemistry
, vol.42
, Issue.8
, pp. 2259-2265
-
-
Bevilacqua, P.C.1
-
17
-
-
51649103765
-
Catalytic Strategies of Self-Cleaving Ribozymes
-
Cochrane, J. C. and Strobel, S. A. (2008) Catalytic Strategies of Self-Cleaving Ribozymes Acc. Chem. Res. 41, 1027-1035
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 1027-1035
-
-
Cochrane, J.C.1
Strobel, S.A.2
-
18
-
-
33746228126
-
Tertiary Contacts Distant from the Active Site Prime a Ribozyme for Catalysis
-
DOI 10.1016/j.cell.2006.06.036, PII S0092867406008567
-
Martick, M. and Scott, W. G. (2006) Tertiary Contacts Distant from the Active Site Prime a Ribozyme for Catalysis Cell 126, 309-320 (Pubitemid 44092962)
-
(2006)
Cell
, vol.126
, Issue.2
, pp. 309-320
-
-
Martick, M.1
Scott, W.G.2
-
19
-
-
19644391548
-
Model for general acid-base catalysis by the hammerhead ribozyme: PH-activity relationships of G8 and G12 variants at the putative active site
-
DOI 10.1021/bi047941z
-
Han, J. and Burke, J. M. (2005) Model for General Acid - Base Catalysis by the Hammerhead Ribozyme: pH - Activity Relationships of G8 and G12 Variants at the Putative Active Site Biochemistry 44, 7864-7870 (Pubitemid 40740769)
-
(2005)
Biochemistry
, vol.44
, Issue.21
, pp. 7864-7870
-
-
Han, J.1
Burke, J.M.2
-
20
-
-
0004757060
-
-
University of California, San Francisco.
-
Goddard, T. D. and Kneller, D. G. Sparky 3, University of California, San Francisco.
-
Sparky
, vol.3
-
-
Goddard, T.D.1
Kneller, D.G.2
-
21
-
-
0043184607
-
Quantitative determination of magnetization exchange rate constants from a series of two-dimensional exchange NMR spectra
-
Zolnai, Z., Juranic, N., Vikic-Topic, D., and Macura, S. (2000) Quantitative determination of magnetization exchange rate constants from a series of two-dimensional exchange NMR spectra J. Chem. Inf. Comput. Sci. 40, 611-621
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, pp. 611-621
-
-
Zolnai, Z.1
Juranic, N.2
Vikic-Topic, D.3
MacUra, S.4
-
22
-
-
33748513667
-
Nuclear magnetic resonance spectroscopic studies of pyridine methyl derivatives binding to cytochrome c
-
Lu, J., Ma, D., Hu, J., Tang, W., and Zhu, D. (1998) Nuclear magnetic resonance spectroscopic studies of pyridine methyl derivatives binding to cytochrome c J. Chem. Soc., Dalton Trans. 2267-2274
-
(1998)
J. Chem. Soc., Dalton Trans.
, pp. 2267-2274
-
-
Lu, J.1
Ma, D.2
Hu, J.3
Tang, W.4
Zhu, D.5
-
23
-
-
0001304511
-
Application of two-dimensional NMR to kinetics of chemical exchange
-
Perrin, C. L. and Dwyer, T. J. (1990) Application of two-dimensional NMR to kinetics of chemical exchange Chem. Rev. 90, 935-967
-
(1990)
Chem. Rev.
, vol.90
, pp. 935-967
-
-
Perrin, C.L.1
Dwyer, T.J.2
-
24
-
-
0033789206
-
Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water
-
Dalvit, C., Pevarello, P., Tatò, M., Veronesi, M., Vulpetti, A., and Sundstroim, M. (2000) Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water J. Biomol. NMR 18, 65-68
-
(2000)
J. Biomol. NMR
, vol.18
, pp. 65-68
-
-
Dalvit, C.1
Pevarello, P.2
Tatò, M.3
Veronesi, M.4
Vulpetti, A.5
Sundstroim, M.6
-
25
-
-
0032480810
-
Calorimetric investigation of proton linkage by monitoring both the enthalpy and association constant of binding: Application to the interaction of the Src SH2 domain with a high-affinity tyrosyl phosphopeptide
-
DOI 10.1021/bi9814991
-
Bradshaw, J. M. and Waksman, G. (1998) Calorimetric Investigation of Proton Linkage by Monitoring both the Enthalpy and Association Constant of Binding: Application to the Interaction of the Src SH2 Domain with a High-Affinity Tyrosyl Phosphopeptide Biochemistry 37, 15400-15407 (Pubitemid 28516001)
-
(1998)
Biochemistry
, vol.37
, Issue.44
, pp. 15400-15407
-
-
Bradshaw, J.M.1
Waksman, G.2
-
26
-
-
0033019834
-
The mechanism of sugar phosphate isomerization by glucosamine 6-phosphate synthase
-
Teplyakov, A., Obmolova, G., Badet-Denisot, M.-A., and Badet, B. (2008) The mechanism of sugar phosphate isomerization by glucosamine 6-phosphate synthase Protein Sci. 8, 596-602
-
(2008)
Protein Sci.
, vol.8
, pp. 596-602
-
-
Teplyakov, A.1
Obmolova, G.2
Badet-Denisot, M.-A.3
Badet, B.4
-
27
-
-
0014930919
-
Anomalous mutarotation of glucose 6-phosphate. An example of intramolecular catalysis
-
Bailey, J. M., Fishman, P. H., and Pentchev, P. G. (1970) Anomalous mutarotation of glucose 6-phosphate. An example of intramolecular catalysis Biochemistry 9, 1189-1194
-
(1970)
Biochemistry
, vol.9
, pp. 1189-1194
-
-
Bailey, J.M.1
Fishman, P.H.2
Pentchev, P.G.3
-
28
-
-
12244311518
-
Dissociation constants of 2-amino-2-deoxy-D-glucopyranose
-
Neuberger, A. and Fletcher, A. P. (1969) Dissociation constants of 2-amino-2-deoxy-D-glucopyranose J. Chem. Soc. B 178-181
-
(1969)
J. Chem. Soc.
, pp. 178-181
-
-
Neuberger, A.1
Fletcher, A.P.2
-
29
-
-
77954332068
-
Protonation States of the Key Active Site Residues and Structural Dynamics of the glmS Riboswitch As Revealed by Molecular Dynamics
-
Banáš, P., Walter, N. G., Sponer, J., and Otyepka, M. (2010) Protonation States of the Key Active Site Residues and Structural Dynamics of the glmS Riboswitch As Revealed by Molecular Dynamics J. Phys. Chem. B 114, 8701-8712
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 8701-8712
-
-
Banási, P.1
Walter, N.G.2
Sponer, J.3
Otyepka, M.4
-
30
-
-
78649640602
-
Deciphering the role of glucosamine-6-phosphate in the riboswitch action of glmS ribozyme
-
Xin, Y. and Hamelberg, D. (2010) Deciphering the role of glucosamine-6-phosphate in the riboswitch action of glmS ribozyme RNA 16, 2455-2463
-
(2010)
RNA
, vol.16
, pp. 2455-2463
-
-
Xin, Y.1
Hamelberg, D.2
-
31
-
-
0003448576
-
-
3 rd ed. Royal Society of Chemistry, Cambridge, UK.
-
Blackburn, G. M., Gait, M. J., Loakes, D., and Williams, D. M. (2006) Nucleic Acids in Chemistry and Biology, 3 rd ed., Royal Society of Chemistry, Cambridge, UK.
-
(2006)
Nucleic Acids in Chemistry and Biology
-
-
Blackburn, G.M.1
Gait, M.J.2
Loakes, D.3
Williams, D.M.4
-
32
-
-
35848964370
-
a near neutrality for the catalytic cytosine in the genomic HDV ribozyme using raman crystallography
-
DOI 10.1021/ja0743893
-
Gong, B., Chen, J.-H., Chase, E., Chadalavada, D. M., Yajima, R., Golden, B. L., Bevilacqua, P. C., and Carey, P. R. (2007) Direct Measurement of a pKa near Neutrality for the Catalytic Cytosine in the Genomic HDV Ribozyme Using Raman Crystallography J. Am. Chem. Soc. 129, 13335-13342 (Pubitemid 350058377)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.43
, pp. 13335-13342
-
-
Gong, B.1
Chen, J.-H.2
Chase, E.3
Chadalavada, D.M.4
Yajima, R.5
Golden, B.L.6
Bevilacqua, P.C.7
Carey, P.R.8
-
33
-
-
0025210083
-
Solution conformation of an RNA hairpin loop
-
Puglisi, J. D., Wyatt, J. R., and Tinoco, I. (1990) Solution conformation of an RNA hairpin loop Biochemistry 29, 4215-4226 (Pubitemid 20145660)
-
(1990)
Biochemistry
, vol.29
, Issue.17
, pp. 4215-4226
-
-
Puglisi, J.D.1
Wyatt, J.R.2
Tinoco Jr., I.3
-
34
-
-
0035812381
-
a measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme
-
DOI 10.1021/ja016091x
-
Lupták, A., Ferré-D'Amaré, A. R., Zhou, K., Zilm, K. W., and Doudna, J. A. (2001) Direct pKa Measurement of the Active-Site Cytosine in a Genomic Hepatitis Delta Virus Ribozyme J. Am. Chem. Soc. 123, 8447-8452 (Pubitemid 32808069)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.35
, pp. 8447-8452
-
-
Luptak, A.1
Ferre-D'Amare, A.R.2
Zhou, K.3
Zilm, K.W.4
Doudna, J.A.5
-
35
-
-
0029869856
-
Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite
-
DOI 10.1021/bi952985g
-
Cai, Z. and Tinoco, I. (1996) Solution Structure of Loop A from the Hairpin Ribozyme from Tobacco Ringspot Virus Satellite Biochemistry 35, 6026-6036 (Pubitemid 26147574)
-
(1996)
Biochemistry
, vol.35
, Issue.19
, pp. 6026-6036
-
-
Cai, Z.1
Tinoco Jr., I.2
-
36
-
-
0034719109
-
Adenine protonation in domain B of the hairpin ribozyme
-
DOI 10.1021/bi001976r
-
Ravindranathan, S., Butcher, S. E., and Feigon, J. (2000) Adenine Protonation in Domain B of the Hairpin Ribozyme Biochemistry 39, 16026-16032 (Pubitemid 32038265)
-
(2000)
Biochemistry
, vol.39
, Issue.51
, pp. 16026-16032
-
-
Ravindranathan, S.1
Butcher, S.E.2
Feigon, J.3
-
37
-
-
70349095576
-
Direct Raman Measurement of an Elevated Base pKa in the Active Site of a Small Ribozyme in a Precatalytic Conformation
-
Guo, M., Spitale, R. C., Volpini, R., Krucinska, J., Cristalli, G., Carey, P. R., and Wedekind, J. E. (2009) Direct Raman Measurement of an Elevated Base pKa in the Active Site of a Small Ribozyme in a Precatalytic Conformation J. Am. Chem. Soc. 131, 12908-12909
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 12908-12909
-
-
Guo, M.1
Spitale, R.C.2
Volpini, R.3
Krucinska, J.4
Cristalli, G.5
Carey, P.R.6
Wedekind, J.E.7
-
38
-
-
0035848837
-
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis
-
DOI 10.1038/35071009
-
Rupert, P. B. and Ferre-D'Amare, A. R. (2001) Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis Nature 410, 780-786 (Pubitemid 32303769)
-
(2001)
Nature
, vol.410
, Issue.6830
, pp. 780-786
-
-
Rupert, P.B.1
Ferre-D'Amare, A.R.2
-
39
-
-
33644916691
-
Acid - Base properties of the nucleic-acid model 2'-deoxyguanylyl(5'3')- 2'-deoxy-5'-guanylate, d(pGpG)3 - , and of related guanine derivatives
-
Knobloch, B., Sigel, H., Okruszek, A., and Sigel, R. K. O. (2006) Acid - base properties of the nucleic-acid model 2'-deoxyguanylyl(5'3')-2'-deoxy-5'- guanylate, d(pGpG)3 - , and of related guanine derivatives Org. Biomol. Chem. 4, 1085
-
(2006)
Org. Biomol. Chem.
, vol.4
, pp. 1085
-
-
Knobloch, B.1
Sigel, H.2
Okruszek, A.3
Sigel, R.K.O.4
-
40
-
-
67349198163
-
Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme
-
Liu, L., Cottrell, J. W., Scott, L. G., and Fedor, M. J. (2009) Direct measurement of the ionization state of an essential guanine in the hairpin ribozyme Nat. Chem. Biol. 5, 351-357
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 351-357
-
-
Liu, L.1
Cottrell, J.W.2
Scott, L.G.3
Fedor, M.J.4
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