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Volumn 19, Issue 4, 2011, Pages 345-355

Revealing ensemble state transition patterns in multi-electrode neuronal recordings using hidden Markov models

Author keywords

Cultured neuronal networks; hidden Markov models; multi channel recordings; neuronal state transitions

Indexed keywords

COMPUTATIONAL CAPACITY; CULTURED NEURONAL NETWORKS; MESOSCOPIC SCALE; MULTI-CHANNEL RECORDINGS; MULTI-CHANNEL SPIKE TRAIN; MULTI-ELECTRODE; NEURONAL ACTIVITIES; NEURONAL DYNAMICS; OPTIMAL CHOICE; SPATIOTEMPORAL PATTERNS; STATE TRANSITIONS;

EID: 80051735795     PISSN: 15344320     EISSN: None     Source Type: Journal    
DOI: 10.1109/TNSRE.2011.2157360     Document Type: Article
Times cited : (14)

References (41)
  • 2
    • 33645712860 scopus 로고    scopus 로고
    • Single neurons can induce phase transitions of cortical recurrent networks with multiple internal states
    • S. Fujisawa, N. Matsuki, and Y. Ikegaya, "Single neurons can induce phase transitions of cortical recurrent networks with multiple internal states," Cereb. Cortex, vol. 16, no. 5, pp. 639-654, 2006.
    • (2006) Cereb. Cortex , vol.16 , Issue.5 , pp. 639-654
    • Fujisawa, S.1    Matsuki, N.2    Ikegaya, Y.3
  • 3
    • 18344410210 scopus 로고    scopus 로고
    • Neural ensemble states in prefrontal cortex identified using a hidden Markov model with a modified EM algorithm
    • DOI 10.1016/S0925-2312(00)00266-6, PII S0925231200002666
    • G. Rainer and E. K. Miller, "Neural ensemble states in prefrontal cortex identified using a hidden Markov model with a modified EM algorithm," Neurocomputing, vol. 32-33, pp. 961-966, 2000. (Pubitemid 30459817)
    • (2000) Neurocomputing , vol.32-33 , pp. 961-966
    • Rainer, G.1    Miller, E.K.2
  • 4
    • 0030044359 scopus 로고    scopus 로고
    • Simultaneously recorded single units in the frontal cortex go through sequences of discrete and stable states in monkeys performing a delayed localization task
    • E. Seidemann, I. Meilijson, M. Abeles, H. Bergman, and E. Vaadia, "Simultaneously recorded single units in the frontal cortex go through sequences of discrete and stable states in monkeys performing a delayed localization task," J. Neurosci., vol. 16, no. 2, pp. 752-768, 1996. (Pubitemid 26028834)
    • (1996) Journal of Neuroscience , vol.16 , Issue.2 , pp. 752-768
    • Seidemann, E.1    Meilijson, I.2    Abeles, M.3    Bergman, H.4    Vaadia, E.5
  • 6
    • 41349086424 scopus 로고    scopus 로고
    • Morphological characterization of in vitro neuronal networks
    • (5pp)
    • O. Shefi, I. Golding, R. Segev, E. Ben-Jacob, and A. Ayali, "Morphological characterization of in vitro neuronal networks," Phys. Rev. E, vol. 66, no. 2, p. 21905 (5pp), 2002.
    • (2002) Phys. Rev. E , vol.66 , Issue.2 , pp. 21905
    • Shefi, O.1    Golding, I.2    Segev, R.3    Ben-Jacob, E.4    Ayali, A.5
  • 7
    • 77749258217 scopus 로고    scopus 로고
    • The effect of slow electrical stimuli to achieve learning in cultured networks of rat cortical neurons
    • (8pp)
    • J. L. Feber, J. Stegenga, and W. L. C. Rutten, "The effect of slow electrical stimuli to achieve learning in cultured networks of rat cortical neurons," PLoS One, vol. 5, no. 1, p. E8871 (8pp), 2010.
    • (2010) PLoS One , vol.5 , Issue.1
    • Feber, J.L.1    Stegenga, J.2    Rutten, W.L.C.3
  • 8
    • 54049111907 scopus 로고    scopus 로고
    • Network plasticity in cortical assemblies
    • M. Chiappalone, P. Massobrio, and S. Martinoia, "Network plasticity in cortical assemblies," Eur. J. Neurosci, vol. 28, no. 1, pp. 221-237, 2008.
    • (2008) Eur. J. Neurosci , vol.28 , Issue.1 , pp. 221-237
    • Chiappalone, M.1    Massobrio, P.2    Martinoia, S.3
  • 9
    • 34548101734 scopus 로고    scopus 로고
    • Initial results from the use of learning classifier systems to control in vitro neuronal networks
    • DOI 10.1145/1276958.1277036, Proceedings of GECCO 2007: Genetic and Evolutionary Computation Conference
    • L. Bull and I. S. Uroukov, "Initial results from the use of learning classifier systems to control in vitro neuronal networks," in Proc. GECCO'07 ACM, 2007, pp. 369-376. (Pubitemid 47291545)
    • (2007) Proceedings of GECCO 2007: Genetic and Evolutionary Computation Conference , pp. 369-376
    • Bull, L.1    Uroukov, I.S.2
  • 10
    • 33745454023 scopus 로고    scopus 로고
    • Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development
    • DOI 10.1016/j.brainres.2006.03.049, PII S0006899306008018
    • M. Chiappalone, M. Bove, A. Vato, M. Tedesco, and S. Martinoia, "Dissociated cortical networks show spontaneously correlated activity patterns during," Vitro Development, Brain Res., vol. 1093, no. 1, pp. 41-53, 2006. (Pubitemid 43949574)
    • (2006) Brain Research , vol.1093 , Issue.1 , pp. 41-53
    • Chiappalone, M.1    Bove, M.2    Vato, A.3    Tedesco, M.4    Martinoia, S.5
  • 11
    • 0035889981 scopus 로고    scopus 로고
    • Learning in networks of cortical neurons
    • G. Shahaf and S. Marom, "Learning in networks of cortical neurons," J. Neurosci., vol. 21, no. 22, pp. 8782-8788, 2001. (Pubitemid 33054842)
    • (2001) Journal of Neuroscience , vol.21 , Issue.22 , pp. 8782-8788
    • Shahaf, G.1    Marom, S.2
  • 12
    • 0032987930 scopus 로고    scopus 로고
    • Simultaneous induction of pathway-specific potentiation and depression in networks of cortical neurons
    • Y. Jimbo, T. Tateno, and H. P. C. Robinson, "Simultaneous induction of pathway-specific potentiation and depression in networks of cortical neurons," Biophys. J., vol. 76, no. 2, pp. 670-678, 1999. (Pubitemid 29264550)
    • (1999) Biophysical Journal , vol.76 , Issue.2 , pp. 670-678
    • Jimbo, Y.1    Tateno, T.2    Robinson, H.P.C.3
  • 13
    • 0035506782 scopus 로고    scopus 로고
    • The neurally controlled animat: Biological brains acting with simulated bodies
    • DOI 10.1023/A:1012407611130
    • T. B. DeMarse, D. A. Wagenaar, A. W. Blau, and S. M. Potter, "The neurally controlled Animat: Biological brains acting with simulated bodies," Auton. Robot., vol. 11, no. 3, pp. 305-310, 2001. (Pubitemid 33109979)
    • (2001) Autonomous Robots , vol.11 , Issue.3 , pp. 305-310
    • DeMarse, T.B.1    Wagenaar, D.A.2    Blau, A.W.3    Potter, S.M.4
  • 15
    • 53249117350 scopus 로고    scopus 로고
    • Spatio-temporal electrical stimuli shape behavior of an embodied cortical network in a goal-directed learning task
    • D. J. Bakkum, Z. C. Chao, and S. M. Potter, "Spatio-temporal electrical stimuli shape behavior of an embodied cortical network in a goal-directed learning task," J. Neural Eng., vol. 5, pp. 310-323, 2008.
    • (2008) J. Neural Eng. , vol.5 , pp. 310-323
    • Bakkum, D.J.1    Chao, Z.C.2    Potter, S.M.3
  • 16
    • 45849146164 scopus 로고    scopus 로고
    • Low-frequency stimulation induces stable transitions in stereotypical activity in cortical networks
    • I. Vajda, J. van Pelt, P. Wolters, M. Chiappalone, S. Martinoia, E. van Someren, and A. van Ooyen, "Low-frequency stimulation induces stable transitions in stereotypical activity in cortical networks," Biophys. J., vol. 94, no. 12, pp. 5028-5039, 2008.
    • (2008) Biophys. J. , vol.94 , Issue.12 , pp. 5028-5039
    • Vajda, I.1    Van Pelt, J.2    Wolters, P.3    Chiappalone, M.4    Martinoia, S.5    Van Someren, E.6    Van Ooyen, A.7
  • 17
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • L. R. Rabiner, "A tutorial on hidden Markov models and selected applications in speech recognition," Proc. IEEE, vol. 77, no. 2, pp. 257-286, 1989.
    • (1989) Proc. IEEE , vol.77 , Issue.2 , pp. 257-286
    • Rabiner, L.R.1
  • 18
    • 78649239161 scopus 로고    scopus 로고
    • Modeling carbachol-induced hippocampal network synchronization using hidden Markov models
    • (10pp)
    • A. Dragomir, Y.M. Akay, and M. Akay, "Modeling carbachol-induced hippocampal network synchronization using hidden Markov models," J. Neural Eng., vol. 7, no. 5, p. 056012 (10pp), 2010.
    • (2010) J. Neural Eng. , vol.7 , Issue.5 , pp. 056012
    • Dragomir, A.1    Y.M. Akay2    Akay, M.3
  • 20
    • 0025716139 scopus 로고
    • Characterization of single channel currents using digital signal processing techniques based on hidden Markov models
    • S. H. Chung, J. B. Moore, L. Xia, L. S. Premkumar, and P. W. Gage, "Characterization of single channel currents using digital signal processing techniques based on hidden Markov models," in Philos. Trans. R. Soc. B-Biol. Sci., 1990, pp. 265-285.
    • (1990) Philos. Trans. R. Soc. B-Biol. Sci. , pp. 265-285
    • Chung, S.H.1    Moore, J.B.2    Xia, L.3    Premkumar, L.S.4    Gage, P.W.5
  • 21
    • 78650842701 scopus 로고    scopus 로고
    • Spatio-temporal clustering of firing rates for neural state estimation
    • Buenos Aires, Argentina
    • A. J. Brockmeier, I. Park, B. Mahmoudi, J. C. Sanchez, and J. C. Principe, "Spatio-temporal clustering of firing rates for neural state estimation," in Proc. 32nd IEEE EMBS Conf., Buenos Aires, Argentina, 2010, pp. 6023-6026.
    • (2010) Proc. 32nd IEEE EMBS Conf. , pp. 6023-6026
    • Brockmeier, A.J.1    Park, I.2    Mahmoudi, B.3    Sanchez, J.C.4    Principe, J.C.5
  • 22
    • 80051733187 scopus 로고    scopus 로고
    • Spatial-temporal clustering of neural data using linked-mixtures of hidden Markov models
    • S. Darmanjian and J. Principe, "Spatial-temporal clustering of neural data using linked-mixtures of hidden Markov models," in EURASIP J. Adv. Signal Process., 2009, vol. 2009, p. 16.
    • (2009) EURASIP J. Adv. Signal Process. , vol.2009 , pp. 16
    • Darmanjian, S.1    Principe, J.2
  • 23
    • 57149085744 scopus 로고    scopus 로고
    • Detecting neural-state transitions using hidden Markov models for motor cortical prostheses
    • C. Kemere, G. Santhanam, B. M. Yu, A. Afshar, S. I. Ryu, T. H. Meng, and K. V. Shenoy, "Detecting neural-state transitions using hidden Markov models for motor cortical prostheses," J. Neurophysiol., vol. 100, no. 4, pp. 2441-2452, 2008.
    • (2008) J. Neurophysiol. , vol.100 , Issue.4 , pp. 2441-2452
    • Kemere, C.1    Santhanam, G.2    Yu, B.M.3    Afshar, A.4    Ryu, S.I.5    Meng, T.H.6    Shenoy, K.V.7
  • 24
    • 0029489038 scopus 로고
    • Real-time American Sign Language recognition from video using hidden Markov models
    • T. Starner and A. Pentland, "Real-time American Sign Language recognition from video using hidden Markov models," in Proc. IEEE Int. Symp. Comp. Vis., 1995, pp. 265-270.
    • (1995) Proc. IEEE Int. Symp. Comp. Vis. , pp. 265-270
    • Starner, T.1    Pentland, A.2
  • 25
    • 0034604368 scopus 로고    scopus 로고
    • HMMSTR:AHidden Markov model for local sequence-structure correlations in proteins
    • Aug.
    • C. Bystroff, V. Thorsson, and D. Baker, "HMMSTR:AHidden Markov model for local sequence-structure correlations in proteins," J. Mol. Biol, vol. 301, no. 1, pp. 173-190, Aug. 2000.
    • (2000) J. Mol. Biol , vol.301 , Issue.1 , pp. 173-190
    • Bystroff, C.1    Thorsson, V.2    Baker, D.3
  • 26
    • 78049471688 scopus 로고    scopus 로고
    • Identifying seismicity levels via Poisson hidden Markov models
    • K. Orfanogiannaki, D. Karlis, and G. Papadopoulos, "Identifying seismicity levels via Poisson hidden Markov models," Pure Appl. Geophys., vol. 167, no. 8-9, pp. 919-931, 2010.
    • (2010) Pure Appl. Geophys. , vol.167 , Issue.8-9 , pp. 919-931
    • Orfanogiannaki, K.1    Karlis, D.2    Papadopoulos, G.3
  • 27
    • 33645337367 scopus 로고    scopus 로고
    • An extremely rich repertoire of bursting patterns during the development of cortical cultures
    • D. A.Wagenaar, J. Pine, and S. M. Potter, "An extremely rich repertoire of bursting patterns during the development of cortical cultures," BMC Neurosci., vol. 7, no. 1, p. 11, 2006.
    • (2006) BMC Neurosci. , vol.7 , Issue.1 , pp. 11
    • Wagenaar, D.A.1    Pine, J.2    Potter, S.M.3
  • 28
    • 0037201958 scopus 로고    scopus 로고
    • Real-time multi-channel stimulus artifact suppression by local curve fitting
    • DOI 10.1016/S0165-0270(02)00149-8, PII S0165027002001498
    • D. A. Wagenaar and S. M. Potter, "Real-time multi-channel stimulus artifact suppression by local curve fitting," J. Neurosci. Methods, vol. 120, no. 2, pp. 113-120, 2002. (Pubitemid 35251906)
    • (2002) Journal of Neuroscience Methods , vol.120 , Issue.2 , pp. 113-120
    • Wagenaar, D.A.1    Potter, S.M.2
  • 29
    • 33744497801 scopus 로고    scopus 로고
    • MeaBench: A toolset for multi-electrode data acquisition and on-line analysis
    • DOI 10.1109/CNE.2005.1419673, 1419673, 2nd International IEEE EMBS Conference on Neural Engineering, 2005 - Conference Proceedings
    • D. A. Wagenaar, T. B. DeMarse, and S. M. Potter, "MEABench: A toolset for multi-electrode data acquisition and on-line analysis," in Proc.IEEE 2nd Int. IEEE EMBS Conf. Neural Eng., 2005, pp. 518-521. (Pubitemid 43803374)
    • (2005) 2nd International IEEE EMBS Conference on Neural Engineering , vol.2005 , pp. 518-521
    • Wagenaar, D.1    Demarse, T.B.2    Potter, S.M.3
  • 30
    • 0036459116 scopus 로고    scopus 로고
    • Fitting hidden Markov models to psychological data
    • I. Visser, M. E. J. Raijmakers, and P. C. M. Molenaar, "Fitting hidden Markov models to psychological data," Sci. Program, vol. 10, no. 3, pp. 185-199, 2002. (Pubitemid 35476730)
    • (2002) Scientific Programming , vol.10 , Issue.3 , pp. 185-199
    • Visser, I.1    Raijmakers, M.E.J.2    Molenaar, P.C.M.3
  • 31
    • 77953387342 scopus 로고    scopus 로고
    • Experimental investigation on spontaneously active hippocampal cultures recorded by means of high-density MEAs: Analysis of the spatial resolution effects
    • A. Maccione, M. Gandolfo, M. Tedesco, T. Nieus, K. Imfeld, S. Martinoia, and L. Berdondini, "Experimental investigation on spontaneously active hippocampal cultures recorded by means of high-density MEAs: Analysis of the spatial resolution effects," Front. Neuroeng., vol. 3, no. 4, p. 12, 2010.
    • (2010) Front. Neuroeng. , vol.3 , Issue.4 , pp. 12
    • Maccione, A.1    Gandolfo, M.2    Tedesco, M.3    Nieus, T.4    Imfeld, K.5    Martinoia, S.6    Berdondini, L.7
  • 32
    • 0028671948 scopus 로고
    • Analysis, classification, and coding of multielectrode spike trains with hidden Markov models
    • G. Radons, J. D. Becker, B. Dülfer, and J. Krüger, "Analysis, classification, and coding of multielectrode spike trains with hidden Markov models," Biol. Cybern., vol. 71, no. 4, pp. 359-373, 1994.
    • (1994) Biol. Cybern. , vol.71 , Issue.4 , pp. 359-373
    • Radons, G.1    Becker, J.D.2    Dülfer, B.3    Krüger, J.4
  • 34
    • 0034766266 scopus 로고    scopus 로고
    • Spike-based strategies for rapid processing
    • DOI 10.1016/S0893-6080(01)00083-1, PII S0893608001000831
    • S. Thorpe, A. Delorme, and R. Van Rullen, "Spike-based strategies for rapid processing," Neural Netw., vol. 14, no. 6-7, pp. 715-725, 2001. (Pubitemid 33035869)
    • (2001) Neural Networks , vol.14 , Issue.6-7 , pp. 715-725
    • Thorpe, S.1    Delorme, A.2    Van Rullen, R.3
  • 37
    • 41149142827 scopus 로고    scopus 로고
    • Analysis of cultured neuronal networks using intraburst firing characteristics
    • DOI 10.1109/TBME.2007.913987
    • J. Stegenga, J. L. Feber, E. Marani, and W. L. C. Rutten, "Analysis of cultured neuronal networks using intraburst firing characteristics," IEEE Trans. Biomed. Eng, vol. 55, no. 4, pp. 1382-1390, Apr. 2008. (Pubitemid 351440498)
    • (2008) IEEE Transactions on Biomedical Engineering , vol.55 , Issue.4 , pp. 1382-1390
    • Stegenga, J.1    Le Feber, J.2    Marani, E.3    Rutten, W.L.C.4
  • 38
    • 80051770836 scopus 로고    scopus 로고
    • How should we think about bursts?
    • Baden-Württemberg, Germany
    • S. M. Potter, "How should we think about bursts?," in Proc. MEA Meeting '08 Reutlingen BIOPRO, Baden-Württemberg, Germany, 2008, pp. 22-25.
    • (2008) Proc. MEA Meeting '08 Reutlingen BIOPRO , pp. 22-25
    • Potter, S.M.1
  • 40
    • 0003229133 scopus 로고    scopus 로고
    • The Bayes net toolbox for MATLAB
    • K. P. Murphy, "The Bayes net toolbox for MATLAB," Comput. Sci. Stat., vol. 33, no. 2, pp. 1024-1034, 2001.
    • (2001) Comput. Sci. Stat. , vol.33 , Issue.2 , pp. 1024-1034
    • Murphy, K.P.1
  • 41
    • 31044441059 scopus 로고    scopus 로고
    • A tutorial on Markov Models based on Mendel's classical experiments
    • DOI 10.1142/S021972000500165X, PII S021972000500165X
    • S. Thorvaldsen, "A tutorial on Markov models based on mendel's classical experiments," J. Bioinform. Comput. Biol., vol. 3, no. 6, pp. 1441-1460, 2005. (Pubitemid 43119059)
    • (2005) Journal of Bioinformatics and Computational Biology , vol.3 , Issue.6 , pp. 1441-1460
    • Thorvaldsen, S.1


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